Wall clock time and date at job start Mon Mar 30 2020 01:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.50693 * 109.47070 * 180.02562 * 16 14 12 18 18 C 1.38365 * 119.84984 * 269.72721 * 17 16 14 19 19 C 1.37948 * 120.15390 * 179.76931 * 18 17 16 20 20 C 1.39641 * 119.84295 * 0.52743 * 19 18 17 21 21 C 1.43193 * 120.14892 * 179.70529 * 20 19 18 22 22 N 9.65524 * 125.22155 * 296.77825 * 2 1 3 23 23 C 1.39635 * 119.69840 * 359.72976 * 20 19 18 24 24 C 1.37948 * 119.84589 * 359.97438 * 23 20 19 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 30 30 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 31 31 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 32 32 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 33 33 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 34 34 H 1.07995 * 119.92249 * 359.97438 * 18 17 16 35 35 H 1.07996 * 120.07884 * 180.25681 * 19 18 17 36 36 H 1.07998 * 120.07605 * 179.97438 * 23 20 19 37 37 H 1.07998 * 119.92143 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1335 0.2013 -4.1336 18 6 3.5375 0.9764 -5.1126 19 6 4.2974 1.8490 -5.8637 20 6 5.6730 1.9408 -5.6415 21 6 6.4691 2.8398 -6.4216 22 7 7.0986 3.5537 -7.0417 23 6 6.2687 1.1517 -4.6555 24 6 5.4958 0.2878 -3.9076 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.7089 1.1611 3.4845 29 1 0.7376 -2.1442 -1.9996 30 1 2.4629 -2.5817 -1.9866 31 1 1.5295 -2.5968 -0.4711 32 1 3.9016 -1.6021 -3.0168 33 1 2.4483 -1.0887 -3.9070 34 1 2.4744 0.9005 -5.2869 35 1 3.8303 2.4564 -6.6247 36 1 7.3321 1.2175 -4.4788 37 1 5.9552 -0.3228 -3.1444 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110513398.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:05 Heat of formation + Delta-G solvation = 16.376307 kcal Electronic energy + Delta-G solvation = -19839.598715 eV Core-core repulsion = 16775.032122 eV Total energy + Delta-G solvation = -3064.566593 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.93005 -38.72931 -36.56632 -35.35344 -33.18479 -32.60798 -31.16932 -29.75540 -27.76792 -26.09489 -25.24852 -23.07256 -22.86480 -20.91095 -18.99984 -18.35678 -16.67116 -16.36666 -15.85764 -15.63254 -15.10433 -14.61752 -14.54215 -14.21000 -14.03661 -13.61120 -13.06862 -13.01482 -12.93191 -12.59229 -12.48059 -12.12364 -11.86588 -11.70874 -11.53722 -11.38472 -11.12595 -11.07338 -10.84327 -10.70924 -10.29448 -10.20074 -9.26642 -9.11551 -9.08484 -8.68322 -8.45509 -7.63486 -6.10524 -4.18826 0.68715 1.29148 2.55121 2.84165 3.23596 3.29786 3.32162 3.35352 3.70030 3.80822 4.03856 4.37220 4.68542 4.71114 4.78072 5.18337 5.22399 5.23662 5.25351 5.50774 5.51906 5.64190 5.78117 5.90053 5.98485 6.11798 6.19278 6.32294 6.48824 6.71023 6.74129 6.80093 7.03168 7.36482 7.37836 7.50233 7.68286 7.98173 8.16620 8.48450 8.79510 9.00766 9.47866 10.94753 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028619 B = 0.003784 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.133683 B = 7397.889104 C = 7661.603518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.593 5.593 13 C 0.082 3.918 14 C 0.505 3.495 15 O -0.545 6.545 16 C -0.112 4.112 17 C -0.021 4.021 18 C -0.108 4.108 19 C -0.068 4.068 20 C -0.043 4.043 21 C 0.262 3.738 22 N -0.431 5.431 23 C -0.067 4.067 24 C -0.107 4.107 25 H 0.010 0.990 26 H 0.029 0.971 27 H 0.093 0.907 28 H 0.263 0.737 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.370 -6.189 -13.441 15.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.325 5.325 13 C -0.062 4.062 14 C 0.291 3.709 15 O -0.423 6.423 16 C -0.152 4.152 17 C -0.022 4.022 18 C -0.126 4.126 19 C -0.088 4.088 20 C -0.046 4.046 21 C -0.053 4.053 22 N -0.106 5.106 23 C -0.087 4.087 24 C -0.125 4.125 25 H 0.030 0.970 26 H 0.048 0.952 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.401 -4.342 -14.127 15.421 hybrid contribution -0.055 -0.846 1.238 1.501 sum 4.346 -5.189 -12.889 14.558 Atomic orbital electron populations 1.22085 0.98227 0.99370 1.00791 1.18933 0.90830 0.94539 0.79885 0.91898 1.21314 1.31920 1.13033 0.90317 0.92236 1.24900 0.94944 0.94949 0.98991 1.69879 1.36308 1.22519 1.23798 0.86499 0.79175 0.79304 0.82432 1.20622 1.19915 1.21100 1.48254 1.49012 1.11647 1.23556 1.21626 0.98805 0.83316 1.02481 1.20155 0.79561 0.87212 0.84006 1.90691 1.58038 1.16952 1.76616 1.20879 1.00400 0.98234 0.95664 1.19687 0.93669 0.95181 0.93666 1.20937 1.00095 0.95890 0.95705 1.21078 0.91485 0.97383 0.98859 1.15963 0.92116 0.98144 0.98418 1.25788 0.93243 0.93093 0.93128 1.81230 1.09120 1.10240 1.10021 1.21091 1.00143 0.94102 0.93405 1.20964 0.93253 0.99172 0.99100 0.97045 0.95177 0.88876 0.92652 0.93826 0.92736 0.90063 0.87998 0.88143 0.85051 0.85163 0.85131 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.97 37.16 0.33 -3.04 16 2 C 0.26 6.32 2.64 -69.09 -0.18 6.14 16 3 H 0.06 1.81 6.90 -51.93 -0.36 1.45 16 4 C -0.53 -13.74 7.99 -34.44 -0.28 -14.01 16 5 H 0.06 1.51 7.33 -52.49 -0.38 1.13 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 8 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.59 -11.65 2.75 -175.26 -0.48 -12.14 16 13 C 0.08 1.21 9.24 59.85 0.55 1.77 16 14 C 0.50 9.36 7.67 -10.99 -0.08 9.27 16 15 O -0.54 -12.51 15.36 5.56 0.09 -12.42 16 16 C -0.11 -1.36 4.38 -29.04 -0.13 -1.49 16 17 C -0.02 -0.25 4.38 -104.53 -0.46 -0.71 16 18 C -0.11 -1.19 9.68 -39.64 -0.38 -1.57 16 19 C -0.07 -0.70 9.76 -39.16 -0.38 -1.08 16 20 C -0.04 -0.47 5.73 -106.93 -0.61 -1.09 16 21 C 0.26 3.20 15.33 -22.48 -0.34 2.85 16 22 N -0.43 -6.09 18.54 41.84 0.78 -5.31 16 23 C -0.07 -0.70 9.76 -39.17 -0.38 -1.09 16 24 C -0.11 -1.21 9.68 -39.64 -0.38 -1.59 16 25 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 27 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.61 6.44 -51.92 -0.33 0.28 16 31 H 0.08 1.33 7.02 -51.93 -0.36 0.96 16 32 H 0.10 1.02 7.34 -51.93 -0.38 0.64 16 33 H 0.10 0.97 8.05 -51.93 -0.42 0.55 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 322.96 15.07 4.87 4.87 Total: -1.00 -31.79 322.96 -6.60 -38.39 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -4.63 Total: -0.85 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -2.82 Total: -4.00 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.92 Total: -41.45 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.42 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.79 -6.60 -38.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110513398.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.763 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds