Wall clock time and date at job start Mon Mar 30 2020 01:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47140 * 2 1 4 4 C 1.46497 * 120.00300 * 274.96426 * 3 2 1 5 5 C 1.50704 * 109.47284 * 269.99931 * 4 3 2 6 6 H 1.08000 * 119.99835 * 0.02562 * 5 4 3 7 7 C 1.37870 * 119.99996 * 179.97438 * 5 4 3 8 8 N 1.31520 * 120.00198 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00182 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46794 * 59.99825 * 9 7 5 11 11 H 1.48494 * 109.47302 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46894 * 300.00759 * 9 7 5 13 13 C 1.34780 * 119.99975 * 94.96670 * 3 2 1 14 14 O 1.21589 * 120.00226 * 185.55279 * 13 3 2 15 15 C 1.47506 * 119.99662 * 5.27717 * 13 3 2 16 16 C 1.39343 * 120.21168 * 55.28779 * 15 13 3 17 17 C 1.38322 * 120.50259 * 179.97438 * 16 15 13 18 18 C 1.37909 * 120.58743 * 0.02562 * 17 16 15 19 19 C 1.39543 * 119.99044 * 359.97438 * 18 17 16 20 20 C 1.46576 * 133.95226 * 179.97438 * 19 18 17 21 21 C 1.34207 * 106.88728 * 180.02562 * 20 19 18 22 22 N 1.36906 * 109.88872 * 359.97438 * 21 20 19 23 23 H 0.96994 * 125.01842 * 180.02562 * 22 21 20 24 24 C 1.37118 * 109.96827 * 359.74400 * 22 21 20 25 25 H 1.08999 * 109.47112 * 299.99691 * 1 2 3 26 26 H 1.09003 * 109.46743 * 60.00204 * 1 2 3 27 27 H 1.08998 * 109.47124 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47112 * 240.00309 * 2 1 3 29 29 H 1.08997 * 109.47301 * 120.00224 * 2 1 3 30 30 H 1.08994 * 109.47094 * 29.99841 * 4 3 2 31 31 H 1.08995 * 109.47102 * 150.00209 * 4 3 2 32 32 H 0.96999 * 119.99727 * 180.02562 * 8 7 5 33 33 H 1.08001 * 119.74895 * 0.02562 * 16 15 13 34 34 H 1.07994 * 119.70700 * 180.02562 * 17 16 15 35 35 H 1.07998 * 120.00455 * 179.97438 * 18 17 16 36 36 H 1.07996 * 126.55278 * 0.04182 * 20 19 18 37 37 H 1.08001 * 125.05500 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1590 2.1084 -1.2639 5 6 3.5418 1.8860 -1.8203 6 1 4.2453 1.2647 -1.2860 7 6 3.9084 2.4748 -3.0118 8 7 3.0515 3.2311 -3.6627 9 14 5.6222 2.1986 -3.7019 10 1 5.8323 0.7477 -3.9390 11 1 5.7648 2.9359 -4.9829 12 1 6.6320 2.6928 -2.7317 13 6 2.3382 1.9828 1.1629 14 8 2.6466 3.1589 1.1742 15 6 2.3083 1.2160 2.4226 16 6 3.0465 0.0406 2.5456 17 6 3.0233 -0.6829 3.7243 18 6 2.2694 -0.2537 4.7964 19 6 1.5215 0.9203 4.6978 20 6 0.6363 1.6427 5.6160 21 6 0.1921 2.7250 4.9585 22 7 0.7217 2.7531 3.6963 23 1 0.5465 3.4401 3.0343 24 6 1.5411 1.6700 3.5081 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.4181 1.7456 -1.9762 31 1 2.0045 3.1732 -1.0895 32 1 3.3094 3.6450 -4.5011 33 1 3.6420 -0.3077 1.7147 34 1 3.6006 -1.5919 3.8058 35 1 2.2578 -0.8262 5.7121 36 1 0.3890 1.3584 6.6281 37 1 -0.4820 3.4644 5.3649 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088732934.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:39 Heat of formation + Delta-G solvation = 2.091227 kcal Electronic energy + Delta-G solvation = -20714.227317 eV Core-core repulsion = 17649.041277 eV Total energy + Delta-G solvation = -3065.186040 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.31656 -40.55229 -37.70284 -37.00574 -34.93806 -32.99214 -31.66271 -30.55180 -29.90298 -28.89229 -25.66016 -24.67405 -23.54879 -22.69156 -21.79768 -20.37054 -18.66932 -18.62954 -18.04840 -17.40270 -16.86868 -16.43675 -15.95418 -15.76266 -15.33400 -14.93896 -14.78644 -14.59294 -14.26022 -13.87055 -13.79192 -13.50816 -13.29008 -13.19731 -12.82155 -12.65237 -12.62955 -12.49953 -12.26122 -12.20044 -11.88052 -11.77602 -10.82924 -10.67360 -10.55189 -9.54685 -9.19725 -8.64000 -8.25455 -6.41261 -0.08439 0.66543 1.35002 1.39619 1.46830 1.61006 1.93523 2.24370 2.26699 2.41344 2.91008 3.03887 3.57200 3.86311 4.06937 4.09863 4.14785 4.33525 4.35383 4.50184 4.56061 4.69866 4.82761 4.88490 4.90788 4.97839 5.00995 5.07938 5.15862 5.27338 5.44805 5.52264 5.58130 5.78358 5.80989 5.84401 6.01287 6.19202 6.54826 6.63597 6.69761 7.19928 7.35697 8.81554 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025443 B = 0.005085 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.229759 B = 5505.412692 C = 5664.983923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.092 3.908 3 N -0.591 5.591 4 C 0.261 3.739 5 C -0.547 4.547 6 H 0.055 0.945 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.969 3.031 10 H -0.258 1.258 11 H -0.277 1.277 12 H -0.278 1.278 13 C 0.545 3.455 14 O -0.600 6.600 15 C -0.153 4.153 16 C -0.074 4.074 17 C -0.146 4.146 18 C -0.049 4.049 19 C -0.129 4.129 20 C -0.208 4.208 21 C 0.050 3.950 22 N -0.600 5.600 23 H 0.414 0.586 24 C 0.106 3.894 25 H 0.043 0.957 26 H 0.041 0.959 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.024 0.976 31 H -0.003 1.003 32 H 0.268 0.732 33 H 0.129 0.871 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.180 0.820 37 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.187 -10.259 18.096 21.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.030 4.030 3 N -0.320 5.320 4 C 0.140 3.860 5 C -0.585 4.585 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.182 1.182 11 H -0.202 1.202 12 H -0.204 1.204 13 C 0.334 3.666 14 O -0.483 6.483 15 C -0.159 4.159 16 C -0.094 4.094 17 C -0.165 4.165 18 C -0.067 4.067 19 C -0.134 4.134 20 C -0.232 4.232 21 C -0.075 4.075 22 N -0.202 5.202 23 H 0.250 0.750 24 C -0.004 4.004 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.121 0.879 30 H 0.042 0.958 31 H 0.015 0.985 32 H 0.077 0.923 33 H 0.147 0.853 34 H 0.180 0.820 35 H 0.179 0.821 36 H 0.197 0.803 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -6.137 -9.459 17.832 21.098 hybrid contribution 0.709 1.002 -1.469 1.915 sum -5.428 -8.457 16.363 19.202 Atomic orbital electron populations 1.22061 0.94976 1.03374 1.00867 1.21940 0.95248 0.81637 1.04186 1.48203 1.62226 1.15169 1.06376 1.18758 0.96129 0.91034 0.80045 1.21659 0.99228 1.31060 1.06570 0.92723 1.25874 1.01924 0.94273 0.96916 1.70052 1.37200 1.32671 1.16809 0.85443 0.78689 0.79161 0.77389 1.18202 1.20198 1.20370 1.18912 0.76581 0.86394 0.84671 1.90697 1.51266 1.18570 1.87723 1.18886 1.05735 0.99270 0.91996 1.21124 0.96924 0.91757 0.99596 1.21121 1.01887 1.01654 0.91868 1.21064 0.92919 0.93247 0.99469 1.19658 1.02872 0.97571 0.93294 1.22069 1.03375 0.96770 1.00974 1.22598 1.00528 1.01137 0.83226 1.42058 1.40406 1.22449 1.15245 0.74976 1.18239 0.95976 0.90642 0.95546 0.93779 0.93962 0.88477 0.90459 0.87937 0.95788 0.98480 0.92316 0.85294 0.82011 0.82076 0.80277 0.77562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.61 10.24 71.98 0.74 -3.87 16 2 C 0.09 3.19 5.95 86.38 0.51 3.70 16 3 N -0.59 -27.13 2.46 -829.98 -2.04 -29.17 16 4 C 0.26 14.72 5.23 85.63 0.45 15.17 16 5 C -0.55 -32.35 9.39 25.60 0.24 -32.11 16 6 H 0.05 3.18 7.81 -2.91 -0.02 3.16 16 7 C 0.01 0.54 5.46 84.65 0.46 1.01 16 8 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 9 Si 0.97 45.46 29.54 68.60 2.03 47.48 16 10 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 C 0.55 25.45 7.13 86.69 0.62 26.06 16 14 O -0.60 -33.61 16.63 -4.00 -0.07 -33.68 16 15 C -0.15 -5.60 4.91 -20.03 -0.10 -5.70 16 16 C -0.07 -2.21 7.46 22.56 0.17 -2.04 16 17 C -0.15 -3.17 10.00 22.21 0.22 -2.95 16 18 C -0.05 -1.01 10.09 22.51 0.23 -0.78 16 19 C -0.13 -3.33 6.37 -20.20 -0.13 -3.45 16 20 C -0.21 -4.13 11.09 23.53 0.26 -3.87 16 21 C 0.05 1.01 11.82 82.98 0.98 1.99 16 22 N -0.60 -17.34 6.04 -186.97 -1.13 -18.47 16 23 H 0.41 12.52 8.96 -92.71 -0.83 11.69 16 24 C 0.11 3.45 6.99 39.45 0.28 3.73 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.08 2.71 8.11 -2.39 -0.02 2.69 16 29 H 0.10 3.06 4.42 -2.39 -0.01 3.04 16 30 H 0.02 1.37 8.07 -2.39 -0.02 1.35 16 31 H 0.00 -0.19 7.35 -2.39 -0.02 -0.21 16 32 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 33 H 0.13 3.78 7.57 -2.91 -0.02 3.76 16 34 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.18 2.26 8.06 -2.91 -0.02 2.23 16 37 H 0.21 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -78.79 318.65 4.26 -74.54 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.26 Total: 19.12 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 4.93 Total: -3.11 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -2.88 Total: -104.35 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.07 Total: -33.68 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -78.79 4.26 -74.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088732934.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.627 kcal (2) G-P(sol) polarization free energy of solvation -78.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds