Wall clock time and date at job start Mon Mar 30 2020 01:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47107 * 2 1 4 4 C 1.50702 * 109.47519 * 119.99568 * 2 1 3 5 5 H 1.08001 * 119.99985 * 94.94124 * 4 2 1 6 6 C 1.37877 * 120.00122 * 274.94858 * 4 2 1 7 7 N 1.31514 * 119.99929 * 174.96250 * 6 4 2 8 8 Si 1.86803 * 119.99816 * 354.96783 * 6 4 2 9 9 H 1.48489 * 109.47213 * 275.01280 * 8 6 4 10 10 H 1.48496 * 109.47165 * 35.01662 * 8 6 4 11 11 H 1.48502 * 109.46637 * 155.01681 * 8 6 4 12 12 N 1.46495 * 109.47357 * 240.00146 * 2 1 3 13 13 C 1.46508 * 119.99456 * 299.99600 * 12 2 1 14 14 C 1.34772 * 120.00604 * 119.99678 * 12 2 1 15 15 O 1.21579 * 119.99993 * 5.73126 * 14 12 2 16 16 C 1.47655 * 120.00012 * 185.72948 * 14 12 2 17 17 C 1.40212 * 119.96990 * 214.78817 * 16 14 12 18 18 C 1.36321 * 120.66209 * 179.70012 * 17 16 14 19 19 C 1.39368 * 120.24167 * 0.59640 * 18 17 16 20 20 N 1.37399 * 133.25059 * 179.70967 * 19 18 17 21 21 H 0.97000 * 125.00682 * 359.97438 * 20 19 18 22 22 C 1.36857 * 109.97963 * 179.97438 * 20 19 18 23 23 C 1.34191 * 109.96072 * 0.02562 * 22 20 19 24 24 C 1.40874 * 119.63904 * 359.68021 * 19 18 17 25 25 C 1.39152 * 119.97464 * 35.06547 * 16 14 12 26 26 H 1.08999 * 109.46627 * 295.01161 * 1 2 3 27 27 H 1.08992 * 109.46838 * 55.01240 * 1 2 3 28 28 H 1.09003 * 109.46705 * 175.01623 * 1 2 3 29 29 H 0.96996 * 120.00035 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46661 * 94.72927 * 13 12 2 31 31 H 1.08996 * 109.46996 * 214.72348 * 13 12 2 32 32 H 1.08993 * 109.47306 * 334.72922 * 13 12 2 33 33 H 1.07991 * 119.66949 * 359.97438 * 17 16 14 34 34 H 1.08008 * 119.87827 * 180.28102 * 18 17 16 35 35 H 1.07999 * 125.02266 * 180.02562 * 22 20 19 36 36 H 1.08002 * 126.54180 * 180.02562 * 23 22 20 37 37 H 1.08000 * 120.30471 * 0.02562 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7103 1.2305 5 1 2.2884 -1.7584 1.1823 6 6 2.1652 -0.0222 2.4179 7 7 2.5083 -0.6625 3.5142 8 14 1.8576 1.8196 2.4693 9 1 3.0960 2.5395 2.0781 10 1 0.7647 2.1655 1.5254 11 1 1.4674 2.2179 3.8457 12 7 2.0184 -0.6905 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0356 -2.0833 15 8 3.1730 1.0937 -1.8414 16 6 3.1808 -0.6897 -3.3491 17 6 4.4423 -0.4411 -3.9083 18 6 4.8171 -1.0421 -5.0731 19 6 3.9422 -1.9046 -5.7311 20 7 4.0340 -2.6329 -6.8926 21 1 4.8058 -2.6486 -7.4799 22 6 2.8761 -3.3327 -7.0985 23 6 2.0106 -3.0896 -6.1022 24 6 2.6697 -2.1580 -5.1825 25 6 2.2916 -1.5476 -3.9891 26 1 -0.3632 0.4345 0.9313 27 1 -0.3633 0.5892 -0.8419 28 1 -0.3633 -1.0238 -0.0893 29 1 2.6020 -0.1783 4.3494 30 1 0.7849 -2.1447 -2.0695 31 1 2.4976 -2.6029 -1.9118 32 1 1.4476 -2.5755 -0.4748 33 1 5.1257 0.2296 -3.4089 34 1 5.7937 -0.8451 -5.4902 35 1 2.6868 -3.9843 -7.9386 36 1 1.0182 -3.5026 -5.9974 37 1 1.3170 -1.7381 -3.5645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107593741.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:38 Heat of formation + Delta-G solvation = 35.112355 kcal Electronic energy + Delta-G solvation = -20472.655878 eV Core-core repulsion = 17408.901742 eV Total energy + Delta-G solvation = -3063.754137 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.29991 -39.27727 -36.45998 -35.38462 -32.81765 -31.97598 -30.64721 -29.05787 -28.74462 -26.29666 -25.17686 -23.51116 -22.42745 -21.06978 -20.41887 -18.51499 -18.12813 -17.14566 -16.33368 -16.06732 -15.53812 -14.74926 -14.51714 -14.19686 -14.15968 -13.52308 -13.41572 -13.19539 -12.66835 -12.54837 -12.32791 -12.26083 -12.13792 -11.82848 -11.35675 -11.32646 -11.05394 -10.71806 -10.61295 -10.35610 -9.81383 -9.73859 -9.27412 -9.04361 -8.55098 -8.21548 -7.78908 -7.61467 -6.11165 -4.12143 1.09711 1.40269 2.63994 2.99942 3.34403 3.38135 3.41889 3.48332 3.85577 4.15838 4.43246 4.64026 4.73432 5.05852 5.08289 5.26554 5.28770 5.40696 5.53632 5.73723 5.82086 5.88409 5.95507 6.13654 6.28286 6.39083 6.42414 6.46412 6.55944 6.62372 6.66356 6.67080 6.97688 7.06277 7.16343 7.37568 7.50396 7.68768 8.20835 8.53614 8.89541 8.98921 9.51328 11.01075 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034514 B = 0.004583 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.080046 B = 6107.641162 C = 6402.335503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.226 3.774 3 H 0.061 0.939 4 C -0.525 4.525 5 H 0.079 0.921 6 C 0.079 3.921 7 N -0.894 5.894 8 Si 0.871 3.129 9 H -0.272 1.272 10 H -0.261 1.261 11 H -0.288 1.288 12 N -0.582 5.582 13 C 0.081 3.919 14 C 0.551 3.449 15 O -0.552 6.552 16 C -0.144 4.144 17 C -0.045 4.045 18 C -0.142 4.142 19 C 0.108 3.892 20 N -0.597 5.597 21 H 0.414 0.586 22 C 0.040 3.960 23 C -0.195 4.195 24 C -0.122 4.122 25 C -0.039 4.039 26 H 0.058 0.942 27 H 0.025 0.975 28 H 0.049 0.951 29 H 0.265 0.735 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.134 0.866 34 H 0.122 0.878 35 H 0.169 0.831 36 H 0.147 0.853 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.322 -6.084 -21.018 21.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.125 3.875 3 H 0.079 0.921 4 C -0.564 4.564 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.531 5.531 8 Si 0.698 3.302 9 H -0.197 1.197 10 H -0.185 1.185 11 H -0.214 1.214 12 N -0.312 5.312 13 C -0.062 4.062 14 C 0.338 3.662 15 O -0.432 6.432 16 C -0.148 4.148 17 C -0.065 4.065 18 C -0.162 4.162 19 C 0.000 4.000 20 N -0.200 5.200 21 H 0.250 0.750 22 C -0.085 4.085 23 C -0.220 4.220 24 C -0.126 4.126 25 C -0.058 4.058 26 H 0.077 0.923 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.152 0.848 34 H 0.140 0.860 35 H 0.186 0.814 36 H 0.165 0.835 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.604 -5.511 -20.740 21.468 hybrid contribution 0.259 0.734 -0.154 0.793 sum 0.863 -4.778 -20.894 21.450 Atomic orbital electron populations 1.22304 0.98371 1.00335 0.99816 1.19262 0.90600 0.94849 0.82778 0.92084 1.21129 1.44857 0.98474 0.91890 0.90336 1.24892 0.93986 0.98206 0.95356 1.69889 1.47383 1.36234 0.99632 0.86976 0.79913 0.86208 0.77110 1.19709 1.18524 1.21393 1.48006 1.48882 1.11607 1.22738 1.21887 0.98938 0.82997 1.02404 1.18221 0.78926 0.85832 0.83182 1.90718 1.55231 1.19327 1.77943 1.19864 0.96154 1.01366 0.97432 1.20601 0.95194 0.96941 0.93767 1.19637 0.99184 1.00335 0.97091 1.18411 0.96417 0.96732 0.88403 1.41740 1.16217 1.40701 1.21315 0.74981 1.21766 0.86252 0.99445 1.01082 1.21731 1.00607 1.03765 0.95859 1.19131 0.94371 1.02160 0.96943 1.21138 0.99503 0.92733 0.92451 0.92274 0.95542 0.93233 0.92469 0.93676 0.92065 0.89850 0.84810 0.86023 0.81405 0.83494 0.84403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.89 37.16 0.33 -2.89 16 2 C 0.23 5.57 2.18 -69.08 -0.15 5.42 16 3 H 0.06 1.65 4.68 -51.92 -0.24 1.41 16 4 C -0.53 -14.68 8.66 -34.44 -0.30 -14.97 16 5 H 0.08 2.32 6.97 -52.49 -0.37 1.96 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -27.15 13.96 55.43 0.77 -26.37 16 8 Si 0.87 22.20 26.19 -169.99 -4.45 17.75 16 9 H -0.27 -7.10 7.11 56.52 0.40 -6.70 16 10 H -0.26 -6.34 6.14 56.52 0.35 -5.99 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 N -0.58 -12.59 2.75 -176.45 -0.49 -13.08 16 13 C 0.08 1.40 7.74 59.85 0.46 1.87 16 14 C 0.55 11.96 7.35 -12.42 -0.09 11.87 16 15 O -0.55 -14.00 16.15 5.30 0.09 -13.91 16 16 C -0.14 -2.51 5.18 -104.97 -0.54 -3.05 16 17 C -0.05 -0.70 9.52 -39.53 -0.38 -1.08 16 18 C -0.14 -1.80 10.00 -39.85 -0.40 -2.19 16 19 C 0.11 1.34 7.27 -83.95 -0.61 0.73 16 20 N -0.60 -5.25 6.05 -10.61 -0.06 -5.31 16 21 H 0.41 2.29 8.96 -40.82 -0.37 1.92 16 22 C 0.04 0.32 11.81 -16.73 -0.20 0.13 16 23 C -0.19 -2.02 11.09 -37.65 -0.42 -2.44 16 24 C -0.12 -1.62 6.36 -105.16 -0.67 -2.29 16 25 C -0.04 -0.59 7.85 -38.86 -0.30 -0.89 16 26 H 0.06 1.30 6.72 -51.93 -0.35 0.95 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.97 7.51 -51.93 -0.39 0.58 16 29 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.04 0.65 6.38 -51.93 -0.33 0.31 16 31 H 0.06 0.98 6.49 -51.93 -0.34 0.64 16 32 H 0.08 1.54 6.70 -51.93 -0.35 1.19 16 33 H 0.13 2.08 7.98 -52.49 -0.42 1.66 16 34 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 35 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.14 1.90 5.22 -52.49 -0.27 1.63 16 LS Contribution 303.07 15.07 4.57 4.57 Total: -1.00 -34.71 303.07 -7.24 -41.95 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.30 Total: 2.01 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -3.36 Total: -7.61 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.22 Total: -44.76 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.91 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.45 Total: 17.75 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.71 -7.24 -41.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107593741.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.064 kcal (2) G-P(sol) polarization free energy of solvation -34.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds