Wall clock time and date at job start Mon Mar 30 2020 01:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47324 * 2 1 4 4 H 1.09002 * 109.46856 * 55.00182 * 3 2 1 5 5 C 1.50703 * 109.47200 * 174.99888 * 3 2 1 6 6 H 1.07994 * 119.99945 * 120.00269 * 5 3 2 7 7 C 1.37884 * 120.00021 * 300.00283 * 5 3 2 8 8 N 1.31515 * 119.99817 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99770 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46972 * 90.00399 * 9 7 5 11 11 H 1.48500 * 109.47123 * 209.99699 * 9 7 5 12 12 H 1.48494 * 109.47359 * 330.00121 * 9 7 5 13 13 N 1.46495 * 109.47334 * 295.00397 * 3 2 1 14 14 C 1.34773 * 120.00239 * 84.99800 * 13 3 2 15 15 O 1.21570 * 119.99984 * 359.97438 * 14 13 3 16 16 C 1.47656 * 119.99932 * 179.97438 * 14 13 3 17 17 C 1.40212 * 119.97584 * 0.02562 * 16 14 13 18 18 C 1.36312 * 120.66955 * 180.02562 * 17 16 14 19 19 C 1.39371 * 120.24011 * 359.97438 * 18 17 16 20 20 N 1.37396 * 133.24888 * 179.97438 * 19 18 17 21 21 H 0.97001 * 125.00716 * 0.02562 * 20 19 18 22 22 C 1.36862 * 109.97911 * 180.28605 * 20 19 18 23 23 C 1.34197 * 109.95877 * 359.54921 * 22 20 19 24 24 C 1.40870 * 119.63732 * 359.97438 * 19 18 17 25 25 C 1.39150 * 119.97490 * 179.97438 * 16 14 13 26 26 H 1.09008 * 109.47110 * 59.99659 * 1 2 3 27 27 H 1.09005 * 109.47368 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47120 * 300.00049 * 1 2 3 29 29 H 1.08999 * 109.47120 * 239.99951 * 2 1 3 30 30 H 1.09001 * 109.47458 * 120.00507 * 2 1 3 31 31 H 0.96994 * 119.99728 * 179.97438 * 8 7 5 32 32 H 0.97004 * 119.99639 * 264.99667 * 13 3 2 33 33 H 1.08007 * 119.66029 * 359.97438 * 17 16 14 34 34 H 1.08005 * 119.88074 * 179.97438 * 18 17 16 35 35 H 1.08004 * 125.02017 * 179.69262 * 22 20 19 36 36 H 1.08006 * 126.53973 * 180.16895 * 23 22 20 37 37 H 1.08001 * 120.30108 * 0.02562 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1433 0.8782 1.2280 8 7 3.4061 0.3373 2.1733 9 14 6.0050 0.8798 1.3811 10 1 6.4428 2.1127 2.0838 11 1 6.4391 -0.3112 2.1546 12 1 6.6131 0.8393 0.0270 13 7 1.6524 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3668 15 8 -0.3414 2.6318 -0.4320 16 6 0.0448 3.3251 -2.6283 17 6 0.9407 3.3619 -3.7062 18 6 0.5952 3.9685 -4.8770 19 6 -0.6583 4.5614 -5.0172 20 7 -1.2737 5.2296 -6.0480 21 1 -0.8768 5.3994 -6.9166 22 6 -2.5271 5.6254 -5.6665 23 6 -2.7691 5.2292 -4.4074 24 6 -1.5678 4.5303 -3.9419 25 6 -1.2123 3.9099 -2.7468 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8292 -0.0612 2.9499 32 1 2.2719 2.1232 -1.9977 33 1 1.9146 2.9057 -3.6076 34 1 1.2954 3.9898 -5.6991 35 1 -3.2200 6.1734 -6.2878 36 1 -3.6747 5.3972 -3.8432 37 1 -1.9057 3.8835 -1.9192 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104267773.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:29 Heat of formation + Delta-G solvation = 15.294899 kcal Electronic energy + Delta-G solvation = -20154.269261 eV Core-core repulsion = 17089.655776 eV Total energy + Delta-G solvation = -3064.613486 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.26601 -39.05742 -36.45682 -34.93164 -32.40339 -31.94439 -31.01724 -29.36689 -28.77162 -26.84985 -23.73977 -22.62024 -22.22407 -20.92476 -20.07721 -19.23236 -18.14701 -17.35268 -16.16727 -15.63545 -15.30864 -14.68281 -14.59629 -14.26099 -13.95835 -13.78054 -13.35006 -13.09419 -12.72358 -12.57659 -12.34430 -12.06430 -11.53527 -11.22650 -11.19496 -10.93071 -10.81276 -10.79037 -10.27501 -10.10985 -9.81393 -9.55952 -9.01382 -8.95752 -8.44798 -8.23330 -7.83218 -7.66709 -6.08104 -4.17236 1.13008 1.35564 2.64252 3.00002 3.27268 3.33877 3.35559 3.48329 4.15486 4.34875 4.42358 4.69292 4.75459 5.03523 5.23114 5.26771 5.38222 5.49719 5.58568 5.77315 5.91245 6.11529 6.41747 6.46603 6.54245 6.56829 6.66014 6.68790 6.74743 7.08574 7.13147 7.28018 7.37881 7.44324 7.53548 7.67805 7.80869 7.96652 8.23719 8.75100 8.83693 9.22434 9.50296 10.97293 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031977 B = 0.004109 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.414617 B = 6812.808933 C = 7391.969550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.704 5.704 14 C 0.546 3.454 15 O -0.549 6.549 16 C -0.151 4.151 17 C -0.065 4.065 18 C -0.140 4.140 19 C 0.108 3.892 20 N -0.596 5.596 21 H 0.414 0.586 22 C 0.039 3.961 23 C -0.193 4.193 24 C -0.123 4.123 25 C -0.009 4.009 26 H 0.039 0.961 27 H 0.022 0.978 28 H 0.050 0.950 29 H 0.030 0.970 30 H 0.099 0.901 31 H 0.264 0.736 32 H 0.387 0.613 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.169 0.831 36 H 0.148 0.852 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.914 8.193 -16.768 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.351 5.351 14 C 0.332 3.668 15 O -0.429 6.429 16 C -0.156 4.156 17 C -0.085 4.085 18 C -0.161 4.161 19 C 0.000 4.000 20 N -0.199 5.199 21 H 0.250 0.750 22 C -0.087 4.087 23 C -0.218 4.218 24 C -0.128 4.128 25 C -0.029 4.029 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.149 0.851 34 H 0.140 0.860 35 H 0.186 0.814 36 H 0.165 0.835 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.402 8.080 -15.997 19.794 hybrid contribution 1.491 0.083 -0.753 1.672 sum -6.911 8.163 -16.750 19.874 Atomic orbital electron populations 1.21847 0.98324 0.97994 1.01355 1.21928 0.92668 0.99779 1.02217 1.18793 0.94142 0.89209 0.81032 0.93204 1.21242 0.90764 1.38920 1.06276 0.92120 1.24883 0.98533 0.94842 0.95411 1.69899 1.35070 1.37653 1.09316 0.86466 0.84965 0.77608 0.78154 1.20597 1.21110 1.19879 1.46424 1.14479 1.55755 1.18475 1.18056 0.82852 0.79095 0.86761 1.90728 1.51597 1.60458 1.40137 1.20023 0.95594 1.04439 0.95528 1.20760 0.99023 0.97023 0.91693 1.19623 0.94030 1.03332 0.99135 1.18406 0.94867 0.98135 0.88579 1.41737 1.14161 1.49835 1.14191 0.74968 1.21768 0.87016 1.02835 0.97033 1.21758 0.98704 1.05810 0.95546 1.19169 0.95050 1.04356 0.94187 1.20698 0.94883 0.91897 0.95387 0.94156 0.95921 0.93127 0.95068 0.88315 0.92601 0.78012 0.85118 0.86039 0.81372 0.83475 0.84602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.51 37.16 0.32 -2.86 16 2 C -0.13 -3.15 5.45 -26.74 -0.15 -3.30 16 3 C 0.27 6.91 2.24 -69.09 -0.15 6.75 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.88 11.29 55.43 0.63 -24.25 16 9 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.70 -15.09 4.97 -55.94 -0.28 -15.36 16 14 C 0.55 11.51 6.33 -12.42 -0.08 11.44 16 15 O -0.55 -13.32 13.46 5.30 0.07 -13.25 16 16 C -0.15 -2.60 5.87 -104.97 -0.62 -3.22 16 17 C -0.07 -0.92 9.46 -39.53 -0.37 -1.30 16 18 C -0.14 -1.71 10.00 -39.85 -0.40 -2.10 16 19 C 0.11 1.34 7.27 -83.96 -0.61 0.73 16 20 N -0.60 -5.31 6.05 -10.61 -0.06 -5.38 16 21 H 0.41 2.30 8.96 -40.82 -0.37 1.93 16 22 C 0.04 0.33 11.81 -16.73 -0.20 0.13 16 23 C -0.19 -2.12 11.09 -37.65 -0.42 -2.54 16 24 C -0.12 -1.73 6.36 -105.16 -0.67 -2.39 16 25 C -0.01 -0.15 9.64 -38.86 -0.37 -0.52 16 26 H 0.04 0.91 5.64 -51.92 -0.29 0.62 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 1.23 7.84 -51.93 -0.41 0.83 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.39 7.20 6.54 -40.82 -0.27 6.94 16 33 H 0.13 1.65 6.36 -52.48 -0.33 1.32 16 34 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 35 H 0.17 0.75 8.06 -52.48 -0.42 0.33 16 36 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 37 H 0.14 2.23 7.64 -52.49 -0.40 1.82 16 LS Contribution 307.73 15.07 4.64 4.64 Total: -1.00 -32.18 307.73 -8.57 -40.75 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -4.43 Total: 9.16 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -4.12 Total: -11.99 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.28 Total: -44.99 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.07 Total: -13.25 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.18 -8.57 -40.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104267773.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.050 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds