Wall clock time and date at job start Mon Mar 30 2020 01:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36343 * 125.63499 * 2 1 4 4 C 1.34855 * 108.21430 * 180.02562 * 3 2 1 5 5 C 1.40885 * 107.42041 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.29194 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.46731 * 90.03017 * 6 5 4 8 8 C 1.39678 * 119.99747 * 180.02562 * 7 6 5 9 9 C 1.39002 * 120.04040 * 359.71575 * 8 7 6 10 10 C 1.38152 * 120.06301 * 179.70117 * 9 8 7 11 11 C 1.38175 * 120.13892 * 0.60616 * 10 9 8 12 12 C 1.38915 * 120.07691 * 359.66993 * 11 10 9 13 13 O 1.35756 * 120.02604 * 180.02562 * 12 11 10 14 14 C 1.34836 * 116.99773 * 174.48682 * 13 12 11 15 15 H 1.08007 * 119.99562 * 5.05987 * 14 13 12 16 16 C 1.38647 * 119.99752 * 185.05624 * 14 13 12 17 17 N 1.31554 * 120.00585 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99802 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46988 * 59.99769 * 18 16 14 20 20 H 1.48494 * 109.47223 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46719 * 300.00221 * 18 16 14 22 22 C 1.38745 * 120.03741 * 179.97438 * 8 7 6 23 23 C 1.34849 * 107.41917 * 0.02562 * 5 4 3 24 24 H 1.09007 * 109.47168 * 89.97636 * 1 2 3 25 25 H 1.09005 * 109.47240 * 209.97884 * 1 2 3 26 26 H 1.09003 * 109.47461 * 329.97774 * 1 2 3 27 27 H 1.07996 * 125.88907 * 0.04823 * 3 2 1 28 28 H 1.08001 * 126.28817 * 179.73613 * 4 3 2 29 29 H 1.09002 * 109.47292 * 210.02313 * 6 5 4 30 30 H 1.09002 * 109.47330 * 330.02651 * 6 5 4 31 31 H 0.96993 * 120.00264 * 359.97438 * 7 6 5 32 32 H 1.08000 * 119.97041 * 359.97438 * 9 8 7 33 33 H 1.07993 * 119.93190 * 180.27381 * 10 9 8 34 34 H 1.07999 * 119.96102 * 179.69857 * 11 10 9 35 35 H 0.96998 * 120.00414 * 179.97438 * 17 16 14 36 36 H 1.08001 * 120.07382 * 359.97393 * 22 8 7 37 37 H 1.08000 * 125.89550 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1081 0.0000 4 6 3.5460 0.7044 -0.0006 5 6 3.5460 -0.7045 -0.0003 6 6 4.7607 -1.5965 -0.0013 7 7 5.1551 -1.8858 1.3796 8 6 6.2624 -2.6983 1.6340 9 6 6.9872 -3.2375 0.5775 10 6 8.0862 -4.0361 0.8285 11 6 8.4610 -4.3116 2.1296 12 6 7.7374 -3.7805 3.1899 13 8 8.1068 -4.0514 4.4678 14 6 7.4341 -3.4145 5.4475 15 1 6.5888 -2.7882 5.2031 16 6 7.8277 -3.5635 6.7686 17 7 8.8576 -4.3259 7.0662 18 14 6.8953 -2.6816 8.1260 19 1 5.4780 -3.1248 8.1216 20 1 7.5108 -3.0028 9.4387 21 1 6.9562 -1.2157 7.8966 22 6 6.6370 -2.9724 2.9415 23 6 2.2594 -1.1081 -0.0002 24 1 -0.3634 0.0004 -1.0277 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3634 0.8898 0.5142 27 1 1.9171 2.1324 0.0007 28 1 4.4165 1.3436 -0.0047 29 1 4.5264 -2.5288 -0.5152 30 1 5.5800 -1.0941 -0.5156 31 1 4.6477 -1.5126 2.1172 32 1 6.6936 -3.0284 -0.4405 33 1 8.6504 -4.4503 0.0061 34 1 9.3177 -4.9403 2.3225 35 1 9.1331 -4.4299 7.9904 36 1 6.0734 -2.5578 3.7642 37 1 1.9171 -2.1325 -0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091007999.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:39 Heat of formation + Delta-G solvation = 34.863056 kcal Electronic energy + Delta-G solvation = -19400.682889 eV Core-core repulsion = 16336.917942 eV Total energy + Delta-G solvation = -3063.764947 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.06963 -40.69576 -38.66797 -36.23082 -34.24849 -33.70221 -31.30169 -30.29828 -29.32932 -27.79076 -27.16623 -25.44417 -23.34953 -22.18401 -21.21894 -20.56798 -19.66022 -18.99458 -17.97714 -16.89883 -16.70961 -16.26205 -16.00861 -15.71210 -15.55703 -15.26711 -15.03568 -14.78828 -14.42506 -14.07474 -13.83210 -13.47941 -13.47174 -13.18433 -13.08700 -12.75528 -12.65582 -12.44890 -12.33034 -12.18625 -12.00828 -11.27693 -10.91118 -10.56871 -9.46354 -9.08024 -9.06460 -8.43633 -8.16743 -6.11964 0.80450 0.96688 1.29953 1.34068 1.46329 1.50918 1.85773 2.13986 2.20029 2.91542 2.94681 3.30374 3.62739 3.98338 4.18832 4.21100 4.25818 4.37524 4.45415 4.46708 4.51084 4.65703 4.72454 4.74743 4.80631 4.89917 5.10694 5.17747 5.18308 5.23920 5.51435 5.52543 5.78857 5.84274 6.00761 6.08369 6.16229 6.26795 6.51309 6.67387 6.92612 7.01762 7.85527 8.79994 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.004066 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.622108 B = 6884.680284 C = 8238.743496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.453 5.453 3 C -0.018 4.018 4 C -0.211 4.211 5 C -0.204 4.204 6 C 0.207 3.793 7 N -0.739 5.739 8 C 0.256 3.744 9 C -0.265 4.265 10 C -0.025 4.025 11 C -0.264 4.264 12 C 0.153 3.847 13 O -0.233 6.233 14 C -0.412 4.412 15 H 0.097 0.903 16 C -0.024 4.024 17 N -0.923 5.923 18 Si 1.018 2.982 19 H -0.258 1.258 20 H -0.269 1.269 21 H -0.259 1.259 22 C -0.319 4.319 23 C 0.000 4.000 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.187 0.813 28 H 0.133 0.867 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.395 0.605 32 H 0.142 0.858 33 H 0.153 0.847 34 H 0.107 0.893 35 H 0.272 0.728 36 H 0.110 0.890 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.096 10.347 -16.143 26.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.128 5.128 3 C -0.148 4.148 4 C -0.235 4.235 5 C -0.211 4.211 6 C 0.083 3.917 7 N -0.368 5.368 8 C 0.151 3.849 9 C -0.288 4.288 10 C -0.043 4.043 11 C -0.285 4.285 12 C 0.102 3.898 13 O -0.139 6.139 14 C -0.488 4.488 15 H 0.114 0.886 16 C -0.220 4.220 17 N -0.561 5.561 18 Si 0.837 3.163 19 H -0.182 1.182 20 H -0.194 1.194 21 H -0.184 1.184 22 C -0.343 4.343 23 C -0.132 4.132 24 H 0.104 0.896 25 H 0.111 0.889 26 H 0.117 0.883 27 H 0.204 0.796 28 H 0.151 0.849 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.229 0.771 32 H 0.159 0.841 33 H 0.171 0.829 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -18.265 10.172 -16.110 26.394 hybrid contribution -0.130 0.311 1.249 1.294 sum -18.395 10.483 -14.861 25.867 Atomic orbital electron populations 1.22305 0.74897 1.05694 1.04478 1.44277 1.07675 1.05588 1.55270 1.22220 0.90046 0.92720 1.09773 1.21026 0.97028 0.94523 1.10933 1.19481 0.93607 0.94376 1.13677 1.19471 0.93173 0.96707 0.82314 1.44883 1.30078 1.53943 1.07905 1.17613 0.86830 0.88438 0.91984 1.20559 1.01356 1.09068 0.97804 1.20831 0.94764 0.94138 0.94589 1.20259 1.04928 1.11453 0.91835 1.19633 0.92511 0.92281 0.85383 1.83945 1.57034 1.61178 1.11738 1.21750 1.13140 1.28381 0.85558 0.88557 1.26571 0.97690 0.97956 0.99833 1.70181 1.27044 1.38607 1.20288 0.84671 0.77907 0.78277 0.75460 1.18222 1.19361 1.18371 1.20499 1.04431 1.13150 0.96229 1.21976 0.89996 0.92553 1.08706 0.89576 0.88926 0.88317 0.79594 0.84927 0.91553 0.92142 0.77114 0.84060 0.82916 0.87505 0.91876 0.87186 0.80721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 11.12 127.77 1.42 1.89 16 2 N -0.45 -7.12 3.15 -547.89 -1.72 -8.85 16 3 C -0.02 -0.30 11.43 83.21 0.95 0.65 16 4 C -0.21 -4.59 10.81 22.14 0.24 -4.35 16 5 C -0.20 -4.65 5.50 -19.99 -0.11 -4.76 16 6 C 0.21 5.12 5.41 85.63 0.46 5.59 16 7 N -0.74 -23.06 5.72 -343.18 -1.96 -25.03 16 8 C 0.26 9.87 6.65 38.20 0.25 10.13 16 9 C -0.27 -9.17 9.31 22.43 0.21 -8.96 16 10 C -0.02 -0.89 10.03 22.23 0.22 -0.67 16 11 C -0.26 -12.19 9.99 22.42 0.22 -11.96 16 12 C 0.15 8.22 6.64 22.56 0.15 8.37 16 13 O -0.23 -14.82 9.76 -22.86 -0.22 -15.04 16 14 C -0.41 -25.28 9.49 67.92 0.64 -24.64 16 15 H 0.10 5.50 5.20 -2.91 -0.02 5.48 16 16 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 17 N -0.92 -58.62 13.67 21.61 0.30 -58.32 16 18 Si 1.02 44.57 29.55 68.60 2.03 46.60 16 19 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 C -0.32 -15.20 9.01 22.52 0.20 -15.00 16 23 C 0.00 0.00 11.35 83.21 0.94 0.95 16 24 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 25 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 26 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.19 2.01 8.06 -2.91 -0.02 1.99 16 28 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 29 H 0.07 1.52 7.94 -2.39 -0.02 1.50 16 30 H 0.06 1.49 7.96 -2.39 -0.02 1.47 16 31 H 0.39 12.34 8.47 -92.71 -0.79 11.56 16 32 H 0.14 3.89 6.73 -2.91 -0.02 3.87 16 33 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 34 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 35 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 36 H 0.11 5.39 5.64 -2.91 -0.02 5.38 16 37 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -77.65 320.36 4.99 -72.66 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.30 Total: 31.67 kcal Atomic # 6 Polarization: -49.97 SS G_CDS: 6.28 Total: -43.69 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -3.39 Total: -92.20 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.22 Total: -15.04 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -77.65 4.99 -72.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091007999.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.522 kcal (2) G-P(sol) polarization free energy of solvation -77.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds