Wall clock time and date at job start Mon Mar 30 2020 01:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47060 * 2 1 4 4 H 1.09002 * 109.46535 * 55.00107 * 3 2 1 5 5 C 1.50697 * 109.47323 * 174.99803 * 3 2 1 6 6 H 1.08000 * 120.00064 * 119.99669 * 5 3 2 7 7 C 1.37882 * 120.00090 * 300.00561 * 5 3 2 8 8 N 1.31510 * 120.00026 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99953 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46991 * 59.99910 * 9 7 5 11 11 H 1.48498 * 109.47168 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47256 * 300.00075 * 9 7 5 13 13 N 1.46497 * 109.47240 * 295.00165 * 3 2 1 14 14 C 1.34776 * 120.00078 * 85.00009 * 13 3 2 15 15 O 1.21587 * 119.99850 * 359.97438 * 14 13 3 16 16 C 1.47574 * 120.00110 * 180.02562 * 14 13 3 17 17 C 1.40240 * 119.83277 * 359.95642 * 16 14 13 18 18 C 1.36195 * 120.38272 * 179.97438 * 17 16 14 19 19 C 1.39925 * 119.95693 * 0.04137 * 18 17 16 20 20 C 1.46248 * 133.83706 * 179.97438 * 19 18 17 21 21 C 1.34459 * 107.03041 * 180.02562 * 20 19 18 22 22 N 1.36558 * 109.97940 * 0.02562 * 21 20 19 23 23 H 0.97001 * 125.07122 * 180.02562 * 22 21 20 24 24 C 1.37818 * 109.85524 * 359.97438 * 22 21 20 25 25 C 1.38692 * 133.36716 * 180.02562 * 24 22 21 26 26 H 1.08993 * 109.47242 * 59.99971 * 1 2 3 27 27 H 1.09003 * 109.46732 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47310 * 299.99727 * 1 2 3 29 29 H 1.08999 * 109.47310 * 240.00273 * 2 1 3 30 30 H 1.08998 * 109.47632 * 120.00208 * 2 1 3 31 31 H 0.96998 * 120.00086 * 180.02562 * 8 7 5 32 32 H 0.97003 * 120.00063 * 265.00050 * 13 3 2 33 33 H 1.08006 * 119.81068 * 0.02657 * 17 16 14 34 34 H 1.08001 * 120.02572 * 180.31734 * 18 17 16 35 35 H 1.08005 * 126.48672 * 359.97438 * 20 19 18 36 36 H 1.08009 * 125.01088 * 179.97438 * 21 20 19 37 37 H 1.07995 * 120.16833 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8801 1.3812 10 1 6.5003 2.2800 1.3809 11 1 6.3978 0.2168 2.6504 12 1 6.5967 0.1455 0.2343 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3416 2.6318 -0.4320 16 6 0.0444 3.3238 -2.6280 17 6 0.9429 3.3592 -3.7042 18 6 0.5939 3.9642 -4.8734 19 6 -0.6675 4.5556 -5.0047 20 6 -1.3444 5.2681 -6.0878 21 6 -2.5617 5.6124 -5.6322 22 7 -2.7185 5.1791 -4.3467 23 1 -3.5143 5.3099 -3.8077 24 6 -1.5780 4.5274 -3.9299 25 6 -1.2144 3.9088 -2.7431 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8292 -0.0604 2.9502 32 1 2.2718 2.1232 -1.9978 33 1 1.9171 2.9033 -3.6056 34 1 1.2884 3.9836 -5.7002 35 1 -0.9422 5.4787 -7.0678 36 1 -3.3055 6.1527 -6.1991 37 1 -1.9041 3.8802 -1.9125 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107928765.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:34 Heat of formation + Delta-G solvation = 15.274674 kcal Electronic energy + Delta-G solvation = -20165.905199 eV Core-core repulsion = 17101.290836 eV Total energy + Delta-G solvation = -3064.614363 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.24553 -39.10407 -36.47568 -34.98187 -32.38727 -31.92756 -31.00692 -29.35620 -28.87612 -26.84777 -23.67037 -22.59444 -22.41167 -20.78229 -20.14758 -19.30759 -18.25142 -17.12024 -16.10602 -15.64215 -15.37649 -14.72241 -14.62771 -14.25645 -13.89306 -13.84304 -13.56057 -13.13724 -12.90958 -12.63027 -12.14481 -11.83525 -11.55289 -11.27339 -11.21588 -10.97459 -10.88797 -10.78763 -10.29981 -10.13731 -9.75403 -9.58553 -9.06331 -8.99837 -8.46569 -8.25088 -7.83693 -7.68302 -6.09369 -4.18714 0.94852 1.56421 2.56840 3.00945 3.28017 3.33175 3.34494 3.50604 4.14432 4.29945 4.41584 4.66067 4.79949 5.10918 5.21767 5.28150 5.36098 5.48325 5.57057 5.78472 5.87796 6.06457 6.43488 6.49443 6.50956 6.57044 6.63126 6.69194 6.71125 7.08647 7.11826 7.24537 7.39990 7.40961 7.49247 7.65700 7.77946 7.94051 8.21375 8.71060 8.80948 9.17032 9.48568 10.95989 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032163 B = 0.004116 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.366283 B = 6801.084832 C = 7373.332368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.700 5.700 14 C 0.544 3.456 15 O -0.549 6.549 16 C -0.103 4.103 17 C -0.113 4.113 18 C -0.083 4.083 19 C -0.095 4.095 20 C -0.211 4.211 21 C 0.052 3.948 22 N -0.594 5.594 23 H 0.416 0.584 24 C 0.081 3.919 25 C -0.069 4.069 26 H 0.039 0.961 27 H 0.022 0.978 28 H 0.049 0.951 29 H 0.031 0.969 30 H 0.099 0.901 31 H 0.265 0.735 32 H 0.388 0.612 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.146 0.854 36 H 0.169 0.831 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.113 8.076 -15.215 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.348 5.348 14 C 0.330 3.670 15 O -0.429 6.429 16 C -0.108 4.108 17 C -0.133 4.133 18 C -0.101 4.101 19 C -0.100 4.100 20 C -0.236 4.236 21 C -0.075 4.075 22 N -0.197 5.197 23 H 0.252 0.748 24 C -0.025 4.025 25 C -0.091 4.091 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.222 0.778 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.163 0.837 36 H 0.186 0.814 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.725 7.952 -14.265 19.008 hybrid contribution 0.884 0.066 -0.073 0.890 sum -8.841 8.018 -14.338 18.656 Atomic orbital electron populations 1.21845 0.98378 0.98017 1.01279 1.21935 0.92621 0.99763 1.02301 1.18808 0.94206 0.89207 0.80934 0.93202 1.21203 0.90702 1.39076 1.06338 0.92098 1.24879 0.98581 0.94796 0.95368 1.69884 1.35208 1.37576 1.09315 0.86516 0.84892 0.78314 0.77427 1.20182 1.21167 1.20142 1.46440 1.14380 1.55399 1.18563 1.18047 0.82985 0.79283 0.86731 1.90733 1.51611 1.60419 1.40140 1.19924 0.94374 1.01218 0.95261 1.20849 0.99477 1.00278 0.92664 1.20152 0.94528 0.97804 0.97644 1.19349 0.94628 1.02119 0.93912 1.21697 0.94923 1.07489 0.99534 1.21822 0.98941 1.01610 0.85116 1.41754 1.14964 1.49779 1.13173 0.74755 1.18129 0.87930 1.00498 0.95923 1.20097 0.96522 0.97498 0.94956 0.94212 0.95881 0.93164 0.94988 0.88263 0.92526 0.77807 0.85325 0.85684 0.83669 0.81361 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.14 5.45 -26.73 -0.15 -3.29 16 3 C 0.27 6.88 2.24 -69.08 -0.15 6.72 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 5 C -0.53 -14.19 8.73 -34.44 -0.30 -14.49 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.80 11.29 55.43 0.63 -24.18 16 9 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.70 -14.95 4.97 -55.96 -0.28 -15.23 16 14 C 0.54 11.36 6.33 -12.45 -0.08 11.28 16 15 O -0.55 -13.13 13.44 5.29 0.07 -13.06 16 16 C -0.10 -1.77 5.87 -104.95 -0.62 -2.38 16 17 C -0.11 -1.64 9.46 -39.56 -0.37 -2.01 16 18 C -0.08 -1.07 10.03 -39.68 -0.40 -1.46 16 19 C -0.10 -1.25 6.37 -105.05 -0.67 -1.92 16 20 C -0.21 -2.16 11.08 -37.70 -0.42 -2.58 16 21 C 0.05 0.44 11.81 -16.78 -0.20 0.24 16 22 N -0.59 -5.86 6.07 -10.68 -0.06 -5.92 16 23 H 0.42 2.91 8.96 -40.82 -0.37 2.54 16 24 C 0.08 1.10 7.26 -84.00 -0.61 0.49 16 25 C -0.07 -1.08 9.61 -39.02 -0.37 -1.46 16 26 H 0.04 0.89 5.64 -51.93 -0.29 0.60 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.39 7.24 6.53 -40.82 -0.27 6.97 16 33 H 0.13 1.68 6.36 -52.48 -0.33 1.34 16 34 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 36 H 0.17 0.75 8.06 -52.48 -0.42 0.32 16 37 H 0.13 2.06 7.62 -52.49 -0.40 1.66 16 LS Contribution 307.67 15.07 4.64 4.64 Total: -1.00 -31.84 307.67 -8.57 -40.41 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -4.42 Total: 9.70 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -4.12 Total: -11.98 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.28 Total: -45.33 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.07 Total: -13.06 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.84 -8.57 -40.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107928765.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.686 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds