Wall clock time and date at job start Mon Mar 30 2020 01:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36343 * 125.63499 * 2 1 4 4 C 1.34855 * 108.21430 * 180.02562 * 3 2 1 5 5 C 1.40885 * 107.42041 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.29194 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.46731 * 90.03017 * 6 5 4 8 8 C 1.39678 * 119.99747 * 180.02562 * 7 6 5 9 9 C 1.39002 * 120.04040 * 359.71575 * 8 7 6 10 10 C 1.38152 * 120.06301 * 179.70117 * 9 8 7 11 11 C 1.38175 * 120.13892 * 0.60616 * 10 9 8 12 12 C 1.38915 * 120.07691 * 359.66993 * 11 10 9 13 13 O 1.35756 * 120.02604 * 180.02562 * 12 11 10 14 14 C 1.34836 * 116.99773 * 174.48682 * 13 12 11 15 15 H 1.08007 * 119.99562 * 5.05987 * 14 13 12 16 16 C 1.38647 * 119.99752 * 185.05624 * 14 13 12 17 17 N 1.31554 * 120.00585 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99802 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46988 * 59.99769 * 18 16 14 20 20 H 1.48494 * 109.47223 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46719 * 300.00221 * 18 16 14 22 22 C 1.38745 * 120.03741 * 179.97438 * 8 7 6 23 23 C 1.34849 * 107.41917 * 0.02562 * 5 4 3 24 24 H 1.09007 * 109.47168 * 89.97636 * 1 2 3 25 25 H 1.09005 * 109.47240 * 209.97884 * 1 2 3 26 26 H 1.09003 * 109.47461 * 329.97774 * 1 2 3 27 27 H 1.07996 * 125.88907 * 0.04823 * 3 2 1 28 28 H 1.08001 * 126.28817 * 179.73613 * 4 3 2 29 29 H 1.09002 * 109.47292 * 210.02313 * 6 5 4 30 30 H 1.09002 * 109.47330 * 330.02651 * 6 5 4 31 31 H 0.96993 * 120.00264 * 359.97438 * 7 6 5 32 32 H 1.08000 * 119.97041 * 359.97438 * 9 8 7 33 33 H 1.07993 * 119.93190 * 180.27381 * 10 9 8 34 34 H 1.07999 * 119.96102 * 179.69857 * 11 10 9 35 35 H 0.96998 * 120.00414 * 179.97438 * 17 16 14 36 36 H 1.08001 * 120.07382 * 359.97393 * 22 8 7 37 37 H 1.08000 * 125.89550 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1081 0.0000 4 6 3.5460 0.7044 -0.0006 5 6 3.5460 -0.7045 -0.0003 6 6 4.7607 -1.5965 -0.0013 7 7 5.1551 -1.8858 1.3796 8 6 6.2624 -2.6983 1.6340 9 6 6.9872 -3.2375 0.5775 10 6 8.0862 -4.0361 0.8285 11 6 8.4610 -4.3116 2.1296 12 6 7.7374 -3.7805 3.1899 13 8 8.1068 -4.0514 4.4678 14 6 7.4341 -3.4145 5.4475 15 1 6.5888 -2.7882 5.2031 16 6 7.8277 -3.5635 6.7686 17 7 8.8576 -4.3259 7.0662 18 14 6.8953 -2.6816 8.1260 19 1 5.4780 -3.1248 8.1216 20 1 7.5108 -3.0028 9.4387 21 1 6.9562 -1.2157 7.8966 22 6 6.6370 -2.9724 2.9415 23 6 2.2594 -1.1081 -0.0002 24 1 -0.3634 0.0004 -1.0277 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3634 0.8898 0.5142 27 1 1.9171 2.1324 0.0007 28 1 4.4165 1.3436 -0.0047 29 1 4.5264 -2.5288 -0.5152 30 1 5.5800 -1.0941 -0.5156 31 1 4.6477 -1.5126 2.1172 32 1 6.6936 -3.0284 -0.4405 33 1 8.6504 -4.4503 0.0061 34 1 9.3177 -4.9403 2.3225 35 1 9.1331 -4.4299 7.9904 36 1 6.0734 -2.5578 3.7642 37 1 1.9171 -2.1325 -0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091007999.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:39 Heat of formation + Delta-G solvation = 55.801892 kcal Electronic energy + Delta-G solvation = -19399.774913 eV Core-core repulsion = 16336.917942 eV Total energy + Delta-G solvation = -3062.856971 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.30476 -38.89866 -36.92696 -34.83694 -32.89062 -32.07388 -30.04693 -28.79775 -28.08670 -26.81684 -25.13612 -24.44940 -21.62533 -20.57250 -20.45208 -19.57961 -17.80263 -17.44700 -16.86014 -15.49550 -15.38695 -14.92151 -14.50879 -14.21262 -14.11870 -14.06323 -13.54765 -13.37654 -13.05059 -12.92276 -12.73877 -12.52619 -12.22417 -12.03198 -11.65523 -11.54702 -11.18975 -10.81860 -10.70089 -10.51464 -10.31457 -9.28990 -9.24877 -8.67795 -8.66787 -8.27307 -7.22575 -6.61367 -6.32777 -3.91715 2.08119 2.50472 2.70327 2.74945 2.78359 3.19273 3.21559 3.23261 4.06476 4.26469 4.44836 4.79500 4.81855 4.83741 5.01783 5.04018 5.22522 5.24480 5.37643 5.48067 5.74737 5.81698 5.88395 6.02120 6.13066 6.36784 6.39501 6.49304 6.77888 6.79371 6.85560 7.06285 7.18043 7.19897 7.25486 7.50956 7.61108 7.81510 8.14428 8.18901 8.40051 9.13607 9.87605 10.85853 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.004066 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.622108 B = 6884.680284 C = 8238.743496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.455 5.455 3 C -0.023 4.023 4 C -0.182 4.182 5 C -0.180 4.180 6 C 0.206 3.794 7 N -0.749 5.749 8 C 0.251 3.749 9 C -0.280 4.280 10 C -0.040 4.040 11 C -0.239 4.239 12 C 0.190 3.810 13 O -0.180 6.180 14 C -0.388 4.388 15 H 0.090 0.910 16 C 0.038 3.962 17 N -0.867 5.867 18 Si 0.938 3.062 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.271 1.271 22 C -0.304 4.304 23 C 0.004 3.996 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.160 0.840 28 H 0.136 0.864 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.394 0.606 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.269 0.731 36 H 0.123 0.877 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.423 8.833 -14.102 22.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.131 5.131 3 C -0.152 4.152 4 C -0.206 4.206 5 C -0.187 4.187 6 C 0.081 3.919 7 N -0.380 5.380 8 C 0.149 3.851 9 C -0.303 4.303 10 C -0.059 4.059 11 C -0.260 4.260 12 C 0.135 3.865 13 O -0.084 6.084 14 C -0.464 4.464 15 H 0.107 0.893 16 C -0.166 4.166 17 N -0.503 5.503 18 Si 0.763 3.237 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.196 1.196 22 C -0.328 4.328 23 C -0.127 4.127 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.177 0.823 28 H 0.154 0.846 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.228 0.772 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.078 0.922 36 H 0.141 0.859 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -15.532 8.630 -13.996 22.619 hybrid contribution -0.831 0.715 0.968 1.463 sum -16.364 9.345 -13.028 22.909 Atomic orbital electron populations 1.22004 0.77397 1.04326 1.03048 1.43972 1.06107 1.06239 1.56740 1.21800 0.90480 0.91393 1.11486 1.20872 0.95990 0.94545 1.09230 1.19530 0.93462 0.94203 1.11552 1.19354 0.92343 0.95853 0.84329 1.44683 1.31582 1.55519 1.06246 1.17506 0.86012 0.88573 0.93007 1.20082 1.02646 1.11131 0.96458 1.20369 0.94927 0.95507 0.95093 1.20019 1.04583 1.10568 0.90840 1.19068 0.90873 0.90560 0.85955 1.83986 1.55243 1.59051 1.10083 1.21255 1.12535 1.27837 0.84793 0.89278 1.25243 0.96675 0.97246 0.97390 1.70030 1.24610 1.36133 1.19488 0.85826 0.79088 0.79395 0.79349 1.19674 1.20363 1.19622 1.20500 1.04673 1.12743 0.94835 1.21732 0.90106 0.91444 1.09454 0.91074 0.89878 0.89962 0.82263 0.84603 0.92648 0.92316 0.77185 0.87822 0.87292 0.87028 0.92161 0.85941 0.82089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 11.12 59.84 0.67 1.05 16 2 N -0.45 -4.25 3.15 -124.53 -0.39 -4.64 16 3 C -0.02 -0.22 11.43 -16.75 -0.19 -0.42 16 4 C -0.18 -2.13 10.81 -39.78 -0.43 -2.56 16 5 C -0.18 -2.23 5.50 -104.82 -0.58 -2.81 16 6 C 0.21 2.80 5.41 -5.19 -0.03 2.78 16 7 N -0.75 -12.30 5.72 -59.82 -0.34 -12.64 16 8 C 0.25 4.99 6.65 -83.81 -0.56 4.43 16 9 C -0.28 -5.27 9.31 -39.33 -0.37 -5.64 16 10 C -0.04 -0.77 10.03 -39.64 -0.40 -1.17 16 11 C -0.24 -5.44 9.99 -39.35 -0.39 -5.83 16 12 C 0.19 4.87 6.64 -39.14 -0.26 4.61 16 13 O -0.18 -5.39 9.76 0.01 0.00 -5.39 16 14 C -0.39 -11.29 9.49 30.88 0.29 -10.99 16 15 H 0.09 2.42 5.20 -52.48 -0.27 2.15 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.87 -26.24 13.67 55.48 0.76 -25.48 16 18 Si 0.94 21.23 29.55 -169.99 -5.02 16.21 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 C -0.30 -7.05 9.01 -39.20 -0.35 -7.41 16 23 C 0.00 0.04 11.35 -16.75 -0.19 -0.15 16 24 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 28 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.06 0.73 7.94 -51.93 -0.41 0.32 16 30 H 0.06 0.81 7.96 -51.93 -0.41 0.39 16 31 H 0.39 6.35 8.47 -40.82 -0.35 6.00 16 32 H 0.10 1.69 6.73 -52.49 -0.35 1.33 16 33 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.11 2.45 8.06 -52.49 -0.42 2.03 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 36 H 0.12 2.87 5.64 -52.49 -0.30 2.58 16 37 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 320.36 15.07 4.83 4.83 Total: -1.00 -33.59 320.36 -7.66 -41.25 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -4.61 Total: 8.96 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -2.88 Total: -23.11 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.02 Total: -42.76 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: 0.00 Total: -5.39 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.59 -7.66 -41.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091007999.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.056 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds