Wall clock time and date at job start Mon Mar 30 2020 01:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47162 * 2 1 4 4 C 1.46508 * 119.99796 * 270.00356 * 3 2 1 5 5 C 1.50696 * 109.46734 * 269.99533 * 4 3 2 6 6 H 1.07998 * 120.00567 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99881 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99864 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99999 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47565 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47305 * 120.00071 * 9 7 5 12 12 H 1.48498 * 109.47341 * 239.99912 * 9 7 5 13 13 C 1.34770 * 120.00169 * 89.99554 * 3 2 1 14 14 O 1.21281 * 120.00348 * 179.97438 * 13 3 2 15 15 C 1.50706 * 120.00011 * 0.02562 * 13 3 2 16 16 C 1.50696 * 109.46972 * 179.97438 * 15 13 3 17 17 C 1.38365 * 119.84509 * 90.00171 * 16 15 13 18 18 C 1.37947 * 120.14940 * 179.97438 * 17 16 15 19 19 C 1.39629 * 119.84839 * 359.97438 * 18 17 16 20 20 C 1.43205 * 120.15217 * 180.02562 * 19 18 17 21 21 N 9.63965 * 101.63601 * 54.37482 * 2 1 3 22 22 C 1.39630 * 119.69955 * 0.27680 * 19 18 17 23 23 C 1.37951 * 119.84578 * 359.46927 * 22 19 18 24 24 H 1.08992 * 109.47468 * 60.00199 * 1 2 3 25 25 H 1.09006 * 109.46829 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47094 * 299.99580 * 1 2 3 27 27 H 1.08998 * 109.47007 * 239.99890 * 2 1 3 28 28 H 1.09000 * 109.47185 * 119.99970 * 2 1 3 29 29 H 1.08997 * 109.46996 * 29.99660 * 4 3 2 30 30 H 1.09003 * 109.46806 * 149.99753 * 4 3 2 31 31 H 0.96996 * 120.00160 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.46802 * 59.99772 * 15 13 3 33 33 H 1.08992 * 109.46939 * 299.99519 * 15 13 3 34 34 H 1.07992 * 119.92688 * 0.02562 * 17 16 15 35 35 H 1.08003 * 120.07687 * 179.97438 * 18 17 16 36 36 H 1.07999 * 120.08232 * 179.69881 * 22 19 18 37 37 H 1.08002 * 119.92809 * 180.23515 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1493 2.3905 -2.8775 8 7 3.3495 3.1274 -3.6172 9 14 5.9132 2.0965 -3.4171 10 1 6.6004 1.2395 -2.4177 11 1 5.9203 1.4183 -4.7383 12 1 6.6214 3.3973 -3.5247 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1599 1.1672 15 6 1.9921 1.3060 2.4723 16 6 2.3190 2.2292 3.6177 17 6 1.3368 3.0511 4.1415 18 6 1.6290 3.8982 5.1903 19 6 2.9191 3.9247 5.7236 20 6 3.2295 4.8012 6.8127 21 7 3.4742 5.4995 7.6745 22 6 3.9068 3.0964 5.1867 23 6 3.5995 2.2503 4.1413 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5816 1.6877 -2.0284 30 1 2.0954 3.1411 -1.1384 31 1 3.6755 3.5178 -4.4431 32 1 2.6227 0.4188 2.5299 33 1 0.9443 1.0116 2.5302 34 1 0.3391 3.0287 3.7289 35 1 0.8615 4.5395 5.5980 36 1 4.9080 3.1154 5.5912 37 1 4.3615 1.6064 3.7275 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110512991.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:53 Heat of formation + Delta-G solvation = -7.984783 kcal Electronic energy + Delta-G solvation = -19814.036915 eV Core-core repulsion = 16748.413946 eV Total energy + Delta-G solvation = -3065.622969 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.04765 -39.92314 -37.58503 -36.82658 -34.92508 -33.83577 -31.97920 -31.52730 -29.93619 -28.27627 -25.10631 -24.21151 -23.67875 -23.11973 -19.87014 -19.81571 -18.57880 -17.82130 -17.29787 -16.76177 -16.49521 -15.91309 -15.62499 -15.43398 -15.06968 -14.63172 -14.48729 -14.40959 -14.32337 -13.96998 -13.90442 -13.55044 -13.21749 -13.07459 -13.06749 -12.76474 -12.64550 -12.53290 -12.25307 -12.11166 -11.93597 -11.73295 -11.63345 -10.62056 -10.57978 -9.89188 -9.66219 -9.34907 -8.19140 -6.33486 -0.19958 0.48367 1.38291 1.40710 1.52019 1.58436 1.88384 1.95825 2.36884 2.53831 2.86301 2.97657 3.10758 3.74941 3.91188 3.97273 4.02300 4.25554 4.38467 4.44709 4.53040 4.67861 4.69201 4.77507 4.87106 5.04151 5.08465 5.11624 5.13777 5.26496 5.31220 5.36774 5.49059 5.63022 5.64559 5.91550 5.93015 6.11337 6.41308 6.75727 6.90790 7.33280 7.59551 8.87748 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.004406 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.521659 B = 6353.119999 C = 7280.465869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.098 3.902 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.538 4.538 6 H 0.056 0.944 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.965 3.035 10 H -0.264 1.264 11 H -0.271 1.271 12 H -0.285 1.285 13 C 0.498 3.502 14 O -0.592 6.592 15 C -0.097 4.097 16 C -0.038 4.038 17 C -0.114 4.114 18 C -0.066 4.066 19 C -0.051 4.051 20 C 0.283 3.717 21 N -0.468 5.468 22 C -0.067 4.067 23 C -0.117 4.117 24 H 0.033 0.967 25 H 0.093 0.907 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.018 0.982 30 H -0.005 1.005 31 H 0.265 0.735 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.766 -9.807 14.679 18.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.024 4.024 3 N -0.336 5.336 4 C 0.141 3.859 5 C -0.577 4.577 6 H 0.074 0.926 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.790 3.210 10 H -0.188 1.188 11 H -0.197 1.197 12 H -0.211 1.211 13 C 0.288 3.712 14 O -0.473 6.473 15 C -0.136 4.136 16 C -0.039 4.039 17 C -0.132 4.132 18 C -0.086 4.086 19 C -0.055 4.055 20 C -0.031 4.031 21 N -0.145 5.145 22 C -0.088 4.088 23 C -0.135 4.135 24 H 0.052 0.948 25 H 0.112 0.888 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.126 0.874 29 H 0.036 0.964 30 H 0.013 0.987 31 H 0.074 0.926 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.165 0.835 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.198 -8.057 15.838 18.514 hybrid contribution 0.820 0.223 -1.275 1.533 sum -4.377 -7.834 14.563 17.106 Atomic orbital electron populations 1.22170 0.94692 1.03443 1.01776 1.21777 0.95229 0.81293 1.04112 1.48288 1.64010 1.15143 1.06138 1.18653 0.95059 0.91481 0.80710 1.21778 0.97991 1.31565 1.06332 0.92574 1.25853 1.02208 0.94625 0.96619 1.70060 1.37677 1.34433 1.14863 0.85401 0.79281 0.77899 0.78428 1.18777 1.19668 1.21106 1.21206 0.77253 0.86533 0.86256 1.90679 1.47819 1.20742 1.88073 1.20891 1.06880 0.98446 0.87353 1.19855 0.94163 0.95801 0.94101 1.21181 1.00610 0.95418 0.96015 1.21319 0.94713 0.97485 0.95108 1.16069 0.96232 0.98441 0.94728 1.25903 0.92339 0.92384 0.92450 1.81245 1.09176 1.11401 1.12629 1.21295 0.98956 0.93360 0.95155 1.21175 0.96376 0.99841 0.96137 0.94785 0.88800 0.91468 0.91462 0.87389 0.96364 0.98712 0.92571 0.85210 0.84739 0.83443 0.83200 0.83506 0.84048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 10.24 71.98 0.74 -2.66 16 2 C 0.10 2.57 5.93 86.38 0.51 3.09 16 3 N -0.60 -23.32 2.46 -826.15 -2.03 -25.35 16 4 C 0.26 13.68 5.16 85.63 0.44 14.12 16 5 C -0.54 -30.16 9.39 25.60 0.24 -29.92 16 6 H 0.06 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.32 5.46 84.66 0.46 0.78 16 8 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 9 Si 0.97 44.22 29.54 68.60 2.03 46.25 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 13 C 0.50 18.25 7.67 87.66 0.67 18.93 16 14 O -0.59 -28.45 15.61 -3.03 -0.05 -28.50 16 15 C -0.10 -2.06 4.38 29.10 0.13 -1.93 16 16 C -0.04 -0.84 4.38 -19.81 -0.09 -0.93 16 17 C -0.11 -2.28 9.68 22.23 0.22 -2.07 16 18 C -0.07 -1.25 9.76 22.54 0.22 -1.03 16 19 C -0.05 -1.07 5.73 -21.36 -0.12 -1.19 16 20 C 0.28 6.74 15.33 88.33 1.35 8.10 16 21 N -0.47 -13.18 18.54 19.00 0.35 -12.83 16 22 C -0.07 -1.34 9.76 22.54 0.22 -1.12 16 23 C -0.12 -2.50 9.68 22.23 0.22 -2.29 16 24 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.07 1.19 7.22 -2.39 -0.02 1.18 16 27 H 0.07 1.97 8.07 -2.39 -0.02 1.95 16 28 H 0.11 1.93 6.44 -2.39 -0.02 1.91 16 29 H 0.02 0.98 8.07 -2.39 -0.02 0.96 16 30 H -0.01 -0.32 7.42 -2.39 -0.02 -0.34 16 31 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 32 H 0.13 2.05 7.34 -2.39 -0.02 2.03 16 33 H 0.13 1.95 7.13 -2.39 -0.02 1.94 16 34 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 35 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 36 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 37 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -76.80 329.61 6.87 -69.93 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 1.07 Total: 4.22 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 5.21 Total: 1.86 kcal Atomic # 7 Polarization: -92.36 SS G_CDS: -1.39 Total: -93.75 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.05 Total: -28.50 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -76.80 6.87 -69.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110512991.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.946 kcal (2) G-P(sol) polarization free energy of solvation -76.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds