Wall clock time and date at job start Mon Mar 30 2020 01:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47280 * 2 1 4 4 C 1.50707 * 109.47068 * 239.99981 * 2 1 3 5 5 H 1.07999 * 120.00405 * 268.08664 * 4 2 1 6 6 C 1.37885 * 119.99334 * 88.08720 * 4 2 1 7 7 N 1.31515 * 119.99481 * 169.17301 * 6 4 2 8 8 Si 1.86790 * 120.00263 * 349.16873 * 6 4 2 9 9 H 1.48496 * 109.47296 * 89.95371 * 8 6 4 10 10 H 1.48504 * 109.47228 * 209.95479 * 8 6 4 11 11 H 1.48505 * 109.47284 * 329.95583 * 8 6 4 12 12 N 1.46502 * 109.47149 * 120.00356 * 2 1 3 13 13 C 1.46503 * 119.99720 * 60.00066 * 12 2 1 14 14 C 1.34767 * 120.00075 * 239.99797 * 12 2 1 15 15 O 1.21600 * 120.00233 * 7.30812 * 14 12 2 16 16 C 1.47508 * 120.00234 * 187.30304 * 14 12 2 17 17 C 1.39347 * 120.20461 * 323.39331 * 16 14 12 18 18 C 1.38323 * 120.49570 * 179.83788 * 17 16 14 19 19 C 1.37917 * 120.58851 * 0.40233 * 18 17 16 20 20 C 1.39536 * 119.99026 * 359.81165 * 19 18 17 21 21 C 1.46574 * 133.95555 * 179.97438 * 20 19 18 22 22 C 1.34205 * 106.89373 * 180.02562 * 21 20 19 23 23 N 1.36901 * 109.88292 * 0.02562 * 22 21 20 24 24 H 0.97000 * 125.01901 * 180.02562 * 23 22 21 25 25 C 1.37124 * 109.97038 * 359.97438 * 23 22 21 26 26 H 1.08996 * 109.47313 * 174.46688 * 1 2 3 27 27 H 1.08996 * 109.47153 * 294.47213 * 1 2 3 28 28 H 1.09006 * 109.47311 * 54.46636 * 1 2 3 29 29 H 0.96996 * 119.99718 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.46993 * 265.55602 * 13 12 2 31 31 H 1.08999 * 109.47200 * 145.56252 * 13 12 2 32 32 H 1.08995 * 109.47700 * 25.55421 * 13 12 2 33 33 H 1.07993 * 119.75583 * 0.02562 * 17 16 14 34 34 H 1.08001 * 119.70935 * 180.21930 * 18 17 16 35 35 H 1.08000 * 120.00301 * 179.84784 * 19 18 17 36 36 H 1.07997 * 126.54951 * 0.04964 * 21 20 19 37 37 H 1.07994 * 125.06216 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.2418 -1.7693 -1.1951 6 6 2.2245 -0.0084 -2.4016 7 7 2.8583 -0.5695 -3.4081 8 14 1.5846 1.7394 -2.5585 9 1 2.6302 2.6919 -2.1063 10 1 1.2431 2.0161 -3.9771 11 1 0.3715 1.8999 -1.7170 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4278 14 6 2.7931 -0.0358 2.0833 15 8 2.9780 1.1600 1.9627 16 6 3.4169 -0.7695 3.2006 17 6 2.7308 -1.8080 3.8272 18 6 3.3113 -2.5023 4.8733 19 6 4.5744 -2.1732 5.3188 20 6 5.2798 -1.1343 4.7105 21 6 6.6018 -0.5392 4.9262 22 6 6.7384 0.4450 4.0241 23 7 5.6119 0.5273 3.2506 24 1 5.4764 1.1627 2.5304 25 6 4.7037 -0.4220 3.6436 26 1 -0.3634 -1.0228 -0.0991 27 1 -0.3633 0.4257 0.9353 28 1 -0.3634 0.5973 -0.8363 29 1 2.9932 -0.0758 -4.2321 30 1 0.7818 -2.1448 2.0654 31 1 2.4955 -2.6019 1.9163 32 1 1.4524 -2.5769 0.4743 33 1 1.7396 -2.0749 3.4916 34 1 2.7695 -3.3073 5.3474 35 1 5.0176 -2.7200 6.1379 36 1 7.3274 -0.8363 5.6689 37 1 7.6074 1.0784 3.9238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088733404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:57 Heat of formation + Delta-G solvation = 38.237937 kcal Electronic energy + Delta-G solvation = -20817.025909 eV Core-core repulsion = 17753.407308 eV Total energy + Delta-G solvation = -3063.618601 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.22378 -39.12011 -36.63231 -35.48431 -32.90355 -31.86559 -30.34386 -29.33404 -28.47237 -26.41190 -25.24245 -23.72261 -21.67500 -21.42449 -20.43484 -18.79681 -17.44830 -17.27606 -16.38138 -15.88785 -15.54679 -14.84891 -14.77311 -14.27785 -13.97804 -13.77151 -13.14391 -13.01100 -12.88902 -12.63901 -12.30050 -12.21813 -11.96192 -11.65172 -11.62239 -11.38014 -11.24994 -10.82494 -10.66878 -10.27494 -9.76657 -9.59464 -9.34113 -9.09456 -8.64843 -8.13277 -7.75934 -7.57624 -6.21525 -4.21189 0.96949 1.75031 2.69768 3.24236 3.31046 3.33123 3.36420 3.39930 3.78151 4.12351 4.33846 4.75408 4.89847 5.07532 5.13340 5.19858 5.33958 5.46686 5.62693 5.74414 5.83749 5.90386 5.98899 6.05921 6.26183 6.34771 6.38827 6.44714 6.55795 6.60198 6.76316 6.82478 6.90803 7.05890 7.23713 7.44492 7.58733 7.66429 8.08916 8.44320 8.79357 8.85814 9.41649 10.90495 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023679 B = 0.005733 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.179495 B = 4883.145403 C = 5441.567788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.229 3.771 3 H 0.060 0.940 4 C -0.531 4.531 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.888 5.888 8 Si 0.864 3.136 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.252 1.252 12 N -0.576 5.576 13 C 0.073 3.927 14 C 0.550 3.450 15 O -0.564 6.564 16 C -0.131 4.131 17 C -0.077 4.077 18 C -0.158 4.158 19 C -0.056 4.056 20 C -0.121 4.121 21 C -0.210 4.210 22 C 0.051 3.949 23 N -0.582 5.582 24 H 0.425 0.575 25 C 0.145 3.855 26 H 0.050 0.950 27 H 0.026 0.974 28 H 0.062 0.938 29 H 0.266 0.734 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.141 0.859 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.146 0.854 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.997 -2.857 15.963 16.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.128 3.872 3 H 0.078 0.922 4 C -0.569 4.569 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.691 3.309 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.176 1.176 12 N -0.305 5.305 13 C -0.071 4.071 14 C 0.338 3.662 15 O -0.445 6.445 16 C -0.137 4.137 17 C -0.097 4.097 18 C -0.177 4.177 19 C -0.075 4.075 20 C -0.126 4.126 21 C -0.235 4.235 22 C -0.076 4.076 23 N -0.183 5.183 24 H 0.263 0.737 25 C 0.034 3.966 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.159 0.841 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.164 0.836 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.146 -2.107 15.545 16.000 hybrid contribution -0.276 1.076 -0.665 1.295 sum 2.870 -1.031 14.881 15.190 Atomic orbital electron populations 1.22450 0.98468 1.01160 0.99602 1.19188 0.90689 0.94696 0.82670 0.92166 1.21109 1.45302 0.97444 0.93012 0.90348 1.24888 0.93648 0.97957 0.95856 1.69932 1.39040 1.38395 1.05097 0.87125 0.80867 0.85349 0.77521 1.20055 1.21187 1.17641 1.48025 1.48312 1.11753 1.22425 1.22092 0.99104 0.83176 1.02696 1.18232 0.79224 0.86779 0.81949 1.90689 1.63402 1.14635 1.75772 1.19083 0.93481 1.00668 1.00483 1.21537 1.00190 0.93036 0.94903 1.20781 0.96011 1.01997 0.98960 1.20596 0.93837 0.94832 0.98217 1.19174 0.95726 0.99276 0.98414 1.21620 0.96905 1.00771 1.04185 1.21886 0.90965 1.00746 0.94000 1.41906 1.13520 1.30867 1.32034 0.73697 1.17960 0.90865 0.91748 0.96012 0.93059 0.95442 0.91916 0.92410 0.93401 0.91228 0.89894 0.84104 0.85622 0.85982 0.83625 0.81302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 8.85 37.16 0.33 -3.02 16 2 C 0.23 5.52 2.20 -69.08 -0.15 5.37 16 3 H 0.06 1.60 5.13 -51.93 -0.27 1.33 16 4 C -0.53 -14.52 8.67 -34.43 -0.30 -14.81 16 5 H 0.08 2.28 6.93 -52.49 -0.36 1.91 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 7 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 8 Si 0.86 21.32 26.42 -169.99 -4.49 16.83 16 9 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.25 -5.83 5.13 56.52 0.29 -5.54 16 12 N -0.58 -12.26 2.75 -176.50 -0.49 -12.75 16 13 C 0.07 1.22 7.92 59.85 0.47 1.70 16 14 C 0.55 11.79 7.37 -12.49 -0.09 11.70 16 15 O -0.56 -13.66 15.55 5.28 0.08 -13.58 16 16 C -0.13 -2.35 5.38 -104.87 -0.56 -2.92 16 17 C -0.08 -1.11 7.49 -39.14 -0.29 -1.40 16 18 C -0.16 -1.92 10.00 -39.67 -0.40 -2.32 16 19 C -0.06 -0.70 10.09 -39.22 -0.40 -1.10 16 20 C -0.12 -1.78 6.37 -105.15 -0.67 -2.45 16 21 C -0.21 -2.59 11.09 -37.64 -0.42 -3.01 16 22 C 0.05 0.62 11.82 -16.71 -0.20 0.42 16 23 N -0.58 -9.10 5.95 -10.46 -0.06 -9.16 16 24 H 0.42 6.79 8.34 -40.82 -0.34 6.45 16 25 C 0.14 2.49 6.87 -83.76 -0.58 1.91 16 26 H 0.05 1.00 7.85 -51.93 -0.41 0.60 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 1.35 5.38 -51.93 -0.28 1.07 16 29 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.05 0.66 7.02 -51.93 -0.36 0.30 16 31 H 0.07 1.07 5.50 -51.93 -0.29 0.78 16 32 H 0.08 1.49 6.66 -51.93 -0.35 1.14 16 33 H 0.14 1.79 4.94 -52.49 -0.26 1.53 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 299.99 15.07 4.52 4.52 Total: -1.00 -33.31 299.99 -7.28 -40.59 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.27 Total: 7.11 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -3.35 Total: -7.76 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.23 Total: -47.71 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.08 Total: -13.58 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.49 Total: 16.83 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.31 -7.28 -40.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088733404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.829 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds