Wall clock time and date at job start Mon Mar 30 2020 01:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46628 * 2 1 4 4 C 1.50697 * 109.47247 * 239.99888 * 2 1 3 5 5 H 1.08003 * 120.00005 * 273.02532 * 4 2 1 6 6 C 1.37874 * 119.99915 * 93.02555 * 4 2 1 7 7 N 1.31517 * 119.99689 * 181.09212 * 6 4 2 8 8 Si 1.86793 * 120.00247 * 1.09130 * 6 4 2 9 9 H 1.48508 * 109.46838 * 90.35407 * 8 6 4 10 10 H 1.48501 * 109.47359 * 210.35116 * 8 6 4 11 11 H 1.48497 * 109.47489 * 330.35692 * 8 6 4 12 12 N 1.46495 * 109.47158 * 119.99363 * 2 1 3 13 13 C 1.46504 * 120.00012 * 60.00464 * 12 2 1 14 14 C 1.34775 * 120.00105 * 240.00225 * 12 2 1 15 15 O 1.21588 * 120.00157 * 355.31463 * 14 12 2 16 16 C 1.47581 * 119.99696 * 175.31698 * 14 12 2 17 17 C 1.40236 * 119.83671 * 30.80603 * 16 14 12 18 18 C 1.36197 * 120.37811 * 179.77021 * 17 16 14 19 19 C 1.39916 * 119.96318 * 0.49321 * 18 17 16 20 20 C 1.46255 * 133.84335 * 179.79305 * 19 18 17 21 21 C 1.34455 * 107.03358 * 179.97438 * 20 19 18 22 22 N 1.36555 * 109.97775 * 0.02562 * 21 20 19 23 23 H 0.96998 * 125.07127 * 180.02562 * 22 21 20 24 24 C 1.37830 * 109.86316 * 359.97438 * 22 21 20 25 25 C 1.38680 * 133.37626 * 180.02562 * 24 22 21 26 26 H 1.09002 * 109.47493 * 293.28543 * 1 2 3 27 27 H 1.09009 * 109.46880 * 173.28734 * 1 2 3 28 28 H 1.09001 * 109.47450 * 53.29106 * 1 2 3 29 29 H 0.96999 * 119.99895 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.47470 * 85.25691 * 13 12 2 31 31 H 1.08997 * 109.47343 * 205.26177 * 13 12 2 32 32 H 1.09001 * 109.46670 * 325.25912 * 13 12 2 33 33 H 1.08002 * 119.81042 * 359.97438 * 17 16 14 34 34 H 1.08001 * 120.02145 * 180.25544 * 18 17 16 35 35 H 1.08000 * 126.47910 * 359.97339 * 20 19 18 36 36 H 1.07997 * 125.00898 * 180.02562 * 21 20 19 37 37 H 1.08001 * 120.16497 * 359.94064 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1659 -1.7821 -1.2185 6 6 2.3216 0.0077 -2.3713 7 7 2.7395 -0.6148 -3.4518 8 14 2.1199 1.8647 -2.3823 9 1 3.3941 2.5035 -1.9653 10 1 1.7649 2.3160 -3.7518 11 1 1.0405 2.2510 -1.4384 12 7 2.0184 -0.6904 1.1962 13 6 1.6645 -2.0931 1.4282 14 6 2.7932 -0.0354 2.0833 15 8 3.1573 1.1010 1.8498 16 6 3.1996 -0.6974 3.3381 17 6 3.3740 -2.0885 3.3683 18 6 3.7535 -2.7103 4.5191 19 6 3.9613 -1.9611 5.6824 20 6 4.3571 -2.3006 7.0488 21 6 4.3949 -1.1510 7.7450 22 7 4.0554 -0.1044 6.9363 23 1 4.0128 0.8239 7.2144 24 6 3.7835 -0.5636 5.6655 25 6 3.4015 0.0620 4.4882 26 1 -0.3634 0.4062 0.9440 27 1 -0.3633 -1.0207 -0.1201 28 1 -0.3634 0.6143 -0.8238 29 1 2.9426 -0.1096 -4.2546 30 1 2.3684 -2.7373 0.9013 31 1 1.7060 -2.3064 2.4962 32 1 0.6558 -2.2790 1.0594 33 1 3.2097 -2.6698 2.4730 34 1 3.8901 -3.7815 4.5348 35 1 4.5772 -3.2880 7.4270 36 1 4.6555 -1.0676 8.7898 37 1 3.2614 1.1325 4.4632 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103441965.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:46 Heat of formation + Delta-G solvation = 47.518952 kcal Electronic energy + Delta-G solvation = -20449.256102 eV Core-core repulsion = 17386.039956 eV Total energy + Delta-G solvation = -3063.216146 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.28532 -39.38079 -36.48933 -35.47835 -32.71316 -31.94377 -30.79235 -29.27946 -28.61785 -26.39340 -25.22491 -23.57445 -22.29992 -20.81358 -20.65533 -18.76336 -17.94398 -17.19744 -16.49040 -15.85325 -15.32611 -14.81935 -14.54972 -14.34239 -13.89702 -13.80830 -13.54677 -13.22416 -12.81095 -12.65376 -12.38605 -12.28267 -12.14714 -11.59898 -11.46830 -11.08013 -11.05015 -10.74345 -10.45748 -10.38887 -9.78195 -9.75914 -9.27066 -9.05539 -8.60053 -8.16871 -7.82908 -7.58511 -6.13870 -4.15773 0.95641 1.56910 2.56509 2.98929 3.32585 3.40433 3.43297 3.46545 3.87602 4.10828 4.41122 4.66536 4.79403 4.98038 5.14643 5.25678 5.35338 5.38589 5.55309 5.63263 5.84202 5.88310 6.02755 6.05153 6.24725 6.35216 6.41370 6.45843 6.56634 6.59808 6.64001 6.69190 6.94819 7.08762 7.13221 7.39615 7.49140 7.65991 8.16804 8.51193 8.87415 8.94689 9.48692 10.98223 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034627 B = 0.004544 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.421978 B = 6160.527274 C = 6471.995698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.223 3.777 3 H 0.064 0.936 4 C -0.524 4.524 5 H 0.078 0.922 6 C 0.079 3.921 7 N -0.893 5.893 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.262 1.262 12 N -0.579 5.579 13 C 0.065 3.935 14 C 0.547 3.453 15 O -0.554 6.554 16 C -0.099 4.099 17 C -0.127 4.127 18 C -0.085 4.085 19 C -0.095 4.095 20 C -0.211 4.211 21 C 0.052 3.948 22 N -0.595 5.595 23 H 0.415 0.585 24 C 0.081 3.919 25 C -0.073 4.073 26 H 0.026 0.974 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.266 0.734 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.150 0.850 34 H 0.126 0.874 35 H 0.146 0.854 36 H 0.169 0.831 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.263 -3.376 21.120 21.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.123 3.877 3 H 0.082 0.918 4 C -0.562 4.562 5 H 0.096 0.904 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.701 3.299 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.186 1.186 12 N -0.309 5.309 13 C -0.078 4.078 14 C 0.335 3.665 15 O -0.434 6.434 16 C -0.103 4.103 17 C -0.146 4.146 18 C -0.103 4.103 19 C -0.100 4.100 20 C -0.236 4.236 21 C -0.075 4.075 22 N -0.197 5.197 23 H 0.252 0.748 24 C -0.025 4.025 25 C -0.095 4.095 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.168 0.832 34 H 0.144 0.856 35 H 0.163 0.837 36 H 0.186 0.814 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.479 -2.649 20.808 20.981 hybrid contribution -0.010 1.274 -0.003 1.274 sum 0.469 -1.375 20.805 20.856 Atomic orbital electron populations 1.22257 0.98356 1.01039 0.99111 1.19330 0.90693 0.94947 0.82774 0.91798 1.21117 1.44804 0.96083 0.94176 0.90359 1.24942 0.93699 0.98423 0.95391 1.69888 1.44464 1.36168 1.02439 0.86907 0.79805 0.86148 0.77086 1.19761 1.21314 1.18619 1.48144 1.48465 1.11721 1.22540 1.22325 1.01363 0.83156 1.00925 1.18192 0.79279 0.85852 0.83218 1.90721 1.55889 1.18949 1.77859 1.19756 1.03017 0.93818 0.93735 1.21568 0.99831 0.93685 0.99541 1.20202 0.99686 0.99473 0.90985 1.19370 1.03961 0.92137 0.94489 1.21699 1.11555 0.98089 0.92261 1.21812 1.02517 0.86724 0.96474 1.41745 1.60613 1.09500 1.07884 0.74817 1.18084 1.04527 0.93679 0.86181 1.20002 1.00615 0.99700 0.89141 0.95442 0.92967 0.92550 0.92435 0.92178 0.90314 0.91485 0.83226 0.85600 0.83659 0.81387 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.87 37.16 0.33 -2.84 16 2 C 0.22 5.48 2.18 -69.08 -0.15 5.32 16 3 H 0.06 1.72 4.24 -51.93 -0.22 1.50 16 4 C -0.52 -14.56 8.83 -34.44 -0.30 -14.87 16 5 H 0.08 2.29 7.53 -52.48 -0.40 1.90 16 6 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 7 N -0.89 -27.06 13.96 55.43 0.77 -26.29 16 8 Si 0.87 22.33 26.64 -169.99 -4.53 17.80 16 9 H -0.27 -7.15 7.11 56.52 0.40 -6.75 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.26 -6.41 6.18 56.52 0.35 -6.06 16 12 N -0.58 -12.45 2.75 -176.48 -0.49 -12.94 16 13 C 0.07 1.10 7.94 59.85 0.47 1.58 16 14 C 0.55 11.87 7.43 -12.45 -0.09 11.78 16 15 O -0.55 -14.03 16.05 5.29 0.08 -13.94 16 16 C -0.10 -1.73 5.51 -104.95 -0.58 -2.30 16 17 C -0.13 -1.88 7.36 -39.57 -0.29 -2.17 16 18 C -0.08 -1.10 10.03 -39.69 -0.40 -1.49 16 19 C -0.09 -1.24 6.37 -105.04 -0.67 -1.91 16 20 C -0.21 -2.15 11.08 -37.70 -0.42 -2.57 16 21 C 0.05 0.44 11.81 -16.79 -0.20 0.24 16 22 N -0.59 -5.84 6.07 -10.69 -0.06 -5.91 16 23 H 0.42 2.88 8.96 -40.82 -0.37 2.52 16 24 C 0.08 1.10 7.26 -84.00 -0.61 0.49 16 25 C -0.07 -1.15 9.61 -39.03 -0.37 -1.52 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 1.03 6.99 -51.92 -0.36 0.67 16 28 H 0.06 1.21 7.24 -51.93 -0.38 0.83 16 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.06 1.01 7.31 -51.93 -0.38 0.63 16 31 H 0.08 1.11 4.59 -51.93 -0.24 0.87 16 32 H 0.07 1.08 6.60 -51.93 -0.34 0.74 16 33 H 0.15 2.09 4.63 -52.49 -0.24 1.85 16 34 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.13 1.97 7.92 -52.49 -0.42 1.55 16 LS Contribution 302.24 15.07 4.55 4.55 Total: -1.00 -34.77 302.24 -7.26 -42.04 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -4.22 Total: 2.78 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -3.38 Total: -8.09 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.22 Total: -45.14 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.08 Total: -13.94 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.53 Total: 17.80 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.77 -7.26 -42.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441965.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.554 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds