Wall clock time and date at job start Mon Mar 30 2020 01:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47080 * 2 1 4 4 H 1.08994 * 109.47567 * 305.00833 * 3 2 1 5 5 C 1.50696 * 109.47149 * 185.00337 * 3 2 1 6 6 H 1.08007 * 120.00305 * 240.00591 * 5 3 2 7 7 C 1.37878 * 120.00085 * 60.00226 * 5 3 2 8 8 N 1.31516 * 119.99960 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00340 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47044 * 90.00257 * 9 7 5 11 11 H 1.48504 * 109.47288 * 210.00516 * 9 7 5 12 12 H 1.48502 * 109.46859 * 330.00395 * 9 7 5 13 13 N 1.46505 * 109.46692 * 65.00756 * 3 2 1 14 14 C 1.34773 * 120.00095 * 275.00010 * 13 3 2 15 15 O 1.21603 * 119.99887 * 359.97438 * 14 13 3 16 16 C 1.47499 * 120.00112 * 179.72696 * 14 13 3 17 17 C 1.41192 * 126.37195 * 359.95667 * 16 14 13 18 18 C 1.37995 * 106.86741 * 179.90040 * 17 16 14 19 19 C 1.41382 * 131.98829 * 180.02562 * 18 17 16 20 20 C 1.35746 * 119.33224 * 180.32759 * 19 18 17 21 21 C 1.40829 * 119.71912 * 359.97438 * 20 19 18 22 22 C 1.34532 * 120.58228 * 0.02562 * 21 20 19 23 23 N 1.37439 * 120.74545 * 359.97438 * 22 21 20 24 24 C 1.35124 * 131.28185 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.47396 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46888 * 299.98914 * 1 2 3 27 27 H 1.08998 * 109.47562 * 59.98997 * 1 2 3 28 28 H 1.09005 * 109.46888 * 240.01086 * 2 1 3 29 29 H 1.08993 * 109.47875 * 120.00680 * 2 1 3 30 30 H 0.97000 * 120.00330 * 180.02562 * 8 7 5 31 31 H 0.97000 * 119.99792 * 94.99575 * 13 3 2 32 32 H 1.08004 * 126.56582 * 0.02562 * 17 16 14 33 33 H 1.07997 * 120.33631 * 0.34835 * 19 18 17 34 34 H 1.07994 * 120.13907 * 180.02562 * 20 19 18 35 35 H 1.07996 * 119.70761 * 180.02562 * 21 20 19 36 36 H 1.08003 * 119.62597 * 180.02562 * 22 21 20 37 37 H 1.08001 * 125.61772 * 359.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9817 -0.8417 5 6 3.5418 1.4444 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2281 8 7 3.4060 0.3377 -2.1735 9 14 6.0048 0.8814 -1.3821 10 1 6.5547 -0.3500 -0.7607 11 1 6.3827 0.9227 -2.8177 12 1 6.5568 2.0739 -0.6904 13 7 1.6525 2.0974 1.2520 14 6 0.4352 2.6642 1.3673 15 8 -0.3413 2.6325 0.4320 16 6 0.0428 3.3183 2.6298 17 6 0.8309 3.4277 3.7962 18 6 0.0761 4.1126 4.7266 19 6 0.3461 4.5094 6.0564 20 6 -0.6037 5.1814 6.7557 21 6 -1.8408 5.4740 6.1496 22 6 -2.0899 5.0929 4.8836 23 7 -1.1438 4.4115 4.1559 24 6 -1.1648 3.9339 2.8921 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.8290 -0.0607 -2.9501 31 1 2.2721 2.1229 1.9979 32 1 1.8333 3.0498 3.9333 33 1 1.2984 4.2805 6.5113 34 1 -0.4112 5.4911 7.7722 35 1 -2.5961 6.0090 6.7059 36 1 -3.0438 5.3258 4.4338 37 1 -1.9909 4.0180 2.2016 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097140585.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:26 Heat of formation + Delta-G solvation = 31.519285 kcal Electronic energy + Delta-G solvation = -20140.090196 eV Core-core repulsion = 17076.180253 eV Total energy + Delta-G solvation = -3063.909944 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.14125 -38.74472 -36.42389 -34.88574 -33.18298 -32.23502 -30.96990 -29.73192 -27.75154 -26.92214 -24.17820 -23.05301 -22.15052 -21.72203 -19.81698 -19.08079 -17.74548 -17.03793 -16.32694 -15.79978 -15.44417 -15.18471 -14.90928 -14.48710 -14.25759 -14.18559 -13.56518 -12.90695 -12.64651 -12.35823 -12.00089 -11.92994 -11.72327 -11.48860 -11.25622 -11.19070 -10.93732 -10.76854 -10.47574 -10.26525 -10.10088 -9.56307 -9.03744 -8.95318 -8.47176 -8.44146 -7.69522 -7.39781 -6.07026 -4.15930 0.70473 1.33575 2.42582 2.65445 3.27978 3.34795 3.37274 3.42736 4.20634 4.22484 4.38660 4.51701 4.67739 4.75156 4.95304 5.04642 5.24354 5.35827 5.49192 5.65456 5.79722 5.89148 6.05135 6.23112 6.33686 6.46811 6.54705 6.73989 6.77995 6.86566 7.13354 7.25403 7.28490 7.45043 7.55300 7.69337 7.82784 7.98086 8.24685 8.78168 8.85663 9.25511 9.51774 10.98386 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029279 B = 0.004136 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.086738 B = 6768.209098 C = 7432.606252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.699 5.699 14 C 0.570 3.430 15 O -0.553 6.553 16 C -0.155 4.155 17 C -0.162 4.162 18 C 0.020 3.980 19 C -0.072 4.072 20 C -0.142 4.142 21 C -0.143 4.143 22 C 0.044 3.956 23 N -0.345 5.345 24 C 0.010 3.990 25 H 0.021 0.979 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.099 0.901 29 H 0.031 0.969 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.152 0.848 33 H 0.141 0.859 34 H 0.131 0.869 35 H 0.142 0.858 36 H 0.159 0.841 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.139 8.184 16.693 20.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.346 5.346 14 C 0.356 3.644 15 O -0.434 6.434 16 C -0.162 4.162 17 C -0.187 4.187 18 C -0.084 4.084 19 C -0.091 4.091 20 C -0.162 4.162 21 C -0.163 4.163 22 C -0.074 4.074 23 N -0.009 5.009 24 C -0.123 4.123 25 H 0.040 0.960 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.117 0.883 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.221 0.779 32 H 0.170 0.830 33 H 0.159 0.841 34 H 0.148 0.852 35 H 0.160 0.840 36 H 0.177 0.823 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -8.865 8.158 15.850 19.908 hybrid contribution 1.221 0.000 0.304 1.258 sum -7.644 8.158 16.154 19.645 Atomic orbital electron populations 1.21844 0.98369 0.97960 1.01325 1.21933 0.92641 0.99801 1.02232 1.18795 0.94151 0.89177 0.80993 0.93221 1.21249 0.90766 1.38848 1.06242 0.92074 1.24880 0.98533 0.94880 0.95387 1.69899 1.35055 1.37713 1.09352 0.86465 0.84996 0.78415 0.77325 1.20584 1.21124 1.19865 1.46316 1.14348 1.55484 1.18459 1.17339 0.82802 0.78692 0.85614 1.90737 1.51824 1.60726 1.40089 1.20021 0.94910 1.05346 0.95910 1.21285 1.00394 1.04887 0.92092 1.18786 0.87077 1.07307 0.95185 1.20659 1.00157 0.97334 0.90931 1.20876 0.93625 1.01153 1.00573 1.20657 0.98796 1.02873 0.93965 1.21650 0.94175 0.98301 0.93302 1.41324 1.11972 1.36544 1.11039 1.22042 1.01053 1.04407 0.84832 0.95951 0.94151 0.93161 0.88316 0.95038 0.92622 0.77902 0.83015 0.84100 0.85151 0.84006 0.82326 0.80297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 37.16 0.32 -2.86 16 2 C -0.13 -3.17 5.45 -26.73 -0.15 -3.31 16 3 C 0.27 6.96 2.24 -69.08 -0.15 6.80 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 16 6 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.95 11.29 55.43 0.63 -24.32 16 9 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.70 -15.20 5.01 -55.98 -0.28 -15.48 16 14 C 0.57 12.11 6.38 -12.49 -0.08 12.03 16 15 O -0.55 -13.41 14.03 5.27 0.07 -13.34 16 16 C -0.15 -2.69 6.12 -105.07 -0.64 -3.33 16 17 C -0.16 -2.42 10.43 -38.55 -0.40 -2.82 16 18 C 0.02 0.27 6.70 -84.01 -0.56 -0.30 16 19 C -0.07 -0.75 10.11 -39.28 -0.40 -1.14 16 20 C -0.14 -1.22 10.07 -39.49 -0.40 -1.62 16 21 C -0.14 -1.16 9.97 -39.91 -0.40 -1.56 16 22 C 0.04 0.43 10.89 -16.35 -0.18 0.25 16 23 N -0.34 -4.53 2.92 -60.42 -0.18 -4.71 16 24 C 0.01 0.15 11.37 -16.17 -0.18 -0.03 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.04 0.92 5.65 -51.93 -0.29 0.62 16 27 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 28 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.39 7.45 7.51 -40.82 -0.31 7.14 16 32 H 0.15 1.98 7.53 -52.48 -0.40 1.58 16 33 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 35 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.18 2.44 8.06 -52.49 -0.42 2.01 16 LS Contribution 311.07 15.07 4.69 4.69 Total: -1.00 -31.95 311.07 -8.32 -40.27 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -4.61 Total: 7.88 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -3.62 Total: -10.75 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.17 Total: -44.51 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.07 Total: -13.34 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.95 -8.32 -40.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097140585.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.791 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds