Wall clock time and date at job start Mon Mar 30 2020 01:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.50693 * 109.47070 * 180.02562 * 16 14 12 18 18 C 1.38365 * 119.84984 * 269.72721 * 17 16 14 19 19 C 1.37948 * 120.15390 * 179.76931 * 18 17 16 20 20 C 1.39641 * 119.84295 * 0.52743 * 19 18 17 21 21 C 1.43193 * 120.14892 * 179.70529 * 20 19 18 22 22 N 9.65524 * 125.22155 * 296.77825 * 2 1 3 23 23 C 1.39635 * 119.69840 * 359.72976 * 20 19 18 24 24 C 1.37948 * 119.84589 * 359.97438 * 23 20 19 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 30 30 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 31 31 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 32 32 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 33 33 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 34 34 H 1.07995 * 119.92249 * 359.97438 * 18 17 16 35 35 H 1.07996 * 120.07884 * 180.25681 * 19 18 17 36 36 H 1.07998 * 120.07605 * 179.97438 * 23 20 19 37 37 H 1.07998 * 119.92143 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1335 0.2013 -4.1336 18 6 3.5375 0.9764 -5.1126 19 6 4.2974 1.8490 -5.8637 20 6 5.6730 1.9408 -5.6415 21 6 6.4691 2.8398 -6.4216 22 7 7.0986 3.5537 -7.0417 23 6 6.2687 1.1517 -4.6555 24 6 5.4958 0.2878 -3.9076 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.7089 1.1611 3.4845 29 1 0.7376 -2.1442 -1.9996 30 1 2.4629 -2.5817 -1.9866 31 1 1.5295 -2.5968 -0.4711 32 1 3.9016 -1.6021 -3.0168 33 1 2.4483 -1.0887 -3.9070 34 1 2.4744 0.9005 -5.2869 35 1 3.8303 2.4564 -6.6247 36 1 7.3321 1.2175 -4.4788 37 1 5.9552 -0.3228 -3.1444 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110513398.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:05 Heat of formation + Delta-G solvation = -1.830733 kcal Electronic energy + Delta-G solvation = -19840.388231 eV Core-core repulsion = 16775.032122 eV Total energy + Delta-G solvation = -3065.356109 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.03718 -39.94049 -37.61119 -36.98294 -34.80381 -33.84288 -31.97726 -31.44484 -28.87861 -27.41262 -27.25087 -24.21355 -23.67968 -22.45801 -19.86940 -19.82515 -18.46339 -17.82379 -17.08551 -16.81277 -16.49759 -15.84883 -15.76809 -15.44780 -15.06063 -14.66519 -14.38723 -14.21700 -14.05341 -13.92580 -13.76474 -13.47211 -13.10700 -13.02519 -12.92361 -12.74201 -12.62015 -12.56113 -12.29955 -12.13869 -12.09023 -11.90480 -11.13374 -10.64645 -10.43876 -9.89135 -9.65742 -9.22374 -8.11175 -6.27396 -0.19789 0.48460 1.43515 1.45354 1.54723 1.58533 1.88823 1.94108 2.39085 2.59038 2.86878 2.98812 3.17097 3.75769 3.91783 4.01789 4.04476 4.39875 4.44154 4.58381 4.70741 4.72311 4.81968 4.87109 4.89999 4.95723 5.11443 5.13435 5.16493 5.28585 5.36950 5.53472 5.64270 5.67041 5.73277 5.92207 6.10318 6.21964 6.41474 6.82202 6.95317 7.38484 7.59232 8.92847 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028619 B = 0.003784 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.133683 B = 7397.889104 C = 7661.603518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.262 3.738 3 H 0.007 0.993 4 C -0.536 4.536 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.963 3.037 9 H -0.269 1.269 10 H -0.268 1.268 11 H -0.289 1.289 12 N -0.603 5.603 13 C 0.077 3.923 14 C 0.495 3.505 15 O -0.600 6.600 16 C -0.096 4.096 17 C -0.038 4.038 18 C -0.115 4.115 19 C -0.066 4.066 20 C -0.052 4.052 21 C 0.283 3.717 22 N -0.468 5.468 23 C -0.067 4.067 24 C -0.117 4.117 25 H 0.020 0.980 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.263 0.737 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.572 -8.541 -14.405 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.160 3.840 3 H 0.025 0.975 4 C -0.574 4.574 5 H 0.082 0.918 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.788 3.212 9 H -0.194 1.194 10 H -0.193 1.193 11 H -0.215 1.215 12 N -0.334 5.334 13 C -0.066 4.066 14 C 0.285 3.715 15 O -0.482 6.482 16 C -0.135 4.135 17 C -0.039 4.039 18 C -0.133 4.133 19 C -0.087 4.087 20 C -0.055 4.055 21 C -0.031 4.031 22 N -0.145 5.145 23 C -0.087 4.087 24 C -0.135 4.135 25 H 0.039 0.961 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.165 0.835 35 H 0.168 0.832 36 H 0.165 0.835 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.599 -6.746 -15.121 17.185 hybrid contribution -0.125 -0.094 1.509 1.518 sum 4.474 -6.840 -13.612 15.877 Atomic orbital electron populations 1.21868 0.97425 1.00020 0.99782 1.18458 0.91397 0.92194 0.81964 0.97510 1.21628 1.31648 1.12994 0.91154 0.91806 1.25741 0.95189 0.95627 1.02079 1.70034 1.37559 1.23989 1.24280 0.85486 0.78950 0.78199 0.78561 1.19387 1.19279 1.21541 1.48248 1.49279 1.13505 1.22351 1.21902 1.01627 0.80425 1.02608 1.21266 0.78264 0.86798 0.85203 1.90664 1.59766 1.19686 1.78077 1.20858 1.01880 0.98144 0.92605 1.19861 0.94049 0.95822 0.94169 1.21185 1.00987 0.95607 0.95494 1.21321 0.91167 0.97174 0.98988 1.16074 0.92452 0.98283 0.98699 1.25905 0.92455 0.92404 0.92320 1.81250 1.10309 1.11542 1.11359 1.21299 1.01089 0.93513 0.92848 1.21176 0.93379 0.99552 0.99417 0.96098 0.93479 0.91813 0.92804 0.91534 0.88391 0.91760 0.85146 0.84739 0.83492 0.83246 0.83473 0.83969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.17 8.97 71.98 0.65 -5.52 16 2 C 0.26 13.08 2.64 44.24 0.12 13.19 16 3 H 0.01 0.42 6.90 -2.39 -0.02 0.40 16 4 C -0.54 -28.07 7.99 25.60 0.20 -27.87 16 5 H 0.06 3.20 7.33 -2.91 -0.02 3.18 16 6 C 0.01 0.69 5.30 84.66 0.45 1.14 16 7 N -0.92 -52.45 11.32 21.45 0.24 -52.21 16 8 Si 0.96 42.03 29.54 68.60 2.03 44.06 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 12 N -0.60 -22.98 2.75 -826.80 -2.28 -25.25 16 13 C 0.08 2.03 9.24 127.77 1.18 3.21 16 14 C 0.50 17.78 7.67 87.66 0.67 18.45 16 15 O -0.60 -28.03 15.36 -3.03 -0.05 -28.08 16 16 C -0.10 -2.00 4.38 29.10 0.13 -1.87 16 17 C -0.04 -0.82 4.38 -19.81 -0.09 -0.91 16 18 C -0.11 -2.26 9.68 22.23 0.22 -2.05 16 19 C -0.07 -1.24 9.76 22.54 0.22 -1.02 16 20 C -0.05 -1.06 5.73 -21.36 -0.12 -1.18 16 21 C 0.28 6.64 15.33 88.33 1.35 8.00 16 22 N -0.47 -13.03 18.54 19.00 0.35 -12.68 16 23 C -0.07 -1.30 9.76 22.54 0.22 -1.08 16 24 C -0.12 -2.43 9.68 22.23 0.22 -2.21 16 25 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.05 1.97 7.67 -2.39 -0.02 1.95 16 27 H 0.06 3.36 6.07 -2.39 -0.01 3.34 16 28 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.10 1.73 6.44 -2.38 -0.02 1.71 16 31 H 0.06 1.94 7.02 -2.39 -0.02 1.92 16 32 H 0.13 2.00 7.34 -2.39 -0.02 1.98 16 33 H 0.13 1.92 8.05 -2.39 -0.02 1.90 16 34 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -72.36 322.96 6.79 -65.57 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.08 Total: 8.32 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 5.41 Total: 0.27 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -1.68 Total: -90.14 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.05 Total: -28.08 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -72.36 6.79 -65.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110513398.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.741 kcal (2) G-P(sol) polarization free energy of solvation -72.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds