Wall clock time and date at job start Mon Mar 30 2020 01:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47080 * 2 1 4 4 H 1.08994 * 109.47567 * 305.00833 * 3 2 1 5 5 C 1.50696 * 109.47149 * 185.00337 * 3 2 1 6 6 H 1.08007 * 120.00305 * 240.00591 * 5 3 2 7 7 C 1.37878 * 120.00085 * 60.00226 * 5 3 2 8 8 N 1.31516 * 119.99960 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00340 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47044 * 90.00257 * 9 7 5 11 11 H 1.48504 * 109.47288 * 210.00516 * 9 7 5 12 12 H 1.48502 * 109.46859 * 330.00395 * 9 7 5 13 13 N 1.46505 * 109.46692 * 65.00756 * 3 2 1 14 14 C 1.34773 * 120.00095 * 275.00010 * 13 3 2 15 15 O 1.21603 * 119.99887 * 359.97438 * 14 13 3 16 16 C 1.47499 * 120.00112 * 179.72696 * 14 13 3 17 17 C 1.41192 * 126.37195 * 359.95667 * 16 14 13 18 18 C 1.37995 * 106.86741 * 179.90040 * 17 16 14 19 19 C 1.41382 * 131.98829 * 180.02562 * 18 17 16 20 20 C 1.35746 * 119.33224 * 180.32759 * 19 18 17 21 21 C 1.40829 * 119.71912 * 359.97438 * 20 19 18 22 22 C 1.34532 * 120.58228 * 0.02562 * 21 20 19 23 23 N 1.37439 * 120.74545 * 359.97438 * 22 21 20 24 24 C 1.35124 * 131.28185 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.47396 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46888 * 299.98914 * 1 2 3 27 27 H 1.08998 * 109.47562 * 59.98997 * 1 2 3 28 28 H 1.09005 * 109.46888 * 240.01086 * 2 1 3 29 29 H 1.08993 * 109.47875 * 120.00680 * 2 1 3 30 30 H 0.97000 * 120.00330 * 180.02562 * 8 7 5 31 31 H 0.97000 * 119.99792 * 94.99575 * 13 3 2 32 32 H 1.08004 * 126.56582 * 0.02562 * 17 16 14 33 33 H 1.07997 * 120.33631 * 0.34835 * 19 18 17 34 34 H 1.07994 * 120.13907 * 180.02562 * 20 19 18 35 35 H 1.07996 * 119.70761 * 180.02562 * 21 20 19 36 36 H 1.08003 * 119.62597 * 180.02562 * 22 21 20 37 37 H 1.08001 * 125.61772 * 359.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9817 -0.8417 5 6 3.5418 1.4444 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2281 8 7 3.4060 0.3377 -2.1735 9 14 6.0048 0.8814 -1.3821 10 1 6.5547 -0.3500 -0.7607 11 1 6.3827 0.9227 -2.8177 12 1 6.5568 2.0739 -0.6904 13 7 1.6525 2.0974 1.2520 14 6 0.4352 2.6642 1.3673 15 8 -0.3413 2.6325 0.4320 16 6 0.0428 3.3183 2.6298 17 6 0.8309 3.4277 3.7962 18 6 0.0761 4.1126 4.7266 19 6 0.3461 4.5094 6.0564 20 6 -0.6037 5.1814 6.7557 21 6 -1.8408 5.4740 6.1496 22 6 -2.0899 5.0929 4.8836 23 7 -1.1438 4.4115 4.1559 24 6 -1.1648 3.9339 2.8921 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.8290 -0.0607 -2.9501 31 1 2.2721 2.1229 1.9979 32 1 1.8333 3.0498 3.9333 33 1 1.2984 4.2805 6.5113 34 1 -0.4112 5.4911 7.7722 35 1 -2.5961 6.0090 6.7059 36 1 -3.0438 5.3258 4.4338 37 1 -1.9909 4.0180 2.2016 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097140585.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:26 Heat of formation + Delta-G solvation = 12.392764 kcal Electronic energy + Delta-G solvation = -20140.919585 eV Core-core repulsion = 17076.180253 eV Total energy + Delta-G solvation = -3064.739332 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.13095 -40.43630 -37.40803 -36.75488 -34.39267 -33.92959 -32.77515 -30.87835 -28.94056 -28.61923 -25.58145 -24.59600 -23.47821 -22.67615 -21.61296 -20.79260 -18.98217 -18.38415 -17.49797 -17.21684 -16.88289 -16.53934 -16.20012 -15.94275 -15.79454 -15.27373 -14.87024 -14.58333 -14.27194 -13.81810 -13.49372 -13.35388 -13.15705 -12.93702 -12.78753 -12.64987 -12.40667 -12.16759 -12.14750 -12.03922 -11.58520 -11.39436 -11.03906 -10.77316 -10.50881 -9.72755 -9.42221 -8.31930 -8.14312 -6.31713 -0.12417 0.41817 1.19477 1.45789 1.46756 1.57288 1.70427 2.39524 2.59901 2.69827 2.78607 3.14987 3.65022 3.84886 3.94010 4.09645 4.26166 4.33093 4.50205 4.54669 4.58423 4.61029 4.78141 4.92645 4.96459 5.08799 5.26038 5.27640 5.37723 5.44789 5.46013 5.57732 5.64807 5.69147 5.82118 5.91174 6.00128 6.18231 6.32030 6.75679 7.04671 7.34965 7.61243 8.91352 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029279 B = 0.004136 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.086738 B = 6768.209098 C = 7432.606252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.001 1.001 5 C -0.549 4.549 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.972 3.028 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.698 5.698 14 C 0.569 3.431 15 O -0.593 6.593 16 C -0.187 4.187 17 C -0.184 4.184 18 C 0.022 3.978 19 C -0.097 4.097 20 C -0.123 4.123 21 C -0.129 4.129 22 C 0.020 3.980 23 N -0.343 5.343 24 C -0.001 4.001 25 H 0.046 0.954 26 H 0.040 0.960 27 H 0.027 0.973 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.265 0.735 31 H 0.401 0.599 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.167 0.833 35 H 0.183 0.817 36 H 0.187 0.813 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.166 9.485 20.257 23.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.017 0.983 5 C -0.588 4.588 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.797 3.203 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.345 5.345 14 C 0.357 3.643 15 O -0.476 6.476 16 C -0.195 4.195 17 C -0.208 4.208 18 C -0.083 4.083 19 C -0.115 4.115 20 C -0.143 4.143 21 C -0.149 4.149 22 C -0.097 4.097 23 N -0.006 5.006 24 C -0.135 4.135 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.236 0.764 32 H 0.179 0.821 33 H 0.179 0.821 34 H 0.184 0.816 35 H 0.200 0.800 36 H 0.204 0.796 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.897 9.475 19.462 23.403 hybrid contribution 1.090 -0.259 -0.601 1.272 sum -7.807 9.216 18.861 22.396 Atomic orbital electron populations 1.21676 0.97066 0.99120 1.00213 1.21783 0.93727 0.99098 1.01303 1.18406 0.93763 0.89188 0.81132 0.98314 1.21574 0.91331 1.39051 1.06801 0.91178 1.25779 1.03442 0.94307 0.94897 1.70052 1.37085 1.38316 1.09856 0.85347 0.78948 0.78871 0.77173 1.19558 1.21144 1.18994 1.46074 1.15161 1.55695 1.17581 1.17883 0.81887 0.77860 0.86621 1.90696 1.52776 1.62221 1.41941 1.19650 0.97006 1.07795 0.95016 1.21370 1.01108 1.06479 0.91825 1.19177 0.86790 1.06172 0.96175 1.20991 1.02071 0.98715 0.89756 1.21442 0.92821 0.98265 1.01788 1.21272 0.99381 1.01008 0.93199 1.22377 0.94772 0.98451 0.94128 1.41485 1.12639 1.36129 1.10390 1.21999 1.00548 1.04852 0.86080 0.93467 0.94092 0.95408 0.90740 0.94163 0.92559 0.76423 0.82140 0.82050 0.81571 0.79955 0.79622 0.79793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.90 8.51 71.98 0.61 -5.29 16 2 C -0.12 -6.22 5.45 30.59 0.17 -6.05 16 3 C 0.28 15.05 2.24 44.24 0.10 15.15 16 4 H 0.00 -0.07 7.58 -2.39 -0.02 -0.08 16 5 C -0.55 -30.16 8.73 25.60 0.22 -29.94 16 6 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.91 -53.40 11.29 21.45 0.24 -53.15 16 9 Si 0.97 42.93 29.54 68.60 2.03 44.96 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 13 N -0.70 -31.76 5.01 -449.29 -2.25 -34.01 16 14 C 0.57 25.55 6.38 86.69 0.55 26.10 16 15 O -0.59 -30.65 14.03 -4.04 -0.06 -30.71 16 16 C -0.19 -6.76 6.12 -20.15 -0.12 -6.89 16 17 C -0.18 -5.54 10.43 22.94 0.24 -5.30 16 18 C 0.02 0.56 6.70 38.90 0.26 0.82 16 19 C -0.10 -1.70 10.11 22.47 0.23 -1.48 16 20 C -0.12 -1.51 10.07 22.33 0.22 -1.28 16 21 C -0.13 -1.45 9.97 22.05 0.22 -1.23 16 22 C 0.02 0.32 10.89 82.97 0.90 1.22 16 23 N -0.34 -8.56 2.92 -345.07 -1.01 -9.57 16 24 C 0.00 -0.03 11.37 84.14 0.96 0.93 16 25 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.04 1.93 5.65 -2.38 -0.01 1.91 16 27 H 0.03 1.41 7.84 -2.39 -0.02 1.39 16 28 H 0.07 4.24 5.95 -2.38 -0.01 4.22 16 29 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 31 H 0.40 15.94 7.51 -92.71 -0.70 15.24 16 32 H 0.16 4.24 7.53 -2.91 -0.02 4.22 16 33 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 34 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 35 H 0.18 0.62 8.06 -2.91 -0.02 0.59 16 36 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.19 5.22 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -73.16 311.07 4.35 -68.80 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.39 Total: 25.59 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 5.01 Total: -11.91 kcal Atomic # 7 Polarization: -93.72 SS G_CDS: -3.02 Total: -96.74 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.06 Total: -30.71 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -73.16 4.35 -68.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097140585.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.196 kcal (2) G-P(sol) polarization free energy of solvation -73.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds