Wall clock time and date at job start Mon Mar 30 2020 01:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47107 * 2 1 4 4 C 1.50702 * 109.47519 * 119.99568 * 2 1 3 5 5 H 1.08001 * 119.99985 * 94.94124 * 4 2 1 6 6 C 1.37877 * 120.00122 * 274.94858 * 4 2 1 7 7 N 1.31514 * 119.99929 * 174.96250 * 6 4 2 8 8 Si 1.86803 * 119.99816 * 354.96783 * 6 4 2 9 9 H 1.48489 * 109.47213 * 275.01280 * 8 6 4 10 10 H 1.48496 * 109.47165 * 35.01662 * 8 6 4 11 11 H 1.48502 * 109.46637 * 155.01681 * 8 6 4 12 12 N 1.46495 * 109.47357 * 240.00146 * 2 1 3 13 13 C 1.46508 * 119.99456 * 299.99600 * 12 2 1 14 14 C 1.34772 * 120.00604 * 119.99678 * 12 2 1 15 15 O 1.21579 * 119.99993 * 5.73126 * 14 12 2 16 16 C 1.47655 * 120.00012 * 185.72948 * 14 12 2 17 17 C 1.40212 * 119.96990 * 214.78817 * 16 14 12 18 18 C 1.36321 * 120.66209 * 179.70012 * 17 16 14 19 19 C 1.39368 * 120.24167 * 0.59640 * 18 17 16 20 20 N 1.37399 * 133.25059 * 179.70967 * 19 18 17 21 21 H 0.97000 * 125.00682 * 359.97438 * 20 19 18 22 22 C 1.36857 * 109.97963 * 179.97438 * 20 19 18 23 23 C 1.34191 * 109.96072 * 0.02562 * 22 20 19 24 24 C 1.40874 * 119.63904 * 359.68021 * 19 18 17 25 25 C 1.39152 * 119.97464 * 35.06547 * 16 14 12 26 26 H 1.08999 * 109.46627 * 295.01161 * 1 2 3 27 27 H 1.08992 * 109.46838 * 55.01240 * 1 2 3 28 28 H 1.09003 * 109.46705 * 175.01623 * 1 2 3 29 29 H 0.96996 * 120.00035 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46661 * 94.72927 * 13 12 2 31 31 H 1.08996 * 109.46996 * 214.72348 * 13 12 2 32 32 H 1.08993 * 109.47306 * 334.72922 * 13 12 2 33 33 H 1.07991 * 119.66949 * 359.97438 * 17 16 14 34 34 H 1.08008 * 119.87827 * 180.28102 * 18 17 16 35 35 H 1.07999 * 125.02266 * 180.02562 * 22 20 19 36 36 H 1.08002 * 126.54180 * 180.02562 * 23 22 20 37 37 H 1.08000 * 120.30471 * 0.02562 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7103 1.2305 5 1 2.2884 -1.7584 1.1823 6 6 2.1652 -0.0222 2.4179 7 7 2.5083 -0.6625 3.5142 8 14 1.8576 1.8196 2.4693 9 1 3.0960 2.5395 2.0781 10 1 0.7647 2.1655 1.5254 11 1 1.4674 2.2179 3.8457 12 7 2.0184 -0.6905 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0356 -2.0833 15 8 3.1730 1.0937 -1.8414 16 6 3.1808 -0.6897 -3.3491 17 6 4.4423 -0.4411 -3.9083 18 6 4.8171 -1.0421 -5.0731 19 6 3.9422 -1.9046 -5.7311 20 7 4.0340 -2.6329 -6.8926 21 1 4.8058 -2.6486 -7.4799 22 6 2.8761 -3.3327 -7.0985 23 6 2.0106 -3.0896 -6.1022 24 6 2.6697 -2.1580 -5.1825 25 6 2.2916 -1.5476 -3.9891 26 1 -0.3632 0.4345 0.9313 27 1 -0.3633 0.5892 -0.8419 28 1 -0.3633 -1.0238 -0.0893 29 1 2.6020 -0.1783 4.3494 30 1 0.7849 -2.1447 -2.0695 31 1 2.4976 -2.6029 -1.9118 32 1 1.4476 -2.5755 -0.4748 33 1 5.1257 0.2296 -3.4089 34 1 5.7937 -0.8451 -5.4902 35 1 2.6868 -3.9843 -7.9386 36 1 1.0182 -3.5026 -5.9974 37 1 1.3170 -1.7381 -3.5645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107593741.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:38 Heat of formation + Delta-G solvation = 11.445225 kcal Electronic energy + Delta-G solvation = -20473.682162 eV Core-core repulsion = 17408.901742 eV Total energy + Delta-G solvation = -3064.780420 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.21462 -40.82822 -37.64544 -37.14371 -34.77358 -33.16178 -32.23619 -30.25910 -29.68402 -27.81147 -27.23772 -24.80468 -23.57757 -22.22637 -21.56501 -20.07458 -19.27719 -18.86839 -17.90967 -17.51782 -16.93153 -16.28440 -16.02613 -15.33941 -15.18801 -15.06774 -14.75706 -14.52221 -14.18258 -14.04697 -13.77516 -13.54429 -13.48697 -13.34620 -13.08015 -12.88104 -12.63275 -12.44096 -12.25148 -11.81074 -11.74168 -11.31704 -10.79903 -10.77311 -10.70073 -9.43943 -9.15924 -8.66387 -8.35624 -6.39094 0.04277 0.32675 1.28431 1.34805 1.42814 1.84358 1.92269 2.24923 2.28900 2.32793 2.93863 3.03532 3.61144 3.79550 3.98081 4.23549 4.32803 4.37970 4.43349 4.48718 4.62732 4.72456 4.74388 4.79499 4.80643 4.95710 5.03412 5.13001 5.13784 5.31685 5.36052 5.51665 5.53379 5.67298 5.79111 5.79696 6.13470 6.19242 6.64159 6.71268 6.74498 7.22556 7.35015 8.79966 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034514 B = 0.004583 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.080046 B = 6107.641162 C = 6402.335503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.225 3.775 3 H 0.035 0.965 4 C -0.523 4.523 5 H 0.051 0.949 6 C 0.028 3.972 7 N -0.936 5.936 8 Si 0.923 3.077 9 H -0.286 1.286 10 H -0.242 1.242 11 H -0.275 1.275 12 N -0.590 5.590 13 C 0.083 3.917 14 C 0.544 3.456 15 O -0.603 6.603 16 C -0.171 4.171 17 C -0.072 4.072 18 C -0.127 4.127 19 C 0.100 3.900 20 N -0.582 5.582 21 H 0.432 0.568 22 C 0.067 3.933 23 C -0.219 4.219 24 C -0.138 4.138 25 C -0.036 4.036 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.268 0.732 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.152 0.848 35 H 0.217 0.783 36 H 0.165 0.835 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.500 -7.490 -24.760 25.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.122 3.878 3 H 0.053 0.947 4 C -0.561 4.561 5 H 0.069 0.931 6 C -0.171 4.171 7 N -0.575 5.575 8 Si 0.748 3.252 9 H -0.212 1.212 10 H -0.166 1.166 11 H -0.200 1.200 12 N -0.320 5.320 13 C -0.059 4.059 14 C 0.334 3.666 15 O -0.487 6.487 16 C -0.176 4.176 17 C -0.092 4.092 18 C -0.147 4.147 19 C -0.010 4.010 20 N -0.186 5.186 21 H 0.272 0.728 22 C -0.059 4.059 23 C -0.243 4.243 24 C -0.143 4.143 25 C -0.055 4.055 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.169 0.831 35 H 0.233 0.767 36 H 0.183 0.817 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.228 -6.959 -24.525 25.494 hybrid contribution 0.577 0.990 0.791 1.393 sum 0.349 -5.969 -23.734 24.475 Atomic orbital electron populations 1.22149 0.95560 1.01925 1.00335 1.19081 0.92650 0.93285 0.82742 0.94716 1.21357 1.43975 0.97458 0.93323 0.93062 1.25588 0.94255 1.02086 0.95172 1.69993 1.49374 1.37860 1.00305 0.86137 0.79691 0.81365 0.77989 1.21238 1.16584 1.20005 1.48023 1.49000 1.13125 1.21805 1.22054 1.00946 0.80546 1.02369 1.18943 0.77804 0.85389 0.84415 1.90663 1.57063 1.21563 1.79365 1.19554 0.97932 1.03731 0.96337 1.20559 0.94801 0.98404 0.95428 1.19802 1.00324 0.99001 0.95618 1.18509 0.96000 0.96856 0.89586 1.41855 1.17282 1.39308 1.20118 0.72784 1.22535 0.84615 0.97667 1.01034 1.22052 1.02158 1.04124 0.96000 1.19490 0.95451 1.02621 0.96780 1.21120 0.99150 0.92126 0.93074 0.92921 0.93522 0.91404 0.92261 0.89979 0.90885 0.91418 0.86265 0.83064 0.76672 0.81738 0.83748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.94 8.89 71.98 0.64 -5.30 16 2 C 0.23 11.28 2.18 44.25 0.10 11.38 16 3 H 0.03 1.93 4.68 -2.38 -0.01 1.92 16 4 C -0.52 -30.15 8.66 25.60 0.22 -29.93 16 5 H 0.05 3.17 6.97 -2.91 -0.02 3.15 16 6 C 0.03 1.67 5.47 84.65 0.46 2.14 16 7 N -0.94 -58.55 13.96 21.45 0.30 -58.25 16 8 Si 0.92 46.86 26.19 68.60 1.80 48.66 16 9 H -0.29 -15.08 7.11 99.48 0.71 -14.38 16 10 H -0.24 -11.47 6.14 99.48 0.61 -10.85 16 11 H -0.27 -13.22 7.11 99.48 0.71 -12.52 16 12 N -0.59 -26.02 2.75 -830.42 -2.29 -28.30 16 13 C 0.08 2.83 7.74 127.77 0.99 3.82 16 14 C 0.54 24.52 7.35 86.73 0.64 25.16 16 15 O -0.60 -32.21 16.15 -3.96 -0.06 -32.28 16 16 C -0.17 -6.08 5.18 -20.09 -0.10 -6.18 16 17 C -0.07 -2.27 9.52 22.30 0.21 -2.06 16 18 C -0.13 -3.01 10.00 22.09 0.22 -2.79 16 19 C 0.10 2.17 7.27 39.19 0.28 2.46 16 20 N -0.58 -7.45 6.05 -187.49 -1.13 -8.58 16 21 H 0.43 2.54 8.96 -92.71 -0.83 1.71 16 22 C 0.07 0.72 11.81 82.99 0.98 1.70 16 23 C -0.22 -3.63 11.09 23.52 0.26 -3.37 16 24 C -0.14 -3.35 6.36 -20.21 -0.13 -3.47 16 25 C -0.04 -1.03 7.85 22.74 0.18 -0.85 16 26 H 0.05 2.26 6.72 -2.39 -0.02 2.24 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 2.56 7.51 -2.39 -0.02 2.55 16 29 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 30 H 0.08 2.19 6.38 -2.39 -0.02 2.18 16 31 H 0.07 2.32 6.49 -2.39 -0.02 2.30 16 32 H 0.07 2.52 6.70 -2.39 -0.02 2.50 16 33 H 0.12 3.98 7.98 -2.92 -0.02 3.96 16 34 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 35 H 0.22 0.26 8.06 -2.91 -0.02 0.23 16 36 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 37 H 0.15 3.75 5.22 -2.91 -0.02 3.74 16 Total: -1.00 -79.80 303.07 3.75 -76.05 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.18 Total: 10.01 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 4.95 Total: -7.31 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -3.12 Total: -95.13 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.06 Total: -32.28 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.80 Total: 48.66 kcal Total: -79.80 3.75 -76.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107593741.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.495 kcal (2) G-P(sol) polarization free energy of solvation -79.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds