Wall clock time and date at job start Mon Mar 30 2020 01:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47193 * 2 1 4 4 C 1.50696 * 109.47106 * 240.00066 * 2 1 3 5 5 H 1.08006 * 120.00263 * 245.62402 * 4 2 1 6 6 C 1.37875 * 120.00299 * 65.61831 * 4 2 1 7 7 N 1.31511 * 120.00157 * 196.97108 * 6 4 2 8 8 Si 1.86798 * 119.99893 * 17.24348 * 6 4 2 9 9 H 1.48496 * 109.47439 * 179.72791 * 8 6 4 10 10 H 1.48507 * 109.47069 * 299.72536 * 8 6 4 11 11 H 1.48497 * 109.47361 * 59.72470 * 8 6 4 12 12 N 1.46504 * 109.47160 * 119.99809 * 2 1 3 13 13 C 1.46504 * 119.99520 * 60.00191 * 12 2 1 14 14 C 1.34773 * 119.99967 * 239.99712 * 12 2 1 15 15 O 1.21276 * 120.00208 * 0.02562 * 14 12 2 16 16 C 1.50697 * 119.99611 * 179.97438 * 14 12 2 17 17 C 1.50705 * 109.46769 * 180.02562 * 16 14 12 18 18 C 1.38357 * 119.84899 * 269.72098 * 17 16 14 19 19 C 1.37945 * 120.15412 * 179.76732 * 18 17 16 20 20 C 1.39636 * 119.84120 * 0.53324 * 19 18 17 21 21 C 1.43205 * 120.14904 * 179.70451 * 20 19 18 22 22 N 9.65520 * 125.22222 * 63.22608 * 2 1 3 23 23 C 1.39627 * 119.70243 * 359.72256 * 20 19 18 24 24 C 1.37947 * 119.84544 * 0.02562 * 23 20 19 25 25 H 1.08997 * 109.47120 * 305.88392 * 1 2 3 26 26 H 1.08996 * 109.47559 * 65.88235 * 1 2 3 27 27 H 1.08995 * 109.47228 * 185.88417 * 1 2 3 28 28 H 0.96996 * 120.00531 * 355.07916 * 7 6 4 29 29 H 1.08999 * 109.47383 * 90.00059 * 13 12 2 30 30 H 1.09000 * 109.46583 * 210.00076 * 13 12 2 31 31 H 1.08995 * 109.47202 * 329.99662 * 13 12 2 32 32 H 1.09003 * 109.47647 * 300.00130 * 16 14 12 33 33 H 1.09000 * 109.47342 * 60.00595 * 16 14 12 34 34 H 1.08009 * 119.92294 * 0.02562 * 18 17 16 35 35 H 1.08003 * 120.08219 * 180.26275 * 19 18 17 36 36 H 1.08002 * 120.07605 * 179.97438 * 23 20 19 37 37 H 1.07996 * 119.92769 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7974 -0.1757 -2.4794 7 7 1.9263 -0.9269 -3.5511 8 14 1.3034 1.6177 -2.6498 9 1 1.1172 1.9456 -4.0860 10 1 0.0317 1.8524 -1.9196 11 1 2.3684 2.4809 -2.0790 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2950 -0.7458 3.3140 17 6 4.1319 0.2016 4.1345 18 6 5.4953 0.2838 3.9138 19 6 6.2666 1.1523 4.6580 20 6 5.6700 1.9414 5.6434 21 6 6.4654 2.8406 6.4240 22 7 7.0986 3.5531 7.0419 23 6 4.2944 1.8495 5.8645 24 6 3.5342 0.9806 5.1095 25 1 -0.3633 0.6023 0.8326 26 1 -0.3634 0.4199 -0.9379 27 1 -0.3633 -1.0222 0.1053 28 1 2.2553 -1.8357 -3.4698 29 1 2.4157 -2.7377 0.9717 30 1 1.6237 -2.2852 2.5002 31 1 0.6904 -2.3002 0.9847 32 1 2.4470 -1.0880 3.9073 33 1 3.9004 -1.6025 3.0178 34 1 5.9562 -0.3305 3.1543 35 1 7.3301 1.2186 4.4818 36 1 3.8267 2.4568 6.6254 37 1 2.4702 0.9081 5.2796 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110513401.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:08 Heat of formation + Delta-G solvation = 18.216302 kcal Electronic energy + Delta-G solvation = -19918.710595 eV Core-core repulsion = 16854.223791 eV Total energy + Delta-G solvation = -3064.486804 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.02939 -38.87301 -36.62570 -35.53916 -33.24643 -32.63373 -31.22958 -30.39650 -27.97305 -26.31947 -24.77926 -23.12949 -22.92590 -20.82879 -19.05601 -18.37978 -17.56297 -16.60244 -15.95468 -15.84666 -15.07950 -14.80535 -14.63637 -14.14001 -13.75717 -13.66136 -13.19649 -13.11189 -13.03526 -12.76655 -12.74409 -12.23744 -12.16213 -11.90518 -11.73052 -11.53611 -11.43653 -11.30756 -11.13908 -10.50692 -10.00991 -9.78640 -9.32791 -9.14683 -9.10213 -8.77607 -8.36580 -7.82820 -6.52645 -4.17717 0.62667 1.23099 2.50692 2.78542 3.17466 3.35084 3.46509 3.56923 3.63716 3.75141 3.91680 4.42459 4.60085 4.64575 4.72361 5.03664 5.15965 5.18515 5.21249 5.42223 5.45836 5.54068 5.68511 5.83586 5.89194 6.05554 6.12524 6.13627 6.33060 6.37431 6.41919 6.55659 6.67199 6.91566 7.10205 7.31962 7.37645 7.80199 8.23222 8.30150 8.71284 8.89014 9.50942 10.85077 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026531 B = 0.004103 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.112979 B = 6822.004663 C = 7204.026708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.234 3.766 3 H 0.055 0.945 4 C -0.611 4.611 5 H 0.060 0.940 6 C 0.036 3.964 7 N -0.901 5.901 8 Si 1.040 2.960 9 H -0.284 1.284 10 H -0.273 1.273 11 H -0.278 1.278 12 N -0.588 5.588 13 C 0.086 3.914 14 C 0.506 3.494 15 O -0.546 6.546 16 C -0.111 4.111 17 C -0.023 4.023 18 C -0.106 4.106 19 C -0.066 4.066 20 C -0.042 4.042 21 C 0.262 3.738 22 N -0.429 5.429 23 C -0.068 4.068 24 C -0.108 4.108 25 H 0.026 0.974 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.268 0.732 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.315 -2.195 16.651 16.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.132 3.868 3 H 0.073 0.927 4 C -0.649 4.649 5 H 0.078 0.922 6 C -0.170 4.170 7 N -0.535 5.535 8 Si 0.867 3.133 9 H -0.210 1.210 10 H -0.199 1.199 11 H -0.204 1.204 12 N -0.319 5.319 13 C -0.057 4.057 14 C 0.292 3.708 15 O -0.424 6.424 16 C -0.150 4.150 17 C -0.024 4.024 18 C -0.124 4.124 19 C -0.087 4.087 20 C -0.045 4.045 21 C -0.053 4.053 22 N -0.105 5.105 23 C -0.088 4.088 24 C -0.126 4.126 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.981 0.659 16.361 16.494 hybrid contribution 0.215 -1.688 0.721 1.848 sum 2.197 -1.029 17.083 17.254 Atomic orbital electron populations 1.22524 0.98737 1.00290 1.00437 1.19191 0.90346 0.94751 0.82489 0.92717 1.22163 1.41185 1.10486 0.91060 0.92178 1.25675 0.94547 1.04902 0.91867 1.70877 1.41305 1.09996 1.31312 0.84121 0.77474 0.75456 0.76199 1.20950 1.19946 1.20435 1.47973 1.49120 1.11760 1.23047 1.21592 1.01845 0.82857 0.99447 1.20194 0.79351 0.87154 0.84089 1.90682 1.57969 1.16978 1.76780 1.20859 1.00419 0.98317 0.95444 1.19671 0.93683 0.95239 0.93793 1.20975 0.93243 0.99087 0.99130 1.21102 1.00196 0.94010 0.93391 1.15967 0.92133 0.98083 0.98319 1.25780 0.93258 0.93124 0.93173 1.81232 1.09001 1.10232 1.09993 1.21077 0.91495 0.97425 0.98832 1.20926 1.00076 0.95928 0.95690 0.95501 0.91577 0.93369 0.92233 0.93072 0.92600 0.90809 0.87993 0.87904 0.84923 0.85072 0.85128 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 8.96 37.16 0.33 -3.03 16 2 C 0.23 5.43 2.22 -69.08 -0.15 5.27 16 3 H 0.06 1.41 5.56 -51.93 -0.29 1.12 16 4 C -0.61 -16.33 8.68 -34.44 -0.30 -16.63 16 5 H 0.06 1.71 7.75 -52.48 -0.41 1.30 16 6 C 0.04 1.01 5.30 -17.82 -0.09 0.91 16 7 N -0.90 -26.71 13.70 55.43 0.76 -25.95 16 8 Si 1.04 24.92 26.29 -169.99 -4.47 20.45 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.27 -5.98 5.74 56.52 0.32 -5.66 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.59 -11.24 2.75 -175.26 -0.48 -11.72 16 13 C 0.09 1.27 9.43 59.85 0.56 1.84 16 14 C 0.51 9.05 7.67 -10.99 -0.08 8.97 16 15 O -0.55 -12.00 15.36 5.56 0.09 -11.91 16 16 C -0.11 -1.30 4.38 -29.03 -0.13 -1.42 16 17 C -0.02 -0.26 4.38 -104.53 -0.46 -0.72 16 18 C -0.11 -1.17 9.68 -39.64 -0.38 -1.56 16 19 C -0.07 -0.68 9.76 -39.17 -0.38 -1.06 16 20 C -0.04 -0.44 5.73 -106.93 -0.61 -1.05 16 21 C 0.26 3.10 15.33 -22.47 -0.34 2.76 16 22 N -0.43 -5.94 18.54 41.83 0.78 -5.17 16 23 C -0.07 -0.66 9.76 -39.17 -0.38 -1.05 16 24 C -0.11 -1.13 9.68 -39.64 -0.38 -1.51 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 1.44 4.85 -51.93 -0.25 1.19 16 27 H 0.05 0.93 6.45 -51.93 -0.33 0.59 16 28 H 0.27 7.86 8.73 -40.82 -0.36 7.50 16 29 H 0.05 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.06 0.58 6.44 -51.93 -0.33 0.25 16 31 H 0.07 1.12 6.33 -51.93 -0.33 0.79 16 32 H 0.10 0.91 7.34 -51.93 -0.38 0.53 16 33 H 0.10 1.02 8.05 -51.93 -0.42 0.61 16 34 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 35 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 317.46 15.07 4.78 4.78 Total: -1.00 -33.09 317.46 -5.86 -38.95 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.51 Total: -1.15 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -2.81 Total: -8.28 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 1.05 Total: -42.84 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -4.47 Total: 20.45 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.09 -5.86 -38.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110513401.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.166 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds