Wall clock time and date at job start Mon Mar 30 2020 01:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46745 * 2 1 4 4 N 1.46497 * 109.47605 * 119.99979 * 2 1 3 5 5 C 1.36885 * 119.99909 * 306.08668 * 4 2 1 6 6 H 1.08004 * 119.99862 * 153.52798 * 5 4 2 7 7 C 1.39032 * 120.00271 * 333.52920 * 5 4 2 8 8 N 1.31377 * 119.99823 * 46.98435 * 7 5 4 9 9 Si 1.86798 * 119.99976 * 226.98636 * 7 5 4 10 10 H 1.48492 * 109.47335 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46807 * 120.00282 * 9 7 5 12 12 H 1.48505 * 109.46621 * 239.99830 * 9 7 5 13 13 C 1.34771 * 120.00100 * 126.08375 * 4 2 1 14 14 O 1.21637 * 120.00081 * 185.79597 * 13 4 2 15 15 C 1.47396 * 119.99960 * 5.51201 * 13 4 2 16 16 C 1.39419 * 120.20837 * 49.31565 * 15 13 4 17 17 C 1.38297 * 120.48877 * 179.97438 * 16 15 13 18 18 C 1.37927 * 120.59471 * 359.97438 * 17 16 15 19 19 C 1.39562 * 120.00130 * 0.02562 * 18 17 16 20 20 C 1.46573 * 133.94442 * 180.02562 * 19 18 17 21 21 C 1.34225 * 106.88772 * 180.02562 * 20 19 18 22 22 N 1.36890 * 109.87637 * 359.97438 * 21 20 19 23 23 H 0.96999 * 125.01391 * 179.97438 * 22 21 20 24 24 C 1.37125 * 109.97303 * 359.76627 * 22 21 20 25 25 H 1.09002 * 109.46980 * 259.95569 * 1 2 3 26 26 H 1.08998 * 109.47371 * 19.95834 * 1 2 3 27 27 H 1.09005 * 109.46932 * 139.96215 * 1 2 3 28 28 H 1.08999 * 109.47357 * 240.00733 * 2 1 3 29 29 H 1.08997 * 109.47205 * 209.02078 * 3 2 1 30 30 H 1.09003 * 109.47273 * 329.02362 * 3 2 1 31 31 H 1.09005 * 109.46882 * 89.02310 * 3 2 1 32 32 H 0.96994 * 120.00329 * 180.02562 * 8 7 5 33 33 H 1.08008 * 119.75706 * 0.02562 * 16 15 13 34 34 H 1.07999 * 119.70627 * 179.97438 * 17 16 15 35 35 H 1.08008 * 119.99785 * 179.97438 * 18 17 16 36 36 H 1.07994 * 126.55817 * 359.97438 * 20 19 18 37 37 H 1.07996 * 125.05850 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0185 -0.6906 1.1961 5 6 1.5884 -0.2999 2.4355 6 1 1.5752 -1.0084 3.2507 7 6 1.1683 1.0088 2.6451 8 7 0.3387 1.5759 1.7989 9 14 1.7836 1.9607 4.1299 10 1 2.7008 1.1030 4.9225 11 1 2.5093 3.1736 3.6743 12 1 0.6293 2.3621 4.9735 13 6 2.8912 -1.7105 1.0762 14 8 3.2157 -2.3519 2.0575 15 6 3.4478 -2.0527 -0.2450 16 6 3.9905 -1.0576 -1.0568 17 6 4.5147 -1.3723 -2.2972 18 6 4.5100 -2.6746 -2.7515 19 6 3.9724 -3.6887 -1.9575 20 6 3.8116 -5.1357 -2.1266 21 6 3.2170 -5.5946 -1.0142 22 7 2.9859 -4.5592 -0.1491 23 1 2.5659 -4.6443 0.7211 24 6 3.4399 -3.3848 -0.6922 25 1 -0.3633 -0.1792 1.0119 26 1 -0.3634 0.9659 -0.3508 27 1 -0.3633 -0.7868 -0.6611 28 1 1.8934 -0.5137 -0.8900 29 1 3.0083 1.4857 -0.4985 30 1 1.3303 2.0788 -0.5289 31 1 2.1445 1.7910 1.0276 32 1 0.0460 2.4890 1.9448 33 1 4.0023 -0.0334 -0.7140 34 1 4.9316 -0.5913 -2.9159 35 1 4.9216 -2.9095 -3.7221 36 1 4.1130 -5.7207 -2.9829 37 1 2.9601 -6.6271 -0.8289 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089869518.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:57 Heat of formation + Delta-G solvation = 66.798425 kcal Electronic energy + Delta-G solvation = -21420.447586 eV Core-core repulsion = 18358.067460 eV Total energy + Delta-G solvation = -3062.380125 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.92785 -38.78406 -36.26429 -35.76569 -32.25148 -31.32704 -30.46326 -29.07921 -28.48248 -25.98193 -25.28819 -22.93332 -21.38990 -20.85900 -20.58047 -19.34949 -17.28005 -16.56015 -16.45412 -15.58419 -14.89291 -14.44766 -14.16273 -14.13102 -13.81858 -13.32624 -13.12150 -12.81141 -12.74565 -12.44853 -12.09957 -11.78182 -11.71404 -11.32893 -11.27025 -10.95326 -10.83940 -10.60968 -10.37693 -10.24454 -9.95733 -9.67894 -9.23114 -8.45705 -8.26571 -7.86419 -7.68506 -7.29660 -6.61678 -3.78368 1.33122 2.03706 2.94290 3.08904 3.26672 3.37473 3.55343 3.84284 4.07819 4.32682 4.75812 4.84979 5.00078 5.23903 5.44621 5.49068 5.70655 5.75540 5.88001 5.95619 6.14842 6.25120 6.34799 6.38705 6.45237 6.76341 6.83514 6.89081 6.92334 7.00179 7.04355 7.10030 7.20512 7.42816 7.48094 7.51829 7.86300 7.89684 8.17803 8.46400 9.10375 9.35902 9.98077 10.30458 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026614 B = 0.006335 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.816092 B = 4419.080284 C = 4785.630413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.134 3.866 3 C -0.145 4.145 4 N -0.421 5.421 5 C -0.346 4.346 6 H 0.103 0.897 7 C 0.068 3.932 8 N -0.800 5.800 9 Si 0.872 3.128 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.283 1.283 13 C 0.474 3.526 14 O -0.594 6.594 15 C -0.099 4.099 16 C -0.083 4.083 17 C -0.151 4.151 18 C -0.075 4.075 19 C -0.119 4.119 20 C -0.213 4.213 21 C 0.047 3.953 22 N -0.583 5.583 23 H 0.421 0.579 24 C 0.132 3.868 25 H 0.094 0.906 26 H 0.053 0.947 27 H 0.000 1.000 28 H 0.063 0.937 29 H 0.017 0.983 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.268 0.732 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.143 0.857 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.901 -5.044 -9.130 10.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.031 3.969 3 C -0.203 4.203 4 N -0.138 5.138 5 C -0.471 4.471 6 H 0.121 0.879 7 C -0.141 4.141 8 N -0.433 5.433 9 Si 0.696 3.304 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.209 1.209 13 C 0.263 3.737 14 O -0.482 6.482 15 C -0.105 4.105 16 C -0.103 4.103 17 C -0.170 4.170 18 C -0.094 4.094 19 C -0.123 4.123 20 C -0.239 4.239 21 C -0.080 4.080 22 N -0.184 5.184 23 H 0.259 0.741 24 C 0.023 3.977 25 H 0.113 0.887 26 H 0.072 0.928 27 H 0.019 0.981 28 H 0.081 0.919 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.149 0.851 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.161 0.839 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.805 -5.186 -8.573 10.405 hybrid contribution -0.014 0.648 0.983 1.177 sum 2.791 -4.538 -7.590 9.273 Atomic orbital electron populations 1.22039 0.94000 0.98100 1.02777 1.21119 0.95828 0.92952 0.87033 1.22576 0.97147 0.96630 1.03921 1.43924 1.35383 1.28290 1.06191 1.19163 1.46473 0.94800 0.86660 0.87891 1.25154 0.94248 0.96917 0.97808 1.70914 1.20408 1.14237 1.37718 0.86811 0.80291 0.79984 0.83313 1.18792 1.20243 1.20945 1.17763 0.83653 0.84890 0.87348 1.90603 1.64588 1.53899 1.39075 1.19276 1.04435 0.90231 0.96579 1.21228 0.97006 0.98575 0.93476 1.20741 1.03459 0.96068 0.96695 1.20462 0.98800 0.91581 0.98532 1.19146 1.04736 0.93900 0.94555 1.21581 1.09875 0.92531 0.99876 1.21804 1.02315 0.92877 0.91041 1.41792 1.52548 1.05340 1.18758 0.74135 1.18061 0.99351 0.86861 0.93458 0.88709 0.92802 0.98088 0.91900 0.96439 0.93089 0.89556 0.92067 0.85098 0.86091 0.86409 0.83947 0.81619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.46 8.17 37.16 0.30 -2.16 16 2 C 0.13 2.98 2.34 -67.93 -0.16 2.82 16 3 C -0.14 -3.04 8.08 37.16 0.30 -2.74 16 4 N -0.42 -10.57 2.56 -108.95 -0.28 -10.85 16 5 C -0.35 -9.26 8.01 -15.00 -0.12 -9.38 16 6 H 0.10 2.98 7.63 -52.48 -0.40 2.58 16 7 C 0.07 1.69 3.25 -17.45 -0.06 1.63 16 8 N -0.80 -18.86 6.73 55.50 0.37 -18.49 16 9 Si 0.87 19.46 29.65 -169.99 -5.04 14.42 16 10 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 C 0.47 11.92 7.14 -12.54 -0.09 11.83 16 14 O -0.59 -16.69 16.75 5.24 0.09 -16.60 16 15 C -0.10 -2.13 4.78 -104.87 -0.50 -2.63 16 16 C -0.08 -1.55 7.52 -39.12 -0.29 -1.84 16 17 C -0.15 -2.35 10.00 -39.67 -0.40 -2.74 16 18 C -0.07 -1.14 10.09 -39.20 -0.40 -1.53 16 19 C -0.12 -2.02 6.37 -105.15 -0.67 -2.69 16 20 C -0.21 -3.00 11.09 -37.64 -0.42 -3.42 16 21 C 0.05 0.63 11.82 -16.71 -0.20 0.44 16 22 N -0.58 -10.00 6.04 -10.44 -0.06 -10.07 16 23 H 0.42 7.18 8.96 -40.82 -0.37 6.82 16 24 C 0.13 2.59 6.95 -83.75 -0.58 2.01 16 25 H 0.09 2.36 5.53 -51.93 -0.29 2.08 16 26 H 0.05 1.13 6.81 -51.93 -0.35 0.78 16 27 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.06 1.33 5.03 -51.93 -0.26 1.07 16 29 H 0.02 0.32 6.31 -51.93 -0.33 -0.01 16 30 H 0.05 1.00 7.34 -51.93 -0.38 0.62 16 31 H 0.09 2.02 4.53 -51.93 -0.24 1.78 16 32 H 0.27 5.96 8.31 -40.82 -0.34 5.62 16 33 H 0.13 2.44 5.41 -52.48 -0.28 2.16 16 34 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 36 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.17 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 294.90 15.07 4.44 4.44 Total: -1.00 -29.59 294.90 -7.90 -37.49 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -4.15 Total: 10.07 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -3.28 Total: -10.42 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.03 Total: -39.40 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: 0.09 Total: -16.60 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.04 Total: 14.42 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.59 -7.90 -37.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089869518.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.288 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds