Wall clock time and date at job start Mon Mar 30 2020 01:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47060 * 2 1 4 4 H 1.09002 * 109.46535 * 55.00107 * 3 2 1 5 5 C 1.50697 * 109.47323 * 174.99803 * 3 2 1 6 6 H 1.08000 * 120.00064 * 119.99669 * 5 3 2 7 7 C 1.37882 * 120.00090 * 300.00561 * 5 3 2 8 8 N 1.31510 * 120.00026 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99953 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46991 * 59.99910 * 9 7 5 11 11 H 1.48498 * 109.47168 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47256 * 300.00075 * 9 7 5 13 13 N 1.46497 * 109.47240 * 295.00165 * 3 2 1 14 14 C 1.34776 * 120.00078 * 85.00009 * 13 3 2 15 15 O 1.21587 * 119.99850 * 359.97438 * 14 13 3 16 16 C 1.47574 * 120.00110 * 180.02562 * 14 13 3 17 17 C 1.40240 * 119.83277 * 359.95642 * 16 14 13 18 18 C 1.36195 * 120.38272 * 179.97438 * 17 16 14 19 19 C 1.39925 * 119.95693 * 0.04137 * 18 17 16 20 20 C 1.46248 * 133.83706 * 179.97438 * 19 18 17 21 21 C 1.34459 * 107.03041 * 180.02562 * 20 19 18 22 22 N 1.36558 * 109.97940 * 0.02562 * 21 20 19 23 23 H 0.97001 * 125.07122 * 180.02562 * 22 21 20 24 24 C 1.37818 * 109.85524 * 359.97438 * 22 21 20 25 25 C 1.38692 * 133.36716 * 180.02562 * 24 22 21 26 26 H 1.08993 * 109.47242 * 59.99971 * 1 2 3 27 27 H 1.09003 * 109.46732 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47310 * 299.99727 * 1 2 3 29 29 H 1.08999 * 109.47310 * 240.00273 * 2 1 3 30 30 H 1.08998 * 109.47632 * 120.00208 * 2 1 3 31 31 H 0.96998 * 120.00086 * 180.02562 * 8 7 5 32 32 H 0.97003 * 120.00063 * 265.00050 * 13 3 2 33 33 H 1.08006 * 119.81068 * 0.02657 * 17 16 14 34 34 H 1.08001 * 120.02572 * 180.31734 * 18 17 16 35 35 H 1.08005 * 126.48672 * 359.97438 * 20 19 18 36 36 H 1.08009 * 125.01088 * 179.97438 * 21 20 19 37 37 H 1.07995 * 120.16833 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8801 1.3812 10 1 6.5003 2.2800 1.3809 11 1 6.3978 0.2168 2.6504 12 1 6.5967 0.1455 0.2343 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3416 2.6318 -0.4320 16 6 0.0444 3.3238 -2.6280 17 6 0.9429 3.3592 -3.7042 18 6 0.5939 3.9642 -4.8734 19 6 -0.6675 4.5556 -5.0047 20 6 -1.3444 5.2681 -6.0878 21 6 -2.5617 5.6124 -5.6322 22 7 -2.7185 5.1791 -4.3467 23 1 -3.5143 5.3099 -3.8077 24 6 -1.5780 4.5274 -3.9299 25 6 -1.2144 3.9088 -2.7431 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8292 -0.0604 2.9502 32 1 2.2718 2.1232 -1.9978 33 1 1.9171 2.9033 -3.6056 34 1 1.2884 3.9836 -5.7002 35 1 -0.9422 5.4787 -7.0678 36 1 -3.3055 6.1527 -6.1991 37 1 -1.9041 3.8802 -1.9125 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107928765.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:34 Heat of formation + Delta-G solvation = -5.218637 kcal Electronic energy + Delta-G solvation = -20166.793856 eV Core-core repulsion = 17101.290836 eV Total energy + Delta-G solvation = -3065.503020 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.18104 -40.70684 -37.67181 -36.83791 -34.31933 -33.02808 -32.75278 -30.47426 -29.95377 -28.72141 -25.33387 -24.16678 -23.50141 -21.87036 -21.55228 -21.04706 -19.49716 -18.54675 -17.44623 -17.29420 -16.87177 -16.35729 -16.26495 -15.42129 -15.26974 -14.92217 -14.72203 -14.58031 -14.26358 -13.90252 -13.84825 -13.51190 -13.16232 -12.90613 -12.76488 -12.64428 -12.48123 -12.18230 -12.06100 -11.96756 -11.58849 -11.06187 -10.76751 -10.72547 -10.51155 -9.67656 -9.23089 -8.66074 -8.14937 -6.32632 -0.16818 0.50782 1.46028 1.48290 1.55923 1.70196 2.15485 2.19329 2.39848 2.70920 3.01984 3.14590 3.76253 3.90845 4.05675 4.21471 4.35449 4.40928 4.48675 4.56511 4.71225 4.72793 4.79007 5.03914 5.05528 5.07517 5.23939 5.39731 5.43757 5.51879 5.56333 5.62134 5.69577 5.80167 5.80517 5.94754 6.13896 6.16699 6.68840 6.74394 6.98290 7.33575 7.55407 8.90492 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032163 B = 0.004116 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.366283 B = 6801.084832 C = 7373.332368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.001 1.001 5 C -0.551 4.551 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.972 3.028 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.263 1.263 13 N -0.698 5.698 14 C 0.542 3.458 15 O -0.590 6.590 16 C -0.133 4.133 17 C -0.119 4.119 18 C -0.079 4.079 19 C -0.103 4.103 20 C -0.230 4.230 21 C 0.077 3.923 22 N -0.587 5.587 23 H 0.429 0.571 24 C 0.062 3.938 25 C -0.074 4.074 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.026 0.974 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.265 0.735 32 H 0.402 0.598 33 H 0.138 0.862 34 H 0.156 0.844 35 H 0.171 0.829 36 H 0.218 0.782 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.093 9.272 -18.542 22.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.016 0.984 5 C -0.589 4.589 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.188 1.188 13 N -0.346 5.346 14 C 0.331 3.669 15 O -0.473 6.473 16 C -0.137 4.137 17 C -0.139 4.139 18 C -0.098 4.098 19 C -0.109 4.109 20 C -0.254 4.254 21 C -0.050 4.050 22 N -0.191 5.191 23 H 0.268 0.732 24 C -0.045 4.045 25 C -0.096 4.096 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.238 0.762 33 H 0.156 0.844 34 H 0.173 0.827 35 H 0.189 0.811 36 H 0.234 0.766 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.717 9.164 -17.629 22.118 hybrid contribution 0.710 -0.184 0.855 1.127 sum -9.007 8.980 -16.774 21.051 Atomic orbital electron populations 1.21680 0.97138 0.99146 1.00154 1.21787 0.93649 0.99097 1.01410 1.18413 0.93815 0.89200 0.81118 0.98360 1.21551 0.91278 1.39174 1.06899 0.90993 1.25779 1.03447 0.94260 0.94908 1.70042 1.37199 1.38255 1.09820 0.85405 0.78916 0.78455 0.77607 1.19690 1.21145 1.18782 1.46186 1.15179 1.55558 1.17705 1.18649 0.82078 0.78443 0.87731 1.90695 1.52629 1.61942 1.42026 1.19594 0.96074 1.03780 0.94296 1.20925 0.99413 1.00944 0.92606 1.20465 0.95130 0.96554 0.97621 1.19861 0.94602 1.01626 0.94788 1.22081 0.95398 1.07851 1.00067 1.22656 0.99220 0.99202 0.83964 1.41911 1.14434 1.48714 1.14014 0.73222 1.18110 0.89760 1.01299 0.95378 1.20034 0.95935 0.97861 0.95727 0.94107 0.93438 0.95493 0.94001 0.90734 0.92554 0.76163 0.84420 0.82666 0.81143 0.76572 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 8.51 71.98 0.61 -5.25 16 2 C -0.12 -6.16 5.45 30.59 0.17 -5.99 16 3 C 0.28 14.80 2.24 44.25 0.10 14.90 16 4 H 0.00 -0.09 7.58 -2.39 -0.02 -0.11 16 5 C -0.55 -29.82 8.73 25.60 0.22 -29.59 16 6 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 7 C 0.02 0.88 5.29 84.66 0.45 1.33 16 8 N -0.92 -53.06 11.29 21.45 0.24 -52.82 16 9 Si 0.97 42.50 29.54 68.60 2.03 44.53 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 11 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 13 N -0.70 -30.93 4.97 -449.24 -2.23 -33.16 16 14 C 0.54 23.82 6.33 86.71 0.55 24.37 16 15 O -0.59 -30.14 13.44 -3.99 -0.05 -30.19 16 16 C -0.13 -4.68 5.87 -20.08 -0.12 -4.80 16 17 C -0.12 -3.40 9.46 22.28 0.21 -3.18 16 18 C -0.08 -1.89 10.03 22.20 0.22 -1.66 16 19 C -0.10 -2.46 6.37 -20.14 -0.13 -2.59 16 20 C -0.23 -3.75 11.08 23.49 0.26 -3.49 16 21 C 0.08 0.94 11.81 83.09 0.98 1.92 16 22 N -0.59 -9.92 6.07 -187.71 -1.14 -11.05 16 23 H 0.43 4.91 8.96 -92.71 -0.83 4.08 16 24 C 0.06 1.59 7.26 38.96 0.28 1.87 16 25 C -0.07 -2.37 9.61 22.63 0.22 -2.15 16 26 H 0.04 1.89 5.64 -2.39 -0.01 1.88 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.03 1.35 7.84 -2.39 -0.02 1.34 16 29 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 4.20 5.95 -2.39 -0.01 4.19 16 31 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 32 H 0.40 15.26 6.53 -92.71 -0.61 14.66 16 33 H 0.14 3.51 6.36 -2.91 -0.02 3.49 16 34 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.22 0.52 8.06 -2.91 -0.02 0.49 16 37 H 0.12 3.99 7.62 -2.91 -0.02 3.97 16 Total: -1.00 -72.57 307.67 2.55 -70.02 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -0.32 Total: 26.99 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 4.03 Total: -14.32 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -3.13 Total: -97.04 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.05 Total: -30.19 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -72.57 2.55 -70.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107928765.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.804 kcal (2) G-P(sol) polarization free energy of solvation -72.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds