Wall clock time and date at job start Mon Mar 30 2020 01:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46792 * 2 1 4 4 C 1.46502 * 120.00090 * 277.52359 * 3 2 1 5 5 C 1.50696 * 109.46991 * 270.00311 * 4 3 2 6 6 H 1.07995 * 120.00195 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99774 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99889 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00048 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.46858 * 90.00071 * 9 7 5 11 11 H 1.48497 * 109.47004 * 210.00470 * 9 7 5 12 12 H 1.48501 * 109.47120 * 330.00050 * 9 7 5 13 13 C 1.34772 * 119.99919 * 97.52853 * 3 2 1 14 14 O 1.21593 * 120.00322 * 185.83764 * 13 3 2 15 15 C 1.47581 * 120.00059 * 5.83149 * 13 3 2 16 16 C 1.40242 * 119.83155 * 134.08712 * 15 13 3 17 17 C 1.36200 * 120.37293 * 180.22317 * 16 15 13 18 18 C 1.39906 * 119.96631 * 359.81012 * 17 16 15 19 19 C 1.46259 * 133.84224 * 179.97438 * 18 17 16 20 20 C 1.34458 * 107.03355 * 180.02562 * 19 18 17 21 21 N 1.36561 * 109.97845 * 359.97438 * 20 19 18 22 22 H 0.96995 * 125.07250 * 180.02562 * 21 20 19 23 23 C 1.37828 * 109.85986 * 359.97438 * 21 20 19 24 24 C 1.38688 * 133.37356 * 180.02562 * 23 21 20 25 25 H 1.09003 * 109.46792 * 189.75826 * 1 2 3 26 26 H 1.08996 * 109.47269 * 309.76111 * 1 2 3 27 27 H 1.09003 * 109.46983 * 69.75711 * 1 2 3 28 28 H 1.08998 * 109.47052 * 240.00685 * 2 1 3 29 29 H 1.08991 * 109.47033 * 119.99884 * 2 1 3 30 30 H 1.08997 * 109.46912 * 30.00376 * 4 3 2 31 31 H 1.08999 * 109.47098 * 150.00097 * 4 3 2 32 32 H 0.96998 * 119.99474 * 180.02562 * 8 7 5 33 33 H 1.07993 * 119.81481 * 0.02562 * 16 15 13 34 34 H 1.08003 * 120.01747 * 179.83188 * 17 16 15 35 35 H 1.07990 * 126.47994 * 0.02562 * 19 18 17 36 36 H 1.07999 * 125.01360 * 180.02562 * 20 19 18 37 37 H 1.08001 * 120.16406 * 359.94177 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1058 2.1273 -1.2578 5 6 3.4638 1.9136 -1.8751 6 1 4.1893 1.2853 -1.3799 7 6 3.7805 2.5210 -3.0717 8 7 4.9655 2.3341 -3.6107 9 14 2.5258 3.6084 -3.9280 10 1 2.6836 5.0089 -3.4604 11 1 2.7399 3.5495 -5.3963 12 1 1.1566 3.1309 -3.6079 13 6 2.3871 1.9656 1.1571 14 8 2.6910 3.1428 1.1739 15 6 2.4219 1.1767 2.4039 16 6 3.5270 1.2760 3.2616 17 6 3.5727 0.5496 4.4128 18 6 2.5112 -0.2985 4.7466 19 6 2.2450 -1.1937 5.8721 20 6 1.0459 -1.7600 5.6500 21 7 0.5231 -1.3000 4.4753 22 1 -0.3332 -1.5649 4.1047 23 6 1.3933 -0.4023 3.8952 24 6 1.3542 0.3423 2.7258 25 1 -0.3633 -1.0128 0.1742 26 1 -0.3633 0.6573 0.7899 27 1 -0.3633 0.3556 -0.9642 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.3354 1.7749 -1.9436 31 1 1.9591 3.1893 -1.0613 32 1 5.1883 2.7618 -4.4524 33 1 4.3477 1.9298 3.0064 34 1 4.4277 0.6284 5.0679 35 1 2.8897 -1.3671 6.7209 36 1 0.5664 -2.4728 6.3045 37 1 0.5034 0.2698 2.0645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103209809.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:34 Heat of formation + Delta-G solvation = 37.186937 kcal Electronic energy + Delta-G solvation = -20504.669353 eV Core-core repulsion = 17441.005177 eV Total energy + Delta-G solvation = -3063.664176 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.28819 -39.32905 -36.38535 -35.50231 -32.84223 -31.91734 -30.41362 -29.46175 -29.20057 -27.46277 -23.58626 -22.99375 -22.77333 -21.38073 -20.76806 -18.78788 -17.84919 -16.92438 -16.77423 -15.96749 -15.55802 -14.82498 -14.47024 -14.41886 -14.14911 -13.91683 -13.52560 -13.19805 -12.92083 -12.81027 -12.51194 -12.23623 -11.86599 -11.72202 -11.51871 -11.42946 -11.07846 -10.76719 -10.68167 -10.49716 -10.14878 -9.69873 -9.52529 -9.10066 -8.57281 -8.20464 -7.73985 -7.69206 -6.07077 -4.05911 0.98243 1.63078 2.58358 3.00254 3.30483 3.36273 3.38475 3.40271 3.78591 4.11155 4.41118 4.66794 4.74501 4.94974 5.17131 5.24547 5.26997 5.31076 5.41264 5.51954 5.55586 5.67325 5.78011 5.90355 5.91737 6.04317 6.15761 6.39732 6.47400 6.58304 6.65859 6.70543 6.78197 6.97500 7.13221 7.35648 7.40841 7.62395 8.24217 8.48521 8.92407 8.98924 9.53086 11.06271 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032032 B = 0.004706 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.913019 B = 5948.811294 C = 6370.060932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 N -0.584 5.584 4 C 0.215 3.785 5 C -0.530 4.530 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.553 3.447 14 O -0.535 6.535 15 C -0.091 4.091 16 C -0.094 4.094 17 C -0.081 4.081 18 C -0.097 4.097 19 C -0.209 4.209 20 C 0.051 3.949 21 N -0.595 5.595 22 H 0.414 0.586 23 C 0.084 3.916 24 C -0.113 4.113 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.031 0.969 31 H 0.039 0.961 32 H 0.264 0.736 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.145 0.855 36 H 0.169 0.831 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.744 -10.423 16.597 22.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.029 4.029 3 N -0.315 5.315 4 C 0.095 3.905 5 C -0.568 4.568 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.340 3.660 14 O -0.413 6.413 15 C -0.096 4.096 16 C -0.114 4.114 17 C -0.100 4.100 18 C -0.102 4.102 19 C -0.235 4.235 20 C -0.076 4.076 21 N -0.198 5.198 22 H 0.251 0.749 23 C -0.022 4.022 24 C -0.134 4.134 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.163 0.837 36 H 0.186 0.814 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.585 -9.794 16.368 21.814 hybrid contribution -0.909 0.301 -0.743 1.212 sum -11.494 -9.492 15.625 21.595 Atomic orbital electron populations 1.22363 0.97011 1.01325 1.02540 1.21691 0.93265 0.84168 1.03741 1.47850 1.62462 1.13386 1.07783 1.19680 0.97877 0.92724 0.80238 1.21343 0.98359 1.31003 1.06131 0.90652 1.24851 0.95249 0.95952 0.96888 1.69900 1.20351 1.44085 1.19210 0.86855 0.82163 0.81869 0.78843 1.19846 1.21079 1.19084 1.18134 0.77872 0.86897 0.83109 1.90761 1.48832 1.15734 1.85982 1.19801 0.95500 0.97990 0.96271 1.20688 0.97854 0.99392 0.93469 1.20169 0.97330 0.95741 0.96713 1.19346 0.94941 1.00127 0.95804 1.21695 0.98219 1.03014 1.00534 1.21794 0.95827 1.01091 0.88892 1.41717 1.19405 1.38601 1.20099 0.74900 1.18088 0.91845 0.96086 0.96151 1.20696 1.00360 0.96962 0.95334 0.91946 0.92455 0.91786 0.89906 0.90174 0.95130 0.94337 0.92562 0.85045 0.85614 0.83723 0.81419 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.15 37.16 0.34 -1.90 16 2 C 0.10 1.56 5.59 -4.04 -0.02 1.54 16 3 N -0.58 -12.46 2.46 -176.27 -0.43 -12.90 16 4 C 0.22 5.35 4.29 -5.19 -0.02 5.33 16 5 C -0.53 -15.40 9.94 -34.44 -0.34 -15.75 16 6 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 7 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 8 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 9 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 13 C 0.55 12.11 7.24 -12.45 -0.09 12.02 16 14 O -0.54 -13.85 16.54 5.28 0.09 -13.76 16 15 C -0.09 -1.61 5.07 -104.95 -0.53 -2.15 16 16 C -0.09 -1.56 9.61 -39.56 -0.38 -1.94 16 17 C -0.08 -1.12 10.03 -39.69 -0.40 -1.52 16 18 C -0.10 -1.30 6.37 -105.04 -0.67 -1.97 16 19 C -0.21 -2.15 11.08 -37.70 -0.42 -2.57 16 20 C 0.05 0.42 11.81 -16.78 -0.20 0.22 16 21 N -0.60 -5.47 6.07 -10.68 -0.06 -5.54 16 22 H 0.41 2.53 8.96 -40.82 -0.37 2.17 16 23 C 0.08 1.09 7.26 -84.00 -0.61 0.48 16 24 C -0.11 -1.63 7.43 -39.03 -0.29 -1.92 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.72 6.31 -51.93 -0.33 0.39 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.42 8.13 -51.93 -0.42 0.99 16 29 H 0.08 1.21 5.11 -51.93 -0.27 0.94 16 30 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 31 H 0.04 1.02 6.78 -51.93 -0.35 0.67 16 32 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.13 2.22 8.06 -52.49 -0.42 1.79 16 34 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 35 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.14 1.78 3.71 -52.49 -0.19 1.59 16 LS Contribution 308.59 15.07 4.65 4.65 Total: -1.00 -35.73 308.59 -7.81 -43.54 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -4.42 Total: 2.10 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -3.73 Total: -8.07 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.28 Total: -45.50 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.09 Total: -13.76 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.73 -7.81 -43.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209809.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.723 kcal (2) G-P(sol) polarization free energy of solvation -35.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds