Wall clock time and date at job start Mon Mar 30 2020 01:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47170 * 2 1 4 4 C 1.50703 * 109.47148 * 119.99796 * 2 1 3 5 5 H 1.08002 * 119.99903 * 119.99821 * 4 2 1 6 6 C 1.37876 * 120.00293 * 300.00064 * 4 2 1 7 7 N 1.31516 * 119.99556 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00164 * 179.97438 * 6 4 2 9 9 H 1.48510 * 109.46944 * 89.99890 * 8 6 4 10 10 H 1.48499 * 109.47387 * 209.99809 * 8 6 4 11 11 H 1.48493 * 109.47296 * 330.00247 * 8 6 4 12 12 N 1.46505 * 109.46989 * 239.99849 * 2 1 3 13 13 C 1.46496 * 119.99677 * 300.27417 * 12 2 1 14 14 C 1.34774 * 119.99759 * 120.00512 * 12 2 1 15 15 O 1.21589 * 120.00412 * 355.06836 * 14 12 2 16 16 C 1.47503 * 119.99482 * 175.07683 * 14 12 2 17 17 C 1.39343 * 120.21075 * 316.85972 * 16 14 12 18 18 C 1.38322 * 120.49906 * 179.77299 * 17 16 14 19 19 C 1.37916 * 120.59081 * 0.50653 * 18 17 16 20 20 C 1.39534 * 119.98739 * 359.75041 * 19 18 17 21 21 C 1.46570 * 133.95550 * 180.02562 * 20 19 18 22 22 C 1.34209 * 106.89424 * 179.97438 * 21 20 19 23 23 N 1.36902 * 109.88365 * 359.97438 * 22 21 20 24 24 H 0.96999 * 125.01419 * 179.97438 * 23 22 21 25 25 C 1.37118 * 109.96969 * 359.97438 * 23 22 21 26 26 H 1.08999 * 109.47481 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46823 * 300.00088 * 1 2 3 28 28 H 1.08996 * 109.47041 * 59.99897 * 1 2 3 29 29 H 0.97004 * 119.99718 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47478 * 266.23410 * 13 12 2 31 31 H 1.08996 * 109.47740 * 26.23707 * 13 12 2 32 32 H 1.09002 * 109.46952 * 146.23829 * 13 12 2 33 33 H 1.07998 * 119.74705 * 359.97438 * 17 16 14 34 34 H 1.08004 * 119.70379 * 180.25849 * 18 17 16 35 35 H 1.07998 * 120.00265 * 179.76889 * 19 18 17 36 36 H 1.08000 * 126.55576 * 359.97438 * 21 20 19 37 37 H 1.08004 * 125.06224 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.6298 -0.5458 4.4123 10 1 1.3432 -0.9492 5.1121 11 1 2.4859 -2.5661 3.7120 12 7 2.0183 -0.6907 -1.1962 13 6 1.6593 -2.0914 -1.4310 14 6 2.7932 -0.0357 -2.0833 15 8 3.0133 1.1513 -1.9384 16 6 3.3740 -0.7589 -3.2302 17 6 3.9326 -2.0230 -3.0519 18 6 4.4748 -2.7085 -4.1241 19 6 4.4810 -2.1485 -5.3844 20 6 3.9323 -0.8817 -5.5875 21 6 3.7768 -0.0165 -6.7602 22 6 3.1649 1.1021 -6.3413 23 7 2.9166 1.0216 -4.9974 24 1 2.4830 1.7100 -4.4692 25 6 3.3715 -0.1758 -4.5080 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.7095 1.1619 3.4844 30 1 2.4408 -2.7385 -1.0325 31 1 0.7153 -2.3131 -0.9332 32 1 1.5550 -2.2652 -2.5020 33 1 3.9394 -2.4722 -2.0698 34 1 4.9006 -3.6893 -3.9721 35 1 4.9101 -2.6906 -6.2141 36 1 4.0939 -0.2369 -7.7688 37 1 2.9067 1.9410 -6.9706 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088733403.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:54 Heat of formation + Delta-G solvation = 27.538864 kcal Electronic energy + Delta-G solvation = -20695.717339 eV Core-core repulsion = 17631.634791 eV Total energy + Delta-G solvation = -3064.082548 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.21764 -38.96712 -36.57769 -35.34748 -32.95768 -31.78734 -29.72017 -29.21233 -28.34063 -26.21704 -25.23893 -23.71867 -21.63052 -21.43963 -20.46551 -18.82903 -17.46407 -16.76249 -16.24091 -15.86827 -15.43606 -14.78486 -14.66987 -14.30997 -14.10445 -13.69351 -13.10371 -13.01187 -12.84131 -12.53730 -12.20860 -11.74464 -11.63744 -11.56357 -11.30797 -11.12599 -11.04183 -10.81902 -10.72750 -10.25947 -10.18305 -9.61847 -9.20836 -9.02473 -8.44582 -8.14293 -7.69864 -7.55028 -6.09034 -4.17195 0.99428 1.75010 2.68239 3.26482 3.27911 3.32953 3.34559 3.43873 3.91234 4.10225 4.39156 4.75462 4.92361 5.14153 5.17439 5.22510 5.34366 5.47652 5.61882 5.79745 5.87024 5.98006 6.02729 6.11734 6.32768 6.48923 6.61454 6.73239 6.75717 6.80051 6.82024 7.03028 7.21689 7.41084 7.48630 7.62092 7.69594 7.99026 8.16524 8.48945 8.79642 8.99377 9.49448 10.96294 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029934 B = 0.004941 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.175772 B = 5664.982290 C = 6176.264832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.583 5.583 13 C 0.085 3.915 14 C 0.546 3.454 15 O -0.558 6.558 16 C -0.128 4.128 17 C -0.067 4.067 18 C -0.155 4.155 19 C -0.059 4.059 20 C -0.120 4.120 21 C -0.209 4.209 22 C 0.049 3.951 23 N -0.584 5.584 24 H 0.423 0.577 25 C 0.140 3.860 26 H 0.031 0.969 27 H 0.094 0.906 28 H 0.010 0.990 29 H 0.263 0.737 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.135 0.865 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.146 0.854 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.994 -5.477 -16.086 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.313 5.313 13 C -0.058 4.058 14 C 0.334 3.666 15 O -0.438 6.438 16 C -0.134 4.134 17 C -0.087 4.087 18 C -0.174 4.174 19 C -0.078 4.078 20 C -0.125 4.125 21 C -0.234 4.234 22 C -0.077 4.077 23 N -0.186 5.186 24 H 0.261 0.739 25 C 0.030 3.970 26 H 0.050 0.950 27 H 0.113 0.887 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.153 0.847 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.163 0.837 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.914 -4.620 -15.773 16.692 hybrid contribution 0.115 -0.198 1.156 1.179 sum 3.030 -4.818 -14.617 15.686 Atomic orbital electron populations 1.22093 0.98163 0.99441 1.00819 1.18985 0.90976 0.94516 0.79819 0.91911 1.21310 1.31864 1.13034 0.90191 0.92205 1.24896 0.94905 0.94992 0.98987 1.69882 1.36343 1.22633 1.23779 0.86476 0.78641 0.79890 0.82276 1.20600 1.21119 1.19859 1.48180 1.48032 1.11944 1.23112 1.21716 1.01287 0.83009 0.99827 1.18223 0.79387 0.86718 0.82307 1.90715 1.61699 1.15278 1.76148 1.19160 1.06691 0.96282 0.91284 1.21232 0.95730 0.92027 0.99663 1.20788 1.03575 1.00643 0.92369 1.20578 0.97260 0.92988 0.96985 1.19169 1.04519 0.95835 0.92971 1.21626 1.09226 0.94743 0.97825 1.21867 1.01858 1.00240 0.83753 1.41851 1.52064 1.16361 1.08306 0.73949 1.17989 0.98748 0.86987 0.93318 0.95005 0.88738 0.97061 0.92677 0.93149 0.90738 0.92644 0.84705 0.85633 0.86010 0.83661 0.81335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.95 37.16 0.33 -3.20 16 2 C 0.26 6.62 2.63 -69.08 -0.18 6.44 16 3 H 0.06 1.87 6.91 -51.93 -0.36 1.51 16 4 C -0.53 -14.21 8.37 -34.44 -0.29 -14.50 16 5 H 0.06 1.59 7.66 -52.49 -0.40 1.19 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.58 -12.77 2.75 -176.51 -0.49 -13.26 16 13 C 0.09 1.50 8.21 59.84 0.49 1.99 16 14 C 0.55 11.94 7.26 -12.49 -0.09 11.85 16 15 O -0.56 -14.01 15.98 5.29 0.08 -13.92 16 16 C -0.13 -2.31 4.92 -104.87 -0.52 -2.82 16 17 C -0.07 -1.02 7.90 -39.14 -0.31 -1.33 16 18 C -0.15 -1.94 10.00 -39.67 -0.40 -2.34 16 19 C -0.06 -0.74 10.09 -39.22 -0.40 -1.13 16 20 C -0.12 -1.72 6.37 -105.15 -0.67 -2.39 16 21 C -0.21 -2.47 11.09 -37.64 -0.42 -2.89 16 22 C 0.05 0.56 11.82 -16.71 -0.20 0.37 16 23 N -0.58 -8.55 6.03 -10.45 -0.06 -8.61 16 24 H 0.42 6.17 8.65 -40.82 -0.35 5.82 16 25 C 0.14 2.32 6.89 -83.76 -0.58 1.74 16 26 H 0.03 0.70 6.65 -51.93 -0.35 0.36 16 27 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.05 0.82 6.75 -51.93 -0.35 0.47 16 31 H 0.07 1.31 6.42 -51.93 -0.33 0.98 16 32 H 0.05 0.85 6.63 -51.93 -0.34 0.50 16 33 H 0.14 1.98 6.07 -52.49 -0.32 1.66 16 34 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.17 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 307.23 15.07 4.63 4.63 Total: -1.00 -32.11 307.23 -7.91 -40.02 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -4.37 Total: 6.18 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -3.31 Total: -6.55 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.08 Total: -46.35 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.08 Total: -13.92 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.11 -7.91 -40.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088733403.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.554 kcal (2) G-P(sol) polarization free energy of solvation -32.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds