Wall clock time and date at job start Mon Mar 30 2020 01:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47170 * 2 1 4 4 C 1.50703 * 109.47148 * 119.99796 * 2 1 3 5 5 H 1.08002 * 119.99903 * 119.99821 * 4 2 1 6 6 C 1.37876 * 120.00293 * 300.00064 * 4 2 1 7 7 N 1.31516 * 119.99556 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00164 * 179.97438 * 6 4 2 9 9 H 1.48510 * 109.46944 * 89.99890 * 8 6 4 10 10 H 1.48499 * 109.47387 * 209.99809 * 8 6 4 11 11 H 1.48493 * 109.47296 * 330.00247 * 8 6 4 12 12 N 1.46505 * 109.46989 * 239.99849 * 2 1 3 13 13 C 1.46496 * 119.99677 * 300.27417 * 12 2 1 14 14 C 1.34774 * 119.99759 * 120.00512 * 12 2 1 15 15 O 1.21589 * 120.00412 * 355.06836 * 14 12 2 16 16 C 1.47503 * 119.99482 * 175.07683 * 14 12 2 17 17 C 1.39343 * 120.21075 * 316.85972 * 16 14 12 18 18 C 1.38322 * 120.49906 * 179.77299 * 17 16 14 19 19 C 1.37916 * 120.59081 * 0.50653 * 18 17 16 20 20 C 1.39534 * 119.98739 * 359.75041 * 19 18 17 21 21 C 1.46570 * 133.95550 * 180.02562 * 20 19 18 22 22 C 1.34209 * 106.89424 * 179.97438 * 21 20 19 23 23 N 1.36902 * 109.88365 * 359.97438 * 22 21 20 24 24 H 0.96999 * 125.01419 * 179.97438 * 23 22 21 25 25 C 1.37118 * 109.96969 * 359.97438 * 23 22 21 26 26 H 1.08999 * 109.47481 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46823 * 300.00088 * 1 2 3 28 28 H 1.08996 * 109.47041 * 59.99897 * 1 2 3 29 29 H 0.97004 * 119.99718 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47478 * 266.23410 * 13 12 2 31 31 H 1.08996 * 109.47740 * 26.23707 * 13 12 2 32 32 H 1.09002 * 109.46952 * 146.23829 * 13 12 2 33 33 H 1.07998 * 119.74705 * 359.97438 * 17 16 14 34 34 H 1.08004 * 119.70379 * 180.25849 * 18 17 16 35 35 H 1.07998 * 120.00265 * 179.76889 * 19 18 17 36 36 H 1.08000 * 126.55576 * 359.97438 * 21 20 19 37 37 H 1.08004 * 125.06224 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.6298 -0.5458 4.4123 10 1 1.3432 -0.9492 5.1121 11 1 2.4859 -2.5661 3.7120 12 7 2.0183 -0.6907 -1.1962 13 6 1.6593 -2.0914 -1.4310 14 6 2.7932 -0.0357 -2.0833 15 8 3.0133 1.1513 -1.9384 16 6 3.3740 -0.7589 -3.2302 17 6 3.9326 -2.0230 -3.0519 18 6 4.4748 -2.7085 -4.1241 19 6 4.4810 -2.1485 -5.3844 20 6 3.9323 -0.8817 -5.5875 21 6 3.7768 -0.0165 -6.7602 22 6 3.1649 1.1021 -6.3413 23 7 2.9166 1.0216 -4.9974 24 1 2.4830 1.7100 -4.4692 25 6 3.3715 -0.1758 -4.5080 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.7095 1.1619 3.4844 30 1 2.4408 -2.7385 -1.0325 31 1 0.7153 -2.3131 -0.9332 32 1 1.5550 -2.2652 -2.5020 33 1 3.9394 -2.4722 -2.0698 34 1 4.9006 -3.6893 -3.9721 35 1 4.9101 -2.6906 -6.2141 36 1 4.0939 -0.2369 -7.7688 37 1 2.9067 1.9410 -6.9706 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088733403.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:54 Heat of formation + Delta-G solvation = 7.508590 kcal Electronic energy + Delta-G solvation = -20696.585917 eV Core-core repulsion = 17631.634791 eV Total energy + Delta-G solvation = -3064.951126 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.30026 -40.56432 -37.69658 -37.18853 -34.84980 -33.05400 -31.34163 -30.35613 -29.51208 -27.76210 -27.32527 -25.07916 -22.91648 -22.68145 -21.66803 -20.33713 -18.78035 -18.39473 -17.93592 -17.36894 -16.82492 -16.36805 -16.12146 -15.66572 -15.29668 -14.93724 -14.70470 -14.48647 -14.13135 -13.91450 -13.58322 -13.36380 -13.16371 -12.96878 -12.73043 -12.71981 -12.67808 -12.42143 -12.26761 -12.14509 -12.11549 -11.22977 -10.82076 -10.62770 -10.50850 -9.42228 -9.18925 -8.65300 -8.16857 -6.34062 -0.11990 0.68174 1.40996 1.42241 1.52399 1.61067 2.00986 2.27176 2.29167 2.46982 2.94543 3.11074 3.61297 3.88076 4.07877 4.13557 4.34215 4.41006 4.49926 4.63843 4.69728 4.70944 4.82063 4.88824 4.96631 5.00406 5.04801 5.08249 5.40374 5.44364 5.55930 5.59828 5.63309 5.80973 5.85079 5.98763 6.11403 6.20238 6.56968 6.72491 6.74219 7.22960 7.40916 8.87663 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029934 B = 0.004941 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.175772 B = 5664.982290 C = 6176.264832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.008 0.992 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.967 3.033 9 H -0.282 1.282 10 H -0.280 1.280 11 H -0.259 1.259 12 N -0.590 5.590 13 C 0.086 3.914 14 C 0.540 3.460 15 O -0.607 6.607 16 C -0.162 4.162 17 C -0.067 4.067 18 C -0.151 4.151 19 C -0.045 4.045 20 C -0.135 4.135 21 C -0.208 4.208 22 C 0.047 3.953 23 N -0.598 5.598 24 H 0.416 0.584 25 C 0.108 3.892 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.016 0.984 29 H 0.265 0.735 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.135 0.865 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.180 0.820 37 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.041 -8.118 -18.104 20.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.159 3.841 3 H 0.026 0.974 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.792 3.208 9 H -0.209 1.209 10 H -0.205 1.205 11 H -0.183 1.183 12 N -0.319 5.319 13 C -0.056 4.056 14 C 0.330 3.670 15 O -0.491 6.491 16 C -0.168 4.168 17 C -0.086 4.086 18 C -0.170 4.170 19 C -0.063 4.063 20 C -0.139 4.139 21 C -0.232 4.232 22 C -0.078 4.078 23 N -0.200 5.200 24 H 0.252 0.748 25 C -0.002 4.002 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.152 0.848 34 H 0.180 0.820 35 H 0.179 0.821 36 H 0.197 0.803 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 3.960 -7.307 -17.830 19.672 hybrid contribution -0.175 0.650 1.666 1.797 sum 3.785 -6.657 -16.164 17.886 Atomic orbital electron populations 1.21881 0.97083 1.00199 0.99888 1.18597 0.91746 0.92188 0.81521 0.97386 1.21557 1.32060 1.13167 0.90940 0.91932 1.25761 0.94974 0.95644 1.02080 1.70027 1.37258 1.23921 1.24498 0.85415 0.77739 0.79294 0.78342 1.20851 1.20496 1.18340 1.48155 1.48102 1.13535 1.22070 1.21897 1.01573 0.80599 1.01515 1.18951 0.78656 0.86378 0.83036 1.90661 1.63408 1.17633 1.77429 1.18936 1.09742 0.97778 0.90314 1.21359 0.95432 0.91088 1.00731 1.21152 1.02659 1.01729 0.91497 1.21088 0.95107 0.92093 0.98055 1.19664 1.04428 0.96756 0.93100 1.22070 1.08648 0.93966 0.98532 1.22607 1.00984 1.01571 0.82600 1.42091 1.52347 1.15923 1.09591 0.74792 1.18307 1.00062 0.88200 0.93631 0.93226 0.91115 0.96454 0.92592 0.91658 0.90871 0.90274 0.84757 0.82024 0.82134 0.80298 0.77580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.58 8.95 71.98 0.64 -5.93 16 2 C 0.26 14.10 2.63 44.24 0.12 14.21 16 3 H 0.01 0.52 6.91 -2.39 -0.02 0.51 16 4 C -0.54 -29.81 8.37 25.60 0.21 -29.59 16 5 H 0.06 3.34 7.66 -2.91 -0.02 3.32 16 6 C 0.01 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -53.54 11.32 21.45 0.24 -53.29 16 8 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 9 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 12 N -0.59 -26.73 2.75 -830.61 -2.29 -29.01 16 13 C 0.09 2.98 8.21 127.77 1.05 4.03 16 14 C 0.54 24.79 7.26 86.69 0.63 25.42 16 15 O -0.61 -32.83 15.98 -4.00 -0.06 -32.90 16 16 C -0.16 -5.89 4.92 -20.03 -0.10 -5.99 16 17 C -0.07 -1.94 7.90 22.56 0.18 -1.76 16 18 C -0.15 -3.27 10.00 22.21 0.22 -3.05 16 19 C -0.05 -0.94 10.09 22.51 0.23 -0.72 16 20 C -0.13 -3.52 6.37 -20.21 -0.13 -3.65 16 21 C -0.21 -4.24 11.09 23.52 0.26 -3.98 16 22 C 0.05 0.99 11.82 82.98 0.98 1.97 16 23 N -0.60 -17.66 6.03 -186.97 -1.13 -18.79 16 24 H 0.42 12.91 8.65 -92.71 -0.80 12.11 16 25 C 0.11 3.58 6.89 39.45 0.27 3.85 16 26 H 0.05 2.23 6.65 -2.39 -0.02 2.22 16 27 H 0.07 3.87 6.07 -2.38 -0.01 3.86 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 30 H 0.06 2.05 6.75 -2.39 -0.02 2.03 16 31 H 0.07 2.52 6.42 -2.39 -0.02 2.50 16 32 H 0.08 2.35 6.63 -2.39 -0.02 2.33 16 33 H 0.13 3.79 6.07 -2.91 -0.02 3.78 16 34 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 35 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.21 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -74.05 307.23 4.11 -69.94 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.30 Total: 22.62 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 5.02 Total: -3.91 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -3.17 Total: -101.09 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.06 Total: -32.90 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -74.05 4.11 -69.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088733403.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.446 kcal (2) G-P(sol) polarization free energy of solvation -74.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds