Wall clock time and date at job start Mon Mar 30 2020 01:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47280 * 2 1 4 4 C 1.50707 * 109.47068 * 239.99981 * 2 1 3 5 5 H 1.07999 * 120.00405 * 268.08664 * 4 2 1 6 6 C 1.37885 * 119.99334 * 88.08720 * 4 2 1 7 7 N 1.31515 * 119.99481 * 169.17301 * 6 4 2 8 8 Si 1.86790 * 120.00263 * 349.16873 * 6 4 2 9 9 H 1.48496 * 109.47296 * 89.95371 * 8 6 4 10 10 H 1.48504 * 109.47228 * 209.95479 * 8 6 4 11 11 H 1.48505 * 109.47284 * 329.95583 * 8 6 4 12 12 N 1.46502 * 109.47149 * 120.00356 * 2 1 3 13 13 C 1.46503 * 119.99720 * 60.00066 * 12 2 1 14 14 C 1.34767 * 120.00075 * 239.99797 * 12 2 1 15 15 O 1.21600 * 120.00233 * 7.30812 * 14 12 2 16 16 C 1.47508 * 120.00234 * 187.30304 * 14 12 2 17 17 C 1.39347 * 120.20461 * 323.39331 * 16 14 12 18 18 C 1.38323 * 120.49570 * 179.83788 * 17 16 14 19 19 C 1.37917 * 120.58851 * 0.40233 * 18 17 16 20 20 C 1.39536 * 119.99026 * 359.81165 * 19 18 17 21 21 C 1.46574 * 133.95555 * 179.97438 * 20 19 18 22 22 C 1.34205 * 106.89373 * 180.02562 * 21 20 19 23 23 N 1.36901 * 109.88292 * 0.02562 * 22 21 20 24 24 H 0.97000 * 125.01901 * 180.02562 * 23 22 21 25 25 C 1.37124 * 109.97038 * 359.97438 * 23 22 21 26 26 H 1.08996 * 109.47313 * 174.46688 * 1 2 3 27 27 H 1.08996 * 109.47153 * 294.47213 * 1 2 3 28 28 H 1.09006 * 109.47311 * 54.46636 * 1 2 3 29 29 H 0.96996 * 119.99718 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.46993 * 265.55602 * 13 12 2 31 31 H 1.08999 * 109.47200 * 145.56252 * 13 12 2 32 32 H 1.08995 * 109.47700 * 25.55421 * 13 12 2 33 33 H 1.07993 * 119.75583 * 0.02562 * 17 16 14 34 34 H 1.08001 * 119.70935 * 180.21930 * 18 17 16 35 35 H 1.08000 * 120.00301 * 179.84784 * 19 18 17 36 36 H 1.07997 * 126.54951 * 0.04964 * 21 20 19 37 37 H 1.07994 * 125.06216 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.2418 -1.7693 -1.1951 6 6 2.2245 -0.0084 -2.4016 7 7 2.8583 -0.5695 -3.4081 8 14 1.5846 1.7394 -2.5585 9 1 2.6302 2.6919 -2.1063 10 1 1.2431 2.0161 -3.9771 11 1 0.3715 1.8999 -1.7170 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4278 14 6 2.7931 -0.0358 2.0833 15 8 2.9780 1.1600 1.9627 16 6 3.4169 -0.7695 3.2006 17 6 2.7308 -1.8080 3.8272 18 6 3.3113 -2.5023 4.8733 19 6 4.5744 -2.1732 5.3188 20 6 5.2798 -1.1343 4.7105 21 6 6.6018 -0.5392 4.9262 22 6 6.7384 0.4450 4.0241 23 7 5.6119 0.5273 3.2506 24 1 5.4764 1.1627 2.5304 25 6 4.7037 -0.4220 3.6436 26 1 -0.3634 -1.0228 -0.0991 27 1 -0.3633 0.4257 0.9353 28 1 -0.3634 0.5973 -0.8363 29 1 2.9932 -0.0758 -4.2321 30 1 0.7818 -2.1448 2.0654 31 1 2.4955 -2.6019 1.9163 32 1 1.4524 -2.5769 0.4743 33 1 1.7396 -2.0749 3.4916 34 1 2.7695 -3.3073 5.3474 35 1 5.0176 -2.7200 6.1379 36 1 7.3274 -0.8363 5.6689 37 1 7.6074 1.0784 3.9238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088733404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:57 Heat of formation + Delta-G solvation = 16.027821 kcal Electronic energy + Delta-G solvation = -20817.989012 eV Core-core repulsion = 17753.407308 eV Total energy + Delta-G solvation = -3064.581704 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.32554 -40.64868 -37.75444 -37.22290 -34.80646 -33.29153 -31.89802 -30.41767 -29.58629 -27.85891 -27.26344 -25.04873 -22.94632 -22.62520 -21.65333 -20.31801 -19.18173 -18.61274 -17.93669 -17.47794 -16.78648 -16.33086 -16.25206 -15.61041 -15.28147 -15.02349 -14.75159 -14.52898 -14.18345 -14.09395 -13.93864 -13.58810 -13.51135 -13.25676 -12.92006 -12.69999 -12.62319 -12.39615 -12.21497 -12.01382 -11.62075 -11.35028 -10.86219 -10.76940 -10.58051 -9.46872 -9.15614 -8.65972 -8.40846 -6.43420 -0.13696 0.69033 1.26220 1.31070 1.39037 1.58677 1.96298 2.24494 2.29118 2.31055 2.96506 2.99390 3.58647 3.87427 4.05856 4.12041 4.32524 4.38590 4.45378 4.51481 4.58694 4.69408 4.70535 4.76067 4.89944 4.94673 5.02090 5.07257 5.10389 5.31744 5.43261 5.52340 5.58395 5.73539 5.80921 5.84862 6.11991 6.20839 6.54537 6.60144 6.67504 7.15727 7.28121 8.74434 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023679 B = 0.005733 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.179495 B = 4883.145403 C = 5441.567788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.229 3.771 3 H 0.033 0.967 4 C -0.527 4.527 5 H 0.051 0.949 6 C 0.027 3.973 7 N -0.933 5.933 8 Si 0.918 3.082 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.227 1.227 12 N -0.586 5.586 13 C 0.071 3.929 14 C 0.542 3.458 15 O -0.606 6.606 16 C -0.170 4.170 17 C -0.071 4.071 18 C -0.155 4.155 19 C -0.045 4.045 20 C -0.138 4.138 21 C -0.208 4.208 22 C 0.043 3.957 23 N -0.599 5.599 24 H 0.415 0.585 25 C 0.108 3.892 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.268 0.732 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.156 0.844 34 H 0.167 0.833 35 H 0.160 0.840 36 H 0.180 0.820 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.607 -3.926 18.879 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.127 3.873 3 H 0.051 0.949 4 C -0.565 4.565 5 H 0.069 0.931 6 C -0.173 4.173 7 N -0.572 5.572 8 Si 0.743 3.257 9 H -0.215 1.215 10 H -0.202 1.202 11 H -0.150 1.150 12 N -0.315 5.315 13 C -0.070 4.070 14 C 0.333 3.667 15 O -0.490 6.490 16 C -0.176 4.176 17 C -0.090 4.090 18 C -0.173 4.173 19 C -0.064 4.064 20 C -0.143 4.143 21 C -0.232 4.232 22 C -0.082 4.082 23 N -0.200 5.200 24 H 0.252 0.748 25 C -0.003 4.003 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.174 0.826 34 H 0.184 0.816 35 H 0.178 0.822 36 H 0.197 0.803 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.741 -3.219 18.498 18.976 hybrid contribution -0.061 1.297 -1.448 1.945 sum 2.680 -1.923 17.050 17.366 Atomic orbital electron populations 1.22290 0.95748 1.02282 1.00399 1.18968 0.92660 0.93065 0.82625 0.94900 1.21324 1.44413 0.96379 0.94391 0.93118 1.25646 0.94058 1.01849 0.95702 1.70043 1.41089 1.40221 1.05884 0.86270 0.80885 0.80351 0.78179 1.21452 1.20240 1.14980 1.48025 1.48609 1.13328 1.21499 1.22316 1.01241 0.80724 1.02759 1.18884 0.78497 0.86586 0.82711 1.90637 1.64633 1.16607 1.77160 1.18997 0.94699 1.02907 1.00971 1.21803 1.00538 0.91747 0.94933 1.21230 0.96059 1.02200 0.97846 1.21128 0.93622 0.93507 0.98114 1.19669 0.96821 0.99875 0.97976 1.22071 0.96523 1.00088 1.04515 1.22590 0.90950 1.01377 0.93296 1.42142 1.14598 1.30841 1.32448 0.74847 1.18389 0.91317 0.93054 0.97517 0.91538 0.93550 0.92343 0.92285 0.89576 0.89767 0.91490 0.82641 0.81571 0.82249 0.80306 0.77851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.11 8.85 71.98 0.64 -5.47 16 2 C 0.23 11.20 2.20 44.25 0.10 11.30 16 3 H 0.03 1.79 5.13 -2.39 -0.01 1.78 16 4 C -0.53 -29.65 8.67 25.60 0.22 -29.42 16 5 H 0.05 3.07 6.93 -2.91 -0.02 3.05 16 6 C 0.03 1.58 5.47 84.66 0.46 2.04 16 7 N -0.93 -57.73 13.96 21.45 0.30 -57.43 16 8 Si 0.92 44.84 26.42 68.60 1.81 46.65 16 9 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.23 -10.03 5.13 99.48 0.51 -9.52 16 12 N -0.59 -25.12 2.75 -830.59 -2.29 -27.41 16 13 C 0.07 2.33 7.92 127.77 1.01 3.34 16 14 C 0.54 23.83 7.37 86.69 0.64 24.47 16 15 O -0.61 -30.73 15.55 -4.03 -0.06 -30.79 16 16 C -0.17 -6.07 5.38 -20.03 -0.11 -6.18 16 17 C -0.07 -1.88 7.49 22.56 0.17 -1.72 16 18 C -0.15 -3.13 10.00 22.21 0.22 -2.90 16 19 C -0.05 -0.95 10.09 22.51 0.23 -0.73 16 20 C -0.14 -3.78 6.37 -20.21 -0.13 -3.91 16 21 C -0.21 -4.61 11.09 23.53 0.26 -4.35 16 22 C 0.04 1.00 11.82 82.98 0.98 1.98 16 23 N -0.60 -19.17 5.95 -186.99 -1.11 -20.28 16 24 H 0.42 14.19 8.34 -92.71 -0.77 13.42 16 25 C 0.11 3.70 6.87 39.44 0.27 3.97 16 26 H 0.07 2.49 7.85 -2.39 -0.02 2.47 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.06 2.42 5.38 -2.38 -0.01 2.41 16 29 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 30 H 0.09 2.13 7.02 -2.39 -0.02 2.12 16 31 H 0.08 2.48 5.50 -2.39 -0.01 2.47 16 32 H 0.07 2.39 6.66 -2.39 -0.02 2.37 16 33 H 0.16 3.48 4.94 -2.91 -0.01 3.47 16 34 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 35 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.20 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -76.63 299.99 3.76 -72.87 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.14 Total: 23.97 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 4.97 Total: -7.58 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -3.10 Total: -105.12 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.06 Total: -30.79 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.81 Total: 46.65 kcal Total: -76.63 3.76 -72.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088733404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.897 kcal (2) G-P(sol) polarization free energy of solvation -76.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds