Wall clock time and date at job start Mon Mar 30 2020 01:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36345 * 125.63612 * 2 1 4 4 C 1.34855 * 108.21653 * 179.97438 * 3 2 1 5 5 C 1.40881 * 107.41882 * 359.97438 * 4 3 2 6 6 C 1.50707 * 126.29258 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.46941 * 90.02246 * 6 5 4 8 8 C 1.39781 * 119.99639 * 180.02562 * 7 6 5 9 9 C 1.38946 * 120.00700 * 359.72761 * 8 7 6 10 10 C 1.38015 * 119.99353 * 179.71937 * 9 8 7 11 11 C 1.38906 * 120.00292 * 0.55590 * 10 9 8 12 12 O 1.35792 * 119.98967 * 179.70030 * 11 10 9 13 13 C 1.34819 * 116.99849 * 174.47843 * 12 11 10 14 14 H 1.07998 * 119.99560 * 5.06153 * 13 12 11 15 15 C 1.38612 * 120.00165 * 185.05620 * 13 12 11 16 16 N 1.31582 * 120.00332 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99924 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47270 * 59.99887 * 17 15 13 19 19 H 1.48508 * 109.46924 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47154 * 299.99613 * 17 15 13 21 21 C 1.38901 * 120.01117 * 359.72059 * 11 10 9 22 22 C 1.38002 * 120.00551 * 0.02562 * 21 11 10 23 23 C 1.34850 * 107.41775 * 0.23056 * 5 4 3 24 24 H 1.09001 * 109.47047 * 90.03085 * 1 2 3 25 25 H 1.09000 * 109.47382 * 210.02286 * 1 2 3 26 26 H 1.08996 * 109.47602 * 330.03030 * 1 2 3 27 27 H 1.07997 * 125.88811 * 359.97007 * 3 2 1 28 28 H 1.07998 * 126.28712 * 180.02562 * 4 3 2 29 29 H 1.08994 * 109.46999 * 210.02675 * 6 5 4 30 30 H 1.09001 * 109.46632 * 330.02493 * 6 5 4 31 31 H 0.96991 * 120.00135 * 0.02562 * 7 6 5 32 32 H 1.08005 * 120.00509 * 0.02562 * 9 8 7 33 33 H 1.07997 * 119.99824 * 180.25862 * 10 9 8 34 34 H 0.96996 * 120.00319 * 179.97438 * 16 15 13 35 35 H 1.07997 * 119.99185 * 179.97438 * 21 11 10 36 36 H 1.08001 * 120.00329 * 179.97438 * 22 21 11 37 37 H 1.08008 * 125.89023 * 179.74870 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2593 1.1081 0.0000 4 6 3.5460 0.7044 0.0006 5 6 3.5460 -0.7044 0.0015 6 6 4.7607 -1.5965 0.0019 7 7 5.1542 -1.8850 1.3832 8 6 6.2622 -2.6979 1.6389 9 6 6.9870 -3.2370 0.5831 10 6 8.0844 -4.0349 0.8359 11 6 8.4574 -4.3084 2.1457 12 8 9.5335 -5.0985 2.3940 13 6 9.9108 -5.2318 3.6815 14 1 9.3163 -4.7891 4.4669 15 6 11.0616 -5.9371 3.9970 16 7 11.7856 -6.4770 3.0401 17 14 11.5840 -6.1223 5.7809 18 1 10.5156 -6.8211 6.5395 19 1 12.8383 -6.9144 5.8497 20 1 11.8131 -4.7793 6.3716 21 6 7.7296 -3.7743 3.2013 22 6 6.6353 -2.9722 2.9490 23 6 2.2593 -1.1080 -0.0037 24 1 -0.3633 -0.0006 -1.0277 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5133 27 1 1.9171 2.1324 -0.0005 28 1 4.4165 1.3437 0.0011 29 1 4.5267 -2.5290 -0.5116 30 1 5.5803 -1.0943 -0.5121 31 1 4.6460 -1.5119 2.1203 32 1 6.6946 -3.0276 -0.4353 33 1 8.6503 -4.4505 0.0153 34 1 12.5911 -6.9702 3.2608 35 1 8.0196 -3.9875 4.2195 36 1 6.0692 -2.5572 3.7698 37 1 1.9171 -2.1325 -0.0082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091007222.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:36 Heat of formation + Delta-G solvation = 58.944115 kcal Electronic energy + Delta-G solvation = -19118.416478 eV Core-core repulsion = 16055.695764 eV Total energy + Delta-G solvation = -3062.720714 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.33927 -38.88372 -36.97445 -34.69416 -32.79627 -31.93174 -30.15751 -29.52917 -27.91669 -26.53073 -25.22873 -24.12913 -21.88178 -20.59065 -20.49839 -19.62861 -17.76999 -17.25553 -16.94800 -15.96917 -15.52203 -14.89971 -14.36846 -14.26350 -14.11452 -13.73790 -13.45033 -13.31533 -13.08642 -12.93662 -12.60655 -12.54563 -12.31266 -12.08091 -11.73886 -11.48190 -11.20641 -11.15197 -10.82691 -10.51964 -10.29219 -9.14685 -9.05143 -8.71341 -8.33933 -8.30494 -8.05922 -6.27197 -6.23709 -3.81886 2.04591 2.31168 2.69551 2.71423 2.75449 3.23343 3.24852 3.27041 4.12045 4.29900 4.40654 4.75342 4.78854 4.79804 4.98533 4.99835 5.21118 5.27391 5.35356 5.52901 5.73232 5.77233 5.84362 5.92709 5.99842 6.32045 6.34379 6.36899 6.67427 6.81926 6.97676 7.02072 7.03687 7.16135 7.25620 7.40726 7.56383 7.76612 8.13830 8.19953 8.43297 9.21013 9.97063 10.93951 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.051626 B = 0.002791 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.235061 B =10028.301516 C =10282.129191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.455 5.455 3 C -0.023 4.023 4 C -0.182 4.182 5 C -0.178 4.178 6 C 0.208 3.792 7 N -0.755 5.755 8 C 0.128 3.872 9 C -0.148 4.148 10 C -0.149 4.149 11 C 0.110 3.890 12 O -0.190 6.190 13 C -0.385 4.385 14 H 0.087 0.913 15 C 0.035 3.965 16 N -0.871 5.871 17 Si 0.937 3.063 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.272 1.272 21 C -0.189 4.189 22 C -0.145 4.145 23 C 0.002 3.998 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.160 0.840 28 H 0.136 0.864 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.390 0.610 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.267 0.733 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.122 12.996 -5.296 25.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.131 5.131 3 C -0.152 4.152 4 C -0.207 4.207 5 C -0.185 4.185 6 C 0.083 3.917 7 N -0.390 5.390 8 C 0.030 3.970 9 C -0.170 4.170 10 C -0.169 4.169 11 C 0.058 3.942 12 O -0.095 6.095 13 C -0.462 4.462 14 H 0.104 0.896 15 C -0.167 4.167 16 N -0.508 5.508 17 Si 0.762 3.238 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.197 1.197 21 C -0.209 4.209 22 C -0.167 4.167 23 C -0.129 4.129 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.177 0.823 28 H 0.154 0.846 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.223 0.777 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.077 0.923 35 H 0.144 0.856 36 H 0.122 0.878 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -21.142 12.724 -5.666 25.318 hybrid contribution -0.069 0.160 1.248 1.260 sum -21.211 12.884 -4.418 25.208 Atomic orbital electron populations 1.21996 0.77432 1.04256 1.03085 1.43967 1.06078 1.06245 1.56793 1.21797 0.90495 0.91377 1.11549 1.20873 0.95956 0.94586 1.09286 1.19552 0.93509 0.94187 1.11289 1.19299 0.92180 0.95655 0.84614 1.44344 1.32049 1.56960 1.05681 1.17446 0.90292 0.96053 0.93215 1.20182 0.97562 1.02435 0.96865 1.20026 0.99240 1.03164 0.94488 1.19232 0.89667 0.92315 0.92970 1.83985 1.39461 1.57330 1.28771 1.21178 1.08677 1.35332 0.81034 0.89575 1.25195 0.95289 0.96637 0.99620 1.70039 1.15262 1.33474 1.32005 0.85851 0.78258 0.78599 0.81068 1.19745 1.20481 1.19724 1.20976 0.97671 1.02677 0.99547 1.20227 0.99418 1.03142 0.93960 1.21729 0.90111 0.91412 1.09600 0.91073 0.89912 0.89985 0.82306 0.84631 0.92965 0.92628 0.77656 0.87096 0.86594 0.92341 0.85626 0.87756 0.82123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 11.12 59.84 0.67 1.00 16 2 N -0.45 -3.88 3.15 -124.54 -0.39 -4.27 16 3 C -0.02 -0.21 11.43 -16.75 -0.19 -0.40 16 4 C -0.18 -1.99 10.81 -39.78 -0.43 -2.42 16 5 C -0.18 -2.07 5.50 -104.82 -0.58 -2.65 16 6 C 0.21 2.69 5.41 -5.19 -0.03 2.66 16 7 N -0.75 -11.21 5.73 -59.76 -0.34 -11.56 16 8 C 0.13 2.35 6.66 -83.71 -0.56 1.79 16 9 C -0.15 -2.82 9.30 -39.40 -0.37 -3.19 16 10 C -0.15 -3.32 9.98 -39.42 -0.39 -3.71 16 11 C 0.11 2.79 6.65 -39.09 -0.26 2.54 16 12 O -0.19 -5.67 9.76 -0.05 0.00 -5.67 16 13 C -0.39 -11.22 9.48 30.87 0.29 -10.93 16 14 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 15 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 16 N -0.87 -26.56 13.67 55.48 0.76 -25.80 16 17 Si 0.94 21.37 29.55 -169.99 -5.02 16.35 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 C -0.19 -4.31 9.16 -39.42 -0.36 -4.67 16 22 C -0.15 -2.83 9.89 -39.40 -0.39 -3.22 16 23 C 0.00 0.02 11.35 -16.75 -0.19 -0.17 16 24 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 28 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 29 H 0.05 0.67 7.94 -51.93 -0.41 0.25 16 30 H 0.06 0.74 7.96 -51.93 -0.41 0.33 16 31 H 0.39 5.42 8.48 -40.82 -0.35 5.07 16 32 H 0.11 1.82 6.73 -52.48 -0.35 1.47 16 33 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 34 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.13 2.86 5.63 -52.49 -0.30 2.56 16 36 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.16 1.36 8.06 -52.48 -0.42 0.93 16 LS Contribution 320.36 15.07 4.83 4.83 Total: -1.00 -33.64 320.36 -7.66 -41.31 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -4.61 Total: 7.27 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -2.88 Total: -22.46 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.02 Total: -41.62 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: 0.00 Total: -5.67 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.64 -7.66 -41.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091007222.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.253 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds