Wall clock time and date at job start Mon Mar 30 2020 01:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47324 * 2 1 4 4 H 1.09002 * 109.46856 * 55.00182 * 3 2 1 5 5 C 1.50703 * 109.47200 * 174.99888 * 3 2 1 6 6 H 1.07994 * 119.99945 * 120.00269 * 5 3 2 7 7 C 1.37884 * 120.00021 * 300.00283 * 5 3 2 8 8 N 1.31515 * 119.99817 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99770 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46972 * 90.00399 * 9 7 5 11 11 H 1.48500 * 109.47123 * 209.99699 * 9 7 5 12 12 H 1.48494 * 109.47359 * 330.00121 * 9 7 5 13 13 N 1.46495 * 109.47334 * 295.00397 * 3 2 1 14 14 C 1.34773 * 120.00239 * 84.99800 * 13 3 2 15 15 O 1.21570 * 119.99984 * 359.97438 * 14 13 3 16 16 C 1.47656 * 119.99932 * 179.97438 * 14 13 3 17 17 C 1.40212 * 119.97584 * 0.02562 * 16 14 13 18 18 C 1.36312 * 120.66955 * 180.02562 * 17 16 14 19 19 C 1.39371 * 120.24011 * 359.97438 * 18 17 16 20 20 N 1.37396 * 133.24888 * 179.97438 * 19 18 17 21 21 H 0.97001 * 125.00716 * 0.02562 * 20 19 18 22 22 C 1.36862 * 109.97911 * 180.28605 * 20 19 18 23 23 C 1.34197 * 109.95877 * 359.54921 * 22 20 19 24 24 C 1.40870 * 119.63732 * 359.97438 * 19 18 17 25 25 C 1.39150 * 119.97490 * 179.97438 * 16 14 13 26 26 H 1.09008 * 109.47110 * 59.99659 * 1 2 3 27 27 H 1.09005 * 109.47368 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47120 * 300.00049 * 1 2 3 29 29 H 1.08999 * 109.47120 * 239.99951 * 2 1 3 30 30 H 1.09001 * 109.47458 * 120.00507 * 2 1 3 31 31 H 0.96994 * 119.99728 * 179.97438 * 8 7 5 32 32 H 0.97004 * 119.99639 * 264.99667 * 13 3 2 33 33 H 1.08007 * 119.66029 * 359.97438 * 17 16 14 34 34 H 1.08005 * 119.88074 * 179.97438 * 18 17 16 35 35 H 1.08004 * 125.02017 * 179.69262 * 22 20 19 36 36 H 1.08006 * 126.53973 * 180.16895 * 23 22 20 37 37 H 1.08001 * 120.30108 * 0.02562 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1433 0.8782 1.2280 8 7 3.4061 0.3373 2.1733 9 14 6.0050 0.8798 1.3811 10 1 6.4428 2.1127 2.0838 11 1 6.4391 -0.3112 2.1546 12 1 6.6131 0.8393 0.0270 13 7 1.6524 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3668 15 8 -0.3414 2.6318 -0.4320 16 6 0.0448 3.3251 -2.6283 17 6 0.9407 3.3619 -3.7062 18 6 0.5952 3.9685 -4.8770 19 6 -0.6583 4.5614 -5.0172 20 7 -1.2737 5.2296 -6.0480 21 1 -0.8768 5.3994 -6.9166 22 6 -2.5271 5.6254 -5.6665 23 6 -2.7691 5.2292 -4.4074 24 6 -1.5678 4.5303 -3.9419 25 6 -1.2123 3.9099 -2.7468 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8292 -0.0612 2.9499 32 1 2.2719 2.1232 -1.9977 33 1 1.9146 2.9057 -3.6076 34 1 1.2954 3.9898 -5.6991 35 1 -3.2200 6.1734 -6.2878 36 1 -3.6747 5.3972 -3.8432 37 1 -1.9057 3.8835 -1.9192 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104267773.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:28 Heat of formation + Delta-G solvation = -5.759552 kcal Electronic energy + Delta-G solvation = -20155.182251 eV Core-core repulsion = 17089.655776 eV Total energy + Delta-G solvation = -3065.526475 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.18963 -40.67848 -37.66167 -36.80100 -34.31151 -32.97363 -32.85015 -30.59800 -29.73336 -28.75913 -25.37924 -24.26156 -23.27153 -22.01093 -21.55521 -20.98662 -19.24227 -18.82939 -17.59102 -17.32986 -16.73371 -16.32116 -16.22343 -15.40524 -15.23885 -14.92932 -14.73709 -14.56162 -14.02737 -13.92453 -13.62221 -13.51367 -13.34222 -13.13738 -12.86812 -12.68384 -12.44374 -12.14723 -12.04018 -11.85912 -11.57291 -11.04285 -10.77165 -10.72725 -10.50503 -9.66542 -9.18814 -8.69715 -8.14251 -6.31884 0.01182 0.30580 1.46176 1.46863 1.57604 1.83323 2.10292 2.24999 2.37851 2.67267 3.03452 3.15372 3.74481 3.94682 4.03318 4.22159 4.34195 4.45679 4.49868 4.57746 4.72080 4.74310 4.79690 4.98944 5.08068 5.11562 5.25589 5.38104 5.44855 5.49240 5.58012 5.63094 5.65560 5.75816 5.81281 5.96465 6.12459 6.17945 6.73888 6.75719 7.02094 7.34823 7.59713 8.91454 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031977 B = 0.004109 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.414617 B = 6812.808933 C = 7391.969550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.003 1.003 5 C -0.549 4.549 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.972 3.028 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.259 1.259 13 N -0.700 5.700 14 C 0.543 3.457 15 O -0.592 6.592 16 C -0.175 4.175 17 C -0.077 4.077 18 C -0.124 4.124 19 C 0.103 3.897 20 N -0.579 5.579 21 H 0.435 0.565 22 C 0.072 3.928 23 C -0.229 4.229 24 C -0.145 4.145 25 C -0.026 4.026 26 H 0.040 0.960 27 H 0.046 0.954 28 H 0.025 0.975 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.265 0.735 32 H 0.402 0.598 33 H 0.143 0.857 34 H 0.160 0.840 35 H 0.219 0.781 36 H 0.157 0.843 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.264 9.376 -20.711 23.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.015 0.985 5 C -0.587 4.587 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.797 3.203 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.183 1.183 13 N -0.348 5.348 14 C 0.332 3.668 15 O -0.476 6.476 16 C -0.179 4.179 17 C -0.097 4.097 18 C -0.144 4.144 19 C -0.007 4.007 20 N -0.183 5.183 21 H 0.275 0.725 22 C -0.054 4.054 23 C -0.253 4.253 24 C -0.150 4.150 25 C -0.046 4.046 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.238 0.762 33 H 0.161 0.839 34 H 0.178 0.822 35 H 0.235 0.765 36 H 0.175 0.825 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.742 9.283 -20.012 23.379 hybrid contribution 1.141 -0.166 0.355 1.207 sum -6.600 9.116 -19.657 22.651 Atomic orbital electron populations 1.21682 0.97185 0.99106 1.00155 1.21780 0.93596 0.99134 1.01379 1.18402 0.93813 0.89178 0.81200 0.98504 1.21580 0.91255 1.39017 1.06854 0.90942 1.25795 1.03465 0.94302 0.94943 1.70056 1.37131 1.38330 1.09848 0.85344 0.78917 0.77391 0.78670 1.20487 1.20920 1.18281 1.46162 1.15215 1.55819 1.17635 1.18703 0.81973 0.78300 0.87798 1.90691 1.52703 1.62037 1.42126 1.19713 0.97089 1.06444 0.94651 1.20843 0.99023 0.98167 0.91659 1.19943 0.94389 1.01032 0.99033 1.18552 0.94788 0.98200 0.89114 1.41825 1.14064 1.48152 1.14266 0.72500 1.22499 0.86682 1.00042 0.96171 1.22046 0.98630 1.07393 0.97221 1.19468 0.97130 1.04533 0.93839 1.20629 0.94493 0.93247 0.96225 0.94113 0.93451 0.95567 0.93965 0.90788 0.92587 0.76236 0.83927 0.82212 0.76476 0.82534 0.86640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.51 71.98 0.61 -5.34 16 2 C -0.12 -6.17 5.45 30.59 0.17 -6.01 16 3 C 0.28 14.87 2.24 44.25 0.10 14.97 16 4 H 0.00 -0.19 7.58 -2.39 -0.02 -0.21 16 5 C -0.55 -29.75 8.73 25.60 0.22 -29.52 16 6 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 7 C 0.02 0.82 5.29 84.66 0.45 1.27 16 8 N -0.92 -53.32 11.29 21.45 0.24 -53.08 16 9 Si 0.97 42.55 29.54 68.60 2.03 44.57 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 12 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 13 N -0.70 -31.14 4.97 -449.18 -2.23 -33.37 16 14 C 0.54 24.22 6.33 86.73 0.55 24.77 16 15 O -0.59 -31.02 13.46 -3.94 -0.05 -31.07 16 16 C -0.17 -6.21 5.87 -20.09 -0.12 -6.33 16 17 C -0.08 -2.11 9.46 22.30 0.21 -1.90 16 18 C -0.12 -2.63 10.00 22.09 0.22 -2.41 16 19 C 0.10 2.26 7.27 39.19 0.28 2.55 16 20 N -0.58 -7.61 6.05 -187.48 -1.13 -8.75 16 21 H 0.43 2.39 8.96 -92.71 -0.83 1.56 16 22 C 0.07 0.88 11.81 82.99 0.98 1.86 16 23 C -0.23 -4.55 11.09 23.52 0.26 -4.29 16 24 C -0.14 -3.95 6.36 -20.21 -0.13 -4.08 16 25 C -0.03 -0.89 9.64 22.74 0.22 -0.67 16 26 H 0.04 1.92 5.64 -2.38 -0.01 1.91 16 27 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.03 1.34 7.84 -2.39 -0.02 1.32 16 29 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.07 4.20 5.95 -2.39 -0.01 4.19 16 31 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.40 15.13 6.54 -92.71 -0.61 14.52 16 33 H 0.14 3.42 6.36 -2.91 -0.02 3.40 16 34 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 35 H 0.22 0.51 8.06 -2.91 -0.02 0.48 16 36 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.12 4.20 7.64 -2.91 -0.02 4.18 16 Total: -1.00 -74.67 307.73 2.55 -72.12 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -0.32 Total: 24.70 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 4.03 Total: -15.13 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -3.13 Total: -95.19 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.05 Total: -31.07 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -74.67 2.55 -72.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104267773.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.358 kcal (2) G-P(sol) polarization free energy of solvation -74.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds