Wall clock time and date at job start Mon Mar 30 2020 01:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36345 * 125.63612 * 2 1 4 4 C 1.34855 * 108.21653 * 179.97438 * 3 2 1 5 5 C 1.40881 * 107.41882 * 359.97438 * 4 3 2 6 6 C 1.50707 * 126.29258 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.46941 * 90.02246 * 6 5 4 8 8 C 1.39781 * 119.99639 * 180.02562 * 7 6 5 9 9 C 1.38946 * 120.00700 * 359.72761 * 8 7 6 10 10 C 1.38015 * 119.99353 * 179.71937 * 9 8 7 11 11 C 1.38906 * 120.00292 * 0.55590 * 10 9 8 12 12 O 1.35792 * 119.98967 * 179.70030 * 11 10 9 13 13 C 1.34819 * 116.99849 * 174.47843 * 12 11 10 14 14 H 1.07998 * 119.99560 * 5.06153 * 13 12 11 15 15 C 1.38612 * 120.00165 * 185.05620 * 13 12 11 16 16 N 1.31582 * 120.00332 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99924 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47270 * 59.99887 * 17 15 13 19 19 H 1.48508 * 109.46924 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47154 * 299.99613 * 17 15 13 21 21 C 1.38901 * 120.01117 * 359.72059 * 11 10 9 22 22 C 1.38002 * 120.00551 * 0.02562 * 21 11 10 23 23 C 1.34850 * 107.41775 * 0.23056 * 5 4 3 24 24 H 1.09001 * 109.47047 * 90.03085 * 1 2 3 25 25 H 1.09000 * 109.47382 * 210.02286 * 1 2 3 26 26 H 1.08996 * 109.47602 * 330.03030 * 1 2 3 27 27 H 1.07997 * 125.88811 * 359.97007 * 3 2 1 28 28 H 1.07998 * 126.28712 * 180.02562 * 4 3 2 29 29 H 1.08994 * 109.46999 * 210.02675 * 6 5 4 30 30 H 1.09001 * 109.46632 * 330.02493 * 6 5 4 31 31 H 0.96991 * 120.00135 * 0.02562 * 7 6 5 32 32 H 1.08005 * 120.00509 * 0.02562 * 9 8 7 33 33 H 1.07997 * 119.99824 * 180.25862 * 10 9 8 34 34 H 0.96996 * 120.00319 * 179.97438 * 16 15 13 35 35 H 1.07997 * 119.99185 * 179.97438 * 21 11 10 36 36 H 1.08001 * 120.00329 * 179.97438 * 22 21 11 37 37 H 1.08008 * 125.89023 * 179.74870 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2593 1.1081 0.0000 4 6 3.5460 0.7044 0.0006 5 6 3.5460 -0.7044 0.0015 6 6 4.7607 -1.5965 0.0019 7 7 5.1542 -1.8850 1.3832 8 6 6.2622 -2.6979 1.6389 9 6 6.9870 -3.2370 0.5831 10 6 8.0844 -4.0349 0.8359 11 6 8.4574 -4.3084 2.1457 12 8 9.5335 -5.0985 2.3940 13 6 9.9108 -5.2318 3.6815 14 1 9.3163 -4.7891 4.4669 15 6 11.0616 -5.9371 3.9970 16 7 11.7856 -6.4770 3.0401 17 14 11.5840 -6.1223 5.7809 18 1 10.5156 -6.8211 6.5395 19 1 12.8383 -6.9144 5.8497 20 1 11.8131 -4.7793 6.3716 21 6 7.7296 -3.7743 3.2013 22 6 6.6353 -2.9722 2.9490 23 6 2.2593 -1.1080 -0.0037 24 1 -0.3633 -0.0006 -1.0277 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5133 27 1 1.9171 2.1324 -0.0005 28 1 4.4165 1.3437 0.0011 29 1 4.5267 -2.5290 -0.5116 30 1 5.5803 -1.0943 -0.5121 31 1 4.6460 -1.5119 2.1203 32 1 6.6946 -3.0276 -0.4353 33 1 8.6503 -4.4505 0.0153 34 1 12.5911 -6.9702 3.2608 35 1 8.0196 -3.9875 4.2195 36 1 6.0692 -2.5572 3.7698 37 1 1.9171 -2.1325 -0.0082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091007222.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:36 Heat of formation + Delta-G solvation = 38.064964 kcal Electronic energy + Delta-G solvation = -19119.321866 eV Core-core repulsion = 16055.695764 eV Total energy + Delta-G solvation = -3063.626102 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.04118 -40.64468 -38.68742 -36.01923 -34.18170 -33.47750 -31.79998 -30.56078 -28.96400 -27.80772 -26.89357 -25.32329 -23.49868 -22.26545 -21.18819 -20.50873 -19.59718 -18.81801 -18.16674 -17.33965 -16.56817 -16.18377 -15.96062 -15.43142 -15.37482 -15.11673 -15.00564 -14.76978 -14.32886 -14.03106 -13.81220 -13.46814 -13.41603 -13.25813 -13.13400 -12.87952 -12.71937 -12.54711 -12.32277 -12.21782 -12.07702 -11.06873 -10.87188 -10.12748 -9.73731 -9.43362 -9.04897 -8.36673 -7.87189 -6.00145 0.62378 0.97877 1.33264 1.37726 1.49425 1.54084 1.90008 2.16434 2.24944 2.94476 3.04217 3.29029 3.71291 4.01247 4.15665 4.22123 4.22670 4.26132 4.41546 4.48466 4.54133 4.61020 4.72573 4.74688 4.82235 4.93128 5.01451 5.15728 5.26348 5.32498 5.51495 5.55485 5.59405 5.81908 6.02143 6.06077 6.14312 6.29679 6.53961 6.69122 7.08001 7.11924 7.96618 8.87796 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.051626 B = 0.002791 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.235061 B =10028.301516 C =10282.129191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.453 5.453 3 C -0.018 4.018 4 C -0.210 4.210 5 C -0.202 4.202 6 C 0.207 3.793 7 N -0.740 5.740 8 C 0.154 3.846 9 C -0.147 4.147 10 C -0.154 4.154 11 C 0.060 3.940 12 O -0.243 6.243 13 C -0.406 4.406 14 H 0.098 0.902 15 C -0.030 4.030 16 N -0.928 5.928 17 Si 1.017 2.983 18 H -0.258 1.258 19 H -0.273 1.273 20 H -0.259 1.259 21 C -0.192 4.192 22 C -0.148 4.148 23 C 0.000 4.000 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.186 0.814 28 H 0.132 0.868 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.399 0.601 32 H 0.142 0.858 33 H 0.113 0.887 34 H 0.269 0.731 35 H 0.119 0.881 36 H 0.136 0.864 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.329 14.900 -4.685 28.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.128 5.128 3 C -0.148 4.148 4 C -0.235 4.235 5 C -0.209 4.209 6 C 0.083 3.917 7 N -0.374 5.374 8 C 0.053 3.947 9 C -0.170 4.170 10 C -0.173 4.173 11 C 0.010 3.990 12 O -0.151 6.151 13 C -0.483 4.483 14 H 0.115 0.885 15 C -0.226 4.226 16 N -0.567 5.567 17 Si 0.837 3.163 18 H -0.182 1.182 19 H -0.198 1.198 20 H -0.183 1.183 21 C -0.211 4.211 22 C -0.171 4.171 23 C -0.132 4.132 24 H 0.101 0.899 25 H 0.112 0.888 26 H 0.118 0.882 27 H 0.203 0.797 28 H 0.150 0.850 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.234 0.766 32 H 0.159 0.841 33 H 0.132 0.868 34 H 0.078 0.922 35 H 0.137 0.863 36 H 0.154 0.846 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -24.450 14.688 -5.079 28.971 hybrid contribution 0.573 -0.200 0.868 1.059 sum -23.877 14.487 -4.210 28.244 Atomic orbital electron populations 1.22295 0.74950 1.05746 1.04376 1.44265 1.07625 1.05589 1.55305 1.22208 0.90042 0.92691 1.09811 1.21014 0.96985 0.94510 1.10980 1.19463 0.93559 0.94332 1.13553 1.19366 0.92966 0.96293 0.83086 1.44492 1.30429 1.55217 1.07268 1.17587 0.90123 0.94376 0.92624 1.20434 0.96396 1.01395 0.98728 1.20235 1.00153 1.03494 0.93465 1.19722 0.90094 0.94269 0.94903 1.83934 1.41909 1.60066 1.29189 1.21717 1.09363 1.35641 0.81566 0.88508 1.26533 0.94953 0.95969 1.05099 1.70201 1.16247 1.35386 1.34914 0.84674 0.78102 0.79191 0.74375 1.18248 1.19771 1.18335 1.21038 0.98439 1.03021 0.98635 1.20476 0.98593 1.02419 0.95592 1.21956 0.89952 0.92508 1.08788 0.89853 0.88820 0.88242 0.79670 0.84975 0.92364 0.92956 0.76640 0.84053 0.86844 0.92176 0.86325 0.84596 0.80767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 11.12 127.77 1.42 1.77 16 2 N -0.45 -6.22 3.15 -547.92 -1.72 -7.94 16 3 C -0.02 -0.27 11.43 83.21 0.95 0.68 16 4 C -0.21 -4.17 10.81 22.14 0.24 -3.93 16 5 C -0.20 -4.21 5.50 -19.99 -0.11 -4.32 16 6 C 0.21 4.85 5.41 85.63 0.46 5.31 16 7 N -0.74 -19.83 5.73 -342.97 -1.96 -21.80 16 8 C 0.15 5.31 6.66 38.21 0.25 5.56 16 9 C -0.15 -5.41 9.30 22.39 0.21 -5.20 16 10 C -0.15 -6.98 9.98 22.38 0.22 -6.76 16 11 C 0.06 3.14 6.65 22.59 0.15 3.29 16 12 O -0.24 -15.35 9.76 -23.10 -0.23 -15.57 16 13 C -0.41 -24.74 9.48 67.91 0.64 -24.10 16 14 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 15 C -0.03 -1.75 5.49 84.82 0.47 -1.29 16 16 N -0.93 -59.28 13.67 21.61 0.30 -58.98 16 17 Si 1.02 44.73 29.55 68.60 2.03 46.76 16 18 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 21 C -0.19 -8.85 9.16 22.37 0.20 -8.64 16 22 C -0.15 -5.53 9.89 22.38 0.22 -5.31 16 23 C 0.00 0.00 11.35 83.21 0.94 0.95 16 24 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 25 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 28 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 29 H 0.06 1.32 7.94 -2.39 -0.02 1.30 16 30 H 0.05 1.28 7.96 -2.39 -0.02 1.26 16 31 H 0.40 9.75 8.48 -92.71 -0.79 8.96 16 32 H 0.14 4.30 6.73 -2.91 -0.02 4.28 16 33 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 34 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 35 H 0.12 5.53 5.63 -2.91 -0.02 5.51 16 36 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 37 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -77.01 320.36 4.99 -72.03 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.30 Total: 27.50 kcal Atomic # 6 Polarization: -48.27 SS G_CDS: 6.28 Total: -41.98 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -3.39 Total: -88.72 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.23 Total: -15.57 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -77.01 4.99 -72.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091007222.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.091 kcal (2) G-P(sol) polarization free energy of solvation -77.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds