Wall clock time and date at job start Mon Mar 30 2020 01:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47112 * 59.99775 * 9 7 5 11 11 H 1.48497 * 109.47325 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47038 * 300.00131 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21596 * 119.99994 * 359.97438 * 14 13 3 16 16 C 1.47504 * 119.99777 * 179.97438 * 14 13 3 17 17 C 1.39354 * 120.20952 * 359.71643 * 16 14 13 18 18 C 1.38313 * 120.49593 * 179.76460 * 17 16 14 19 19 C 1.37909 * 120.59285 * 0.52183 * 18 17 16 20 20 C 1.39543 * 119.99203 * 359.73817 * 19 18 17 21 21 C 1.46565 * 133.95997 * 180.02562 * 20 19 18 22 22 C 1.34210 * 106.89429 * 180.02562 * 21 20 19 23 23 N 1.36907 * 109.88061 * 359.97438 * 22 21 20 24 24 H 0.97003 * 125.00981 * 179.97438 * 23 22 21 25 25 C 1.37122 * 109.97104 * 359.97438 * 23 22 21 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 31 31 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 32 32 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 33 33 H 1.07999 * 119.74706 * 0.02562 * 17 16 14 34 34 H 1.07998 * 119.70594 * 180.26212 * 18 17 16 35 35 H 1.08000 * 120.00903 * 179.76344 * 19 18 17 36 36 H 1.07998 * 126.55366 * 0.02562 * 21 20 19 37 37 H 1.08001 * 125.05953 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4995 2.2816 1.3821 11 1 6.3978 0.2179 2.6510 12 1 6.5975 0.1473 0.2350 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3416 2.6319 -0.4320 16 6 0.0451 3.3242 -2.6273 17 6 0.9341 3.3691 -3.6996 18 6 0.5727 3.9820 -4.8856 19 6 -0.6681 4.5679 -5.0234 20 6 -1.5739 4.5408 -3.9623 21 6 -2.9353 5.0499 -3.7735 22 6 -3.3052 4.7210 -2.5260 23 7 -2.2917 4.0433 -1.9033 24 1 -2.3251 3.7033 -0.9954 25 6 -1.2225 3.9160 -2.7523 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8293 -0.0610 2.9499 32 1 2.2720 2.1231 -1.9978 33 1 1.9109 2.9182 -3.6050 34 1 1.2701 4.0057 -5.7099 35 1 -0.9390 5.0472 -5.9525 36 1 -3.5276 5.5870 -4.4994 37 1 -4.2602 4.9561 -2.0797 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088733347.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:45 Heat of formation + Delta-G solvation = 12.013523 kcal Electronic energy + Delta-G solvation = -20541.604763 eV Core-core repulsion = 17476.848986 eV Total energy + Delta-G solvation = -3064.755777 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.19652 -38.88687 -36.61990 -35.07590 -32.52677 -31.85384 -30.77953 -29.32945 -28.65300 -26.89760 -23.88625 -22.84853 -21.63494 -21.06522 -20.15909 -19.35529 -17.98904 -17.02874 -16.05508 -15.82535 -15.34856 -14.77920 -14.67490 -14.33388 -14.04833 -13.73772 -13.30962 -13.05188 -12.70021 -12.51678 -12.09888 -11.72133 -11.56629 -11.38778 -11.30828 -11.22054 -11.00660 -10.83240 -10.34225 -10.19834 -9.68268 -9.57787 -9.11079 -9.05628 -8.51330 -8.15806 -7.91899 -7.58925 -6.13681 -4.23223 0.90332 1.74026 2.67038 3.25048 3.30383 3.31544 3.35722 3.50641 4.07076 4.25043 4.37264 4.75780 4.99519 5.09346 5.17735 5.21625 5.36354 5.57195 5.61417 5.90399 5.97959 6.03007 6.37136 6.41792 6.44111 6.59456 6.64112 6.74431 6.81367 7.03127 7.16554 7.22981 7.33845 7.40998 7.60295 7.69294 7.73338 7.88260 8.16114 8.63757 8.75151 9.08455 9.44039 10.91634 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028061 B = 0.004759 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.577015 B = 5882.636223 C = 6490.995616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.699 5.699 14 C 0.547 3.453 15 O -0.562 6.562 16 C -0.137 4.137 17 C -0.066 4.066 18 C -0.157 4.157 19 C -0.054 4.054 20 C -0.124 4.124 21 C -0.211 4.211 22 C 0.048 3.952 23 N -0.577 5.577 24 H 0.428 0.572 25 C 0.148 3.852 26 H 0.022 0.978 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.100 0.900 30 H 0.031 0.969 31 H 0.265 0.735 32 H 0.389 0.611 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.145 0.855 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.874 6.825 -12.216 16.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.346 5.346 14 C 0.334 3.666 15 O -0.443 6.443 16 C -0.143 4.143 17 C -0.086 4.086 18 C -0.177 4.177 19 C -0.073 4.073 20 C -0.129 4.129 21 C -0.236 4.236 22 C -0.079 4.079 23 N -0.180 5.180 24 H 0.268 0.732 25 C 0.037 3.963 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.222 0.778 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.163 0.837 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.408 6.629 -11.168 16.037 hybrid contribution 1.267 -0.191 0.160 1.291 sum -8.141 6.438 -11.008 15.130 Atomic orbital electron populations 1.21836 0.98435 0.98014 1.01125 1.21934 0.92569 0.99761 1.02343 1.18813 0.94267 0.89182 0.80846 0.93243 1.21194 0.90649 1.39172 1.06376 0.92104 1.24879 0.98633 0.94735 0.95340 1.69882 1.35249 1.37512 1.09333 0.86510 0.84807 0.78336 0.77467 1.20170 1.21132 1.20116 1.46433 1.14309 1.55225 1.18588 1.18068 0.82976 0.78989 0.86566 1.90640 1.51818 1.61404 1.40481 1.19332 0.93031 1.05483 0.96445 1.21115 0.98310 0.97233 0.91952 1.20770 0.96980 1.01982 0.97930 1.20604 0.92464 0.97304 0.96961 1.19211 0.95719 1.04027 0.93941 1.21618 0.95163 1.09558 0.97260 1.21910 0.93626 0.98357 0.93999 1.42025 1.11741 1.48447 1.15780 0.73162 1.18000 0.88891 0.99007 0.90451 0.95877 0.94330 0.93214 0.88225 0.94980 0.92501 0.77785 0.85187 0.85614 0.85974 0.83705 0.81360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.79 2.24 -69.08 -0.15 6.64 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -14.07 8.73 -34.44 -0.30 -14.37 16 6 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.57 11.29 55.43 0.63 -23.95 16 9 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.70 -14.70 4.97 -55.98 -0.28 -14.98 16 14 C 0.55 11.23 6.33 -12.48 -0.08 11.15 16 15 O -0.56 -12.75 12.29 5.28 0.06 -12.69 16 16 C -0.14 -2.37 5.88 -104.87 -0.62 -2.99 16 17 C -0.07 -0.95 9.52 -39.14 -0.37 -1.32 16 18 C -0.16 -1.92 10.00 -39.67 -0.40 -2.31 16 19 C -0.05 -0.67 10.09 -39.22 -0.40 -1.06 16 20 C -0.12 -1.77 6.37 -105.15 -0.67 -2.44 16 21 C -0.21 -2.49 11.09 -37.65 -0.42 -2.91 16 22 C 0.05 0.55 11.82 -16.71 -0.20 0.36 16 23 N -0.58 -8.51 5.87 -10.45 -0.06 -8.57 16 24 H 0.43 6.46 7.54 -40.82 -0.31 6.15 16 25 C 0.15 2.43 6.87 -83.76 -0.58 1.85 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 28 H 0.05 1.17 7.84 -51.93 -0.41 0.77 16 29 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.39 7.16 6.56 -40.82 -0.27 6.89 16 33 H 0.13 1.65 6.37 -52.49 -0.33 1.32 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 305.54 15.07 4.60 4.60 Total: -1.00 -30.50 305.54 -8.56 -39.06 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -4.39 Total: 12.74 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -4.10 Total: -11.70 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.29 Total: -47.50 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.06 Total: -12.69 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.50 -8.56 -39.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088733347.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.073 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds