Wall clock time and date at job start Mon Mar 30 2020 01:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46628 * 2 1 4 4 C 1.50697 * 109.47247 * 239.99888 * 2 1 3 5 5 H 1.08003 * 120.00005 * 273.02532 * 4 2 1 6 6 C 1.37874 * 119.99915 * 93.02555 * 4 2 1 7 7 N 1.31517 * 119.99689 * 181.09212 * 6 4 2 8 8 Si 1.86793 * 120.00247 * 1.09130 * 6 4 2 9 9 H 1.48508 * 109.46838 * 90.35407 * 8 6 4 10 10 H 1.48501 * 109.47359 * 210.35116 * 8 6 4 11 11 H 1.48497 * 109.47489 * 330.35692 * 8 6 4 12 12 N 1.46495 * 109.47158 * 119.99363 * 2 1 3 13 13 C 1.46504 * 120.00012 * 60.00464 * 12 2 1 14 14 C 1.34775 * 120.00105 * 240.00225 * 12 2 1 15 15 O 1.21588 * 120.00157 * 355.31463 * 14 12 2 16 16 C 1.47581 * 119.99696 * 175.31698 * 14 12 2 17 17 C 1.40236 * 119.83671 * 30.80603 * 16 14 12 18 18 C 1.36197 * 120.37811 * 179.77021 * 17 16 14 19 19 C 1.39916 * 119.96318 * 0.49321 * 18 17 16 20 20 C 1.46255 * 133.84335 * 179.79305 * 19 18 17 21 21 C 1.34455 * 107.03358 * 179.97438 * 20 19 18 22 22 N 1.36555 * 109.97775 * 0.02562 * 21 20 19 23 23 H 0.96998 * 125.07127 * 180.02562 * 22 21 20 24 24 C 1.37830 * 109.86316 * 359.97438 * 22 21 20 25 25 C 1.38680 * 133.37626 * 180.02562 * 24 22 21 26 26 H 1.09002 * 109.47493 * 293.28543 * 1 2 3 27 27 H 1.09009 * 109.46880 * 173.28734 * 1 2 3 28 28 H 1.09001 * 109.47450 * 53.29106 * 1 2 3 29 29 H 0.96999 * 119.99895 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.47470 * 85.25691 * 13 12 2 31 31 H 1.08997 * 109.47343 * 205.26177 * 13 12 2 32 32 H 1.09001 * 109.46670 * 325.25912 * 13 12 2 33 33 H 1.08002 * 119.81042 * 359.97438 * 17 16 14 34 34 H 1.08001 * 120.02145 * 180.25544 * 18 17 16 35 35 H 1.08000 * 126.47910 * 359.97339 * 20 19 18 36 36 H 1.07997 * 125.00898 * 180.02562 * 21 20 19 37 37 H 1.08001 * 120.16497 * 359.94064 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1659 -1.7821 -1.2185 6 6 2.3216 0.0077 -2.3713 7 7 2.7395 -0.6148 -3.4518 8 14 2.1199 1.8647 -2.3823 9 1 3.3941 2.5035 -1.9653 10 1 1.7649 2.3160 -3.7518 11 1 1.0405 2.2510 -1.4384 12 7 2.0184 -0.6904 1.1962 13 6 1.6645 -2.0931 1.4282 14 6 2.7932 -0.0354 2.0833 15 8 3.1573 1.1010 1.8498 16 6 3.1996 -0.6974 3.3381 17 6 3.3740 -2.0885 3.3683 18 6 3.7535 -2.7103 4.5191 19 6 3.9613 -1.9611 5.6824 20 6 4.3571 -2.3006 7.0488 21 6 4.3949 -1.1510 7.7450 22 7 4.0554 -0.1044 6.9363 23 1 4.0128 0.8239 7.2144 24 6 3.7835 -0.5636 5.6655 25 6 3.4015 0.0620 4.4882 26 1 -0.3634 0.4062 0.9440 27 1 -0.3633 -1.0207 -0.1201 28 1 -0.3634 0.6143 -0.8238 29 1 2.9426 -0.1096 -4.2546 30 1 2.3684 -2.7373 0.9013 31 1 1.7060 -2.3064 2.4962 32 1 0.6558 -2.2790 1.0594 33 1 3.2097 -2.6698 2.4730 34 1 3.8901 -3.7815 4.5348 35 1 4.5772 -3.2880 7.4270 36 1 4.6555 -1.0676 8.7898 37 1 3.2614 1.1325 4.4632 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103441965.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:46 Heat of formation + Delta-G solvation = 24.022356 kcal Electronic energy + Delta-G solvation = -20450.274991 eV Core-core repulsion = 17386.039956 eV Total energy + Delta-G solvation = -3064.235035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.24188 -40.90404 -37.66866 -37.26351 -34.73243 -32.96627 -32.49687 -30.34719 -29.72921 -27.87135 -27.26604 -24.85153 -23.42043 -22.26357 -21.58148 -20.25670 -19.33100 -18.87483 -17.77565 -17.51959 -16.69390 -16.48242 -16.05338 -15.40318 -15.26268 -14.98815 -14.78601 -14.57910 -14.32143 -14.12575 -14.02693 -13.74512 -13.46548 -13.19839 -13.09062 -12.73596 -12.49108 -12.30893 -12.15965 -11.84645 -11.70246 -11.26811 -10.83719 -10.77313 -10.71280 -9.43045 -9.19664 -8.64604 -8.37367 -6.41325 -0.14929 0.50073 1.25914 1.32716 1.40707 1.66400 2.01939 2.11318 2.27553 2.42128 2.90929 3.04702 3.63518 3.80375 3.98948 4.17259 4.31286 4.36834 4.45687 4.47380 4.62178 4.70135 4.73657 4.78803 4.79860 4.94779 5.02870 5.06185 5.10618 5.31691 5.40350 5.51604 5.53541 5.70136 5.79598 5.80935 6.13735 6.16053 6.62714 6.69188 6.69580 7.20903 7.31844 8.78089 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034627 B = 0.004544 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.421978 B = 6160.527274 C = 6471.995698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.221 3.779 3 H 0.038 0.962 4 C -0.520 4.520 5 H 0.054 0.946 6 C 0.028 3.972 7 N -0.934 5.934 8 Si 0.924 3.076 9 H -0.287 1.287 10 H -0.273 1.273 11 H -0.246 1.246 12 N -0.587 5.587 13 C 0.064 3.936 14 C 0.540 3.460 15 O -0.604 6.604 16 C -0.128 4.128 17 C -0.136 4.136 18 C -0.078 4.078 19 C -0.103 4.103 20 C -0.229 4.229 21 C 0.077 3.923 22 N -0.587 5.587 23 H 0.429 0.571 24 C 0.064 3.936 25 C -0.077 4.077 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.268 0.732 30 H 0.057 0.943 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.171 0.829 36 H 0.217 0.783 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.055 -4.223 24.782 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.119 3.881 3 H 0.056 0.944 4 C -0.558 4.558 5 H 0.072 0.928 6 C -0.171 4.171 7 N -0.574 5.574 8 Si 0.749 3.251 9 H -0.214 1.214 10 H -0.198 1.198 11 H -0.170 1.170 12 N -0.315 5.315 13 C -0.078 4.078 14 C 0.330 3.670 15 O -0.488 6.488 16 C -0.133 4.133 17 C -0.155 4.155 18 C -0.096 4.096 19 C -0.109 4.109 20 C -0.253 4.253 21 C -0.051 4.051 22 N -0.191 5.191 23 H 0.268 0.732 24 C -0.043 4.043 25 C -0.098 4.098 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.129 0.871 32 H 0.093 0.907 33 H 0.170 0.830 34 H 0.174 0.826 35 H 0.188 0.812 36 H 0.234 0.766 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.244 -3.514 24.499 24.751 hybrid contribution 0.149 1.455 -0.893 1.714 sum 0.393 -2.059 23.606 23.699 Atomic orbital electron populations 1.22109 0.95565 1.02123 1.00108 1.19163 0.92742 0.93444 0.82771 0.94382 1.21346 1.43832 0.95181 0.95449 0.92752 1.25621 0.93991 1.02217 0.95296 1.69987 1.46514 1.37686 1.03188 0.86097 0.79423 0.81618 0.77917 1.21392 1.19821 1.17008 1.48109 1.48427 1.13384 1.21620 1.22559 1.01561 0.80479 1.03156 1.18894 0.78262 0.85398 0.84400 1.90668 1.57797 1.21239 1.79144 1.19437 1.06579 0.95023 0.92223 1.21544 1.00888 0.92441 1.00607 1.20501 0.98077 1.00933 0.90126 1.19870 1.03012 0.91993 0.95994 1.22080 1.12408 1.00068 0.90773 1.22642 0.99032 0.85426 0.97973 1.41901 1.59591 1.10882 1.06720 0.73233 1.18067 1.05118 0.94247 0.86909 1.19948 1.00762 0.99249 0.89887 0.93400 0.91555 0.92854 0.92251 0.92480 0.87132 0.90669 0.82964 0.82562 0.81163 0.76619 0.86347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.87 8.87 71.98 0.64 -5.24 16 2 C 0.22 11.01 2.18 44.25 0.10 11.11 16 3 H 0.04 2.10 4.24 -2.39 -0.01 2.09 16 4 C -0.52 -29.67 8.83 25.60 0.23 -29.45 16 5 H 0.05 3.30 7.53 -2.91 -0.02 3.27 16 6 C 0.03 1.67 5.47 84.65 0.46 2.13 16 7 N -0.93 -58.25 13.96 21.45 0.30 -57.95 16 8 Si 0.92 47.12 26.64 68.60 1.83 48.95 16 9 H -0.29 -15.26 7.11 99.48 0.71 -14.55 16 10 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.25 -11.82 6.18 99.48 0.61 -11.21 16 12 N -0.59 -25.68 2.75 -830.51 -2.29 -27.96 16 13 C 0.06 2.13 7.94 127.77 1.01 3.15 16 14 C 0.54 24.23 7.43 86.71 0.64 24.87 16 15 O -0.60 -32.10 16.05 -3.99 -0.06 -32.16 16 16 C -0.13 -4.54 5.51 -20.07 -0.11 -4.65 16 17 C -0.14 -3.90 7.36 22.28 0.16 -3.74 16 18 C -0.08 -1.83 10.03 22.20 0.22 -1.61 16 19 C -0.10 -2.41 6.37 -20.14 -0.13 -2.54 16 20 C -0.23 -3.64 11.08 23.49 0.26 -3.38 16 21 C 0.08 0.90 11.81 83.09 0.98 1.89 16 22 N -0.59 -9.58 6.07 -187.72 -1.14 -10.72 16 23 H 0.43 4.63 8.96 -92.71 -0.83 3.80 16 24 C 0.06 1.60 7.26 38.96 0.28 1.89 16 25 C -0.08 -2.42 9.61 22.63 0.22 -2.21 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 27 H 0.07 2.55 6.99 -2.38 -0.02 2.53 16 28 H 0.05 2.23 7.24 -2.39 -0.02 2.21 16 29 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 30 H 0.06 1.93 7.31 -2.39 -0.02 1.91 16 31 H 0.11 3.01 4.59 -2.39 -0.01 3.00 16 32 H 0.07 2.36 6.60 -2.39 -0.02 2.34 16 33 H 0.15 4.17 4.63 -2.91 -0.01 4.15 16 34 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 35 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.22 0.44 8.06 -2.91 -0.02 0.42 16 37 H 0.12 3.80 7.92 -2.91 -0.02 3.77 16 Total: -1.00 -79.03 302.24 3.80 -75.23 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.19 Total: 12.40 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 4.97 Total: -7.78 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -3.13 Total: -96.63 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.06 Total: -32.16 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.83 Total: 48.95 kcal Total: -79.03 3.80 -75.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441965.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.249 kcal (2) G-P(sol) polarization free energy of solvation -79.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds