Wall clock time and date at job start Mon Mar 30 2020 01:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46745 * 2 1 4 4 N 1.46497 * 109.47605 * 119.99979 * 2 1 3 5 5 C 1.36885 * 119.99909 * 306.08668 * 4 2 1 6 6 H 1.08004 * 119.99862 * 153.52798 * 5 4 2 7 7 C 1.39032 * 120.00271 * 333.52920 * 5 4 2 8 8 N 1.31377 * 119.99823 * 46.98435 * 7 5 4 9 9 Si 1.86798 * 119.99976 * 226.98636 * 7 5 4 10 10 H 1.48492 * 109.47335 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46807 * 120.00282 * 9 7 5 12 12 H 1.48505 * 109.46621 * 239.99830 * 9 7 5 13 13 C 1.34771 * 120.00100 * 126.08375 * 4 2 1 14 14 O 1.21637 * 120.00081 * 185.79597 * 13 4 2 15 15 C 1.47396 * 119.99960 * 5.51201 * 13 4 2 16 16 C 1.39419 * 120.20837 * 49.31565 * 15 13 4 17 17 C 1.38297 * 120.48877 * 179.97438 * 16 15 13 18 18 C 1.37927 * 120.59471 * 359.97438 * 17 16 15 19 19 C 1.39562 * 120.00130 * 0.02562 * 18 17 16 20 20 C 1.46573 * 133.94442 * 180.02562 * 19 18 17 21 21 C 1.34225 * 106.88772 * 180.02562 * 20 19 18 22 22 N 1.36890 * 109.87637 * 359.97438 * 21 20 19 23 23 H 0.96999 * 125.01391 * 179.97438 * 22 21 20 24 24 C 1.37125 * 109.97303 * 359.76627 * 22 21 20 25 25 H 1.09002 * 109.46980 * 259.95569 * 1 2 3 26 26 H 1.08998 * 109.47371 * 19.95834 * 1 2 3 27 27 H 1.09005 * 109.46932 * 139.96215 * 1 2 3 28 28 H 1.08999 * 109.47357 * 240.00733 * 2 1 3 29 29 H 1.08997 * 109.47205 * 209.02078 * 3 2 1 30 30 H 1.09003 * 109.47273 * 329.02362 * 3 2 1 31 31 H 1.09005 * 109.46882 * 89.02310 * 3 2 1 32 32 H 0.96994 * 120.00329 * 180.02562 * 8 7 5 33 33 H 1.08008 * 119.75706 * 0.02562 * 16 15 13 34 34 H 1.07999 * 119.70627 * 179.97438 * 17 16 15 35 35 H 1.08008 * 119.99785 * 179.97438 * 18 17 16 36 36 H 1.07994 * 126.55817 * 359.97438 * 20 19 18 37 37 H 1.07996 * 125.05850 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0185 -0.6906 1.1961 5 6 1.5884 -0.2999 2.4355 6 1 1.5752 -1.0084 3.2507 7 6 1.1683 1.0088 2.6451 8 7 0.3387 1.5759 1.7989 9 14 1.7836 1.9607 4.1299 10 1 2.7008 1.1030 4.9225 11 1 2.5093 3.1736 3.6743 12 1 0.6293 2.3621 4.9735 13 6 2.8912 -1.7105 1.0762 14 8 3.2157 -2.3519 2.0575 15 6 3.4478 -2.0527 -0.2450 16 6 3.9905 -1.0576 -1.0568 17 6 4.5147 -1.3723 -2.2972 18 6 4.5100 -2.6746 -2.7515 19 6 3.9724 -3.6887 -1.9575 20 6 3.8116 -5.1357 -2.1266 21 6 3.2170 -5.5946 -1.0142 22 7 2.9859 -4.5592 -0.1491 23 1 2.5659 -4.6443 0.7211 24 6 3.4399 -3.3848 -0.6922 25 1 -0.3633 -0.1792 1.0119 26 1 -0.3634 0.9659 -0.3508 27 1 -0.3633 -0.7868 -0.6611 28 1 1.8934 -0.5137 -0.8900 29 1 3.0083 1.4857 -0.4985 30 1 1.3303 2.0788 -0.5289 31 1 2.1445 1.7910 1.0276 32 1 0.0460 2.4890 1.9448 33 1 4.0023 -0.0334 -0.7140 34 1 4.9316 -0.5913 -2.9159 35 1 4.9216 -2.9095 -3.7221 36 1 4.1130 -5.7207 -2.9829 37 1 2.9601 -6.6271 -0.8289 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089869518.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:56 Heat of formation + Delta-G solvation = 49.430356 kcal Electronic energy + Delta-G solvation = -21421.200722 eV Core-core repulsion = 18358.067460 eV Total energy + Delta-G solvation = -3063.133261 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.21501 -40.53397 -37.71010 -37.55123 -34.10324 -32.72119 -32.29794 -30.37718 -29.72287 -27.72149 -27.12588 -24.41493 -22.79279 -22.46116 -21.95972 -20.84444 -18.69599 -18.46874 -18.02114 -16.97217 -16.50594 -16.25006 -15.76788 -15.57099 -15.22533 -14.88637 -14.72923 -14.51420 -14.25295 -13.85509 -13.62177 -13.54054 -13.27431 -13.03854 -12.61588 -12.46832 -12.43232 -12.27736 -12.14194 -12.04883 -11.68057 -11.41895 -10.61310 -10.31884 -10.16869 -9.59209 -9.13728 -8.56463 -8.53524 -5.78702 0.01750 0.73395 1.25692 1.40879 1.51744 1.77757 2.10399 2.25828 2.35540 2.74626 2.99419 3.11097 3.82020 3.97856 4.13192 4.20264 4.25346 4.42797 4.55645 4.63733 4.71248 4.76049 4.94860 4.99073 5.08491 5.11463 5.21051 5.27445 5.41481 5.50617 5.53963 5.63717 5.73303 5.85113 5.90808 6.01686 6.14937 6.27317 6.54642 6.64305 7.16108 7.45483 8.08287 8.38327 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026614 B = 0.006335 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.816092 B = 4419.080284 C = 4785.630413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.134 3.866 3 C -0.139 4.139 4 N -0.426 5.426 5 C -0.394 4.394 6 H 0.062 0.938 7 C 0.059 3.941 8 N -0.791 5.791 9 Si 0.927 3.073 10 H -0.290 1.290 11 H -0.262 1.262 12 H -0.270 1.270 13 C 0.461 3.539 14 O -0.644 6.644 15 C -0.138 4.138 16 C -0.087 4.087 17 C -0.149 4.149 18 C -0.059 4.059 19 C -0.132 4.132 20 C -0.211 4.211 21 C 0.048 3.952 22 N -0.598 5.598 23 H 0.414 0.586 24 C 0.098 3.902 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.010 0.990 28 H 0.075 0.925 29 H 0.037 0.963 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.279 0.721 33 H 0.124 0.876 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.181 0.819 37 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.588 -4.781 -12.241 13.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.031 3.969 3 C -0.197 4.197 4 N -0.142 5.142 5 C -0.519 4.519 6 H 0.080 0.920 7 C -0.153 4.153 8 N -0.422 5.422 9 Si 0.750 3.250 10 H -0.216 1.216 11 H -0.187 1.187 12 H -0.196 1.196 13 C 0.253 3.747 14 O -0.535 6.535 15 C -0.144 4.144 16 C -0.107 4.107 17 C -0.168 4.168 18 C -0.078 4.078 19 C -0.137 4.137 20 C -0.235 4.235 21 C -0.077 4.077 22 N -0.199 5.199 23 H 0.250 0.750 24 C -0.012 4.012 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.029 0.971 28 H 0.093 0.907 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.142 0.858 34 H 0.177 0.823 35 H 0.178 0.822 36 H 0.198 0.802 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 3.463 -4.894 -11.731 13.174 hybrid contribution -0.246 0.515 1.893 1.977 sum 3.217 -4.379 -9.837 11.239 Atomic orbital electron populations 1.21912 0.94081 0.98962 1.01044 1.21254 0.95719 0.93579 0.86361 1.22466 0.98682 0.95746 1.02766 1.44010 1.35170 1.28560 1.06416 1.18817 1.50314 0.95676 0.87062 0.92014 1.25453 0.93404 0.96415 1.00021 1.70876 1.18773 1.14598 1.37929 0.86023 0.79527 0.78633 0.80821 1.21611 1.18654 1.19581 1.18505 0.83218 0.84343 0.88654 1.90528 1.66196 1.55483 1.41293 1.19100 1.07494 0.92218 0.95552 1.21301 0.97157 0.97662 0.94562 1.21107 1.02614 0.97557 0.95525 1.20996 0.96456 0.90758 0.99551 1.19684 1.04447 0.95962 0.93586 1.22049 1.09264 0.91209 1.01023 1.22612 1.01105 0.93870 0.90120 1.42044 1.52863 1.05898 1.19075 0.75010 1.18379 1.00796 0.86856 0.95158 0.91843 0.91691 0.97120 0.90694 0.94401 0.91623 0.92003 0.90925 0.85792 0.82340 0.82166 0.80211 0.77426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.53 8.17 71.98 0.59 -3.94 16 2 C 0.13 5.98 2.34 44.99 0.11 6.09 16 3 C -0.14 -5.70 8.08 71.98 0.58 -5.12 16 4 N -0.43 -22.47 2.56 -616.84 -1.58 -24.05 16 5 C -0.39 -22.43 8.01 84.10 0.67 -21.75 16 6 H 0.06 3.93 7.63 -2.91 -0.02 3.91 16 7 C 0.06 2.98 3.25 84.95 0.28 3.25 16 8 N -0.79 -37.14 6.73 21.68 0.15 -37.00 16 9 Si 0.93 40.84 29.65 68.60 2.03 42.87 16 10 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 11 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 12 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 13 C 0.46 24.70 7.14 86.66 0.62 25.32 16 14 O -0.64 -39.19 16.75 -4.15 -0.07 -39.26 16 15 C -0.14 -6.07 4.78 -20.03 -0.10 -6.16 16 16 C -0.09 -3.20 7.52 22.57 0.17 -3.03 16 17 C -0.15 -4.19 10.00 22.21 0.22 -3.96 16 18 C -0.06 -1.57 10.09 22.52 0.23 -1.34 16 19 C -0.13 -4.17 6.37 -20.21 -0.13 -4.30 16 20 C -0.21 -5.21 11.09 23.53 0.26 -4.95 16 21 C 0.05 1.20 11.82 82.99 0.98 2.18 16 22 N -0.60 -20.81 6.04 -186.96 -1.13 -21.94 16 23 H 0.41 15.05 8.96 -92.71 -0.83 14.22 16 24 C 0.10 3.86 6.95 39.45 0.27 4.13 16 25 H 0.06 3.24 5.53 -2.39 -0.01 3.23 16 26 H 0.06 2.67 6.81 -2.39 -0.02 2.65 16 27 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 28 H 0.08 3.17 5.03 -2.39 -0.01 3.16 16 29 H 0.04 1.37 6.31 -2.39 -0.02 1.36 16 30 H 0.06 2.46 7.34 -2.39 -0.02 2.44 16 31 H 0.06 2.86 4.53 -2.38 -0.01 2.84 16 32 H 0.28 12.03 8.31 -92.71 -0.77 11.26 16 33 H 0.12 4.59 5.41 -2.91 -0.02 4.58 16 34 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 35 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 36 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.21 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -69.37 294.90 4.44 -64.93 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.28 Total: 28.01 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 4.75 Total: -13.57 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -2.56 Total: -82.98 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -0.07 Total: -39.26 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -69.37 4.44 -64.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089869518.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.358 kcal (2) G-P(sol) polarization free energy of solvation -69.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds