Wall clock time and date at job start Mon Mar 30 2020 01:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47193 * 2 1 4 4 C 1.50696 * 109.47106 * 240.00066 * 2 1 3 5 5 H 1.08006 * 120.00263 * 245.62402 * 4 2 1 6 6 C 1.37875 * 120.00299 * 65.61831 * 4 2 1 7 7 N 1.31511 * 120.00157 * 196.97108 * 6 4 2 8 8 Si 1.86798 * 119.99893 * 17.24348 * 6 4 2 9 9 H 1.48496 * 109.47439 * 179.72791 * 8 6 4 10 10 H 1.48507 * 109.47069 * 299.72536 * 8 6 4 11 11 H 1.48497 * 109.47361 * 59.72470 * 8 6 4 12 12 N 1.46504 * 109.47160 * 119.99809 * 2 1 3 13 13 C 1.46504 * 119.99520 * 60.00191 * 12 2 1 14 14 C 1.34773 * 119.99967 * 239.99712 * 12 2 1 15 15 O 1.21276 * 120.00208 * 0.02562 * 14 12 2 16 16 C 1.50697 * 119.99611 * 179.97438 * 14 12 2 17 17 C 1.50705 * 109.46769 * 180.02562 * 16 14 12 18 18 C 1.38357 * 119.84899 * 269.72098 * 17 16 14 19 19 C 1.37945 * 120.15412 * 179.76732 * 18 17 16 20 20 C 1.39636 * 119.84120 * 0.53324 * 19 18 17 21 21 C 1.43205 * 120.14904 * 179.70451 * 20 19 18 22 22 N 9.65520 * 125.22222 * 63.22608 * 2 1 3 23 23 C 1.39627 * 119.70243 * 359.72256 * 20 19 18 24 24 C 1.37947 * 119.84544 * 0.02562 * 23 20 19 25 25 H 1.08997 * 109.47120 * 305.88392 * 1 2 3 26 26 H 1.08996 * 109.47559 * 65.88235 * 1 2 3 27 27 H 1.08995 * 109.47228 * 185.88417 * 1 2 3 28 28 H 0.96996 * 120.00531 * 355.07916 * 7 6 4 29 29 H 1.08999 * 109.47383 * 90.00059 * 13 12 2 30 30 H 1.09000 * 109.46583 * 210.00076 * 13 12 2 31 31 H 1.08995 * 109.47202 * 329.99662 * 13 12 2 32 32 H 1.09003 * 109.47647 * 300.00130 * 16 14 12 33 33 H 1.09000 * 109.47342 * 60.00595 * 16 14 12 34 34 H 1.08009 * 119.92294 * 0.02562 * 18 17 16 35 35 H 1.08003 * 120.08219 * 180.26275 * 19 18 17 36 36 H 1.08002 * 120.07605 * 179.97438 * 23 20 19 37 37 H 1.07996 * 119.92769 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7974 -0.1757 -2.4794 7 7 1.9263 -0.9269 -3.5511 8 14 1.3034 1.6177 -2.6498 9 1 1.1172 1.9456 -4.0860 10 1 0.0317 1.8524 -1.9196 11 1 2.3684 2.4809 -2.0790 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2950 -0.7458 3.3140 17 6 4.1319 0.2016 4.1345 18 6 5.4953 0.2838 3.9138 19 6 6.2666 1.1523 4.6580 20 6 5.6700 1.9414 5.6434 21 6 6.4654 2.8406 6.4240 22 7 7.0986 3.5531 7.0419 23 6 4.2944 1.8495 5.8645 24 6 3.5342 0.9806 5.1095 25 1 -0.3633 0.6023 0.8326 26 1 -0.3634 0.4199 -0.9379 27 1 -0.3633 -1.0222 0.1053 28 1 2.2553 -1.8357 -3.4698 29 1 2.4157 -2.7377 0.9717 30 1 1.6237 -2.2852 2.5002 31 1 0.6904 -2.3002 0.9847 32 1 2.4470 -1.0880 3.9073 33 1 3.9004 -1.6025 3.0178 34 1 5.9562 -0.3305 3.1543 35 1 7.3301 1.2186 4.4818 36 1 3.8267 2.4568 6.6254 37 1 2.4702 0.9081 5.2796 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110513401.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:08 Heat of formation + Delta-G solvation = -2.181293 kcal Electronic energy + Delta-G solvation = -19919.595102 eV Core-core repulsion = 16854.223791 eV Total energy + Delta-G solvation = -3065.371310 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.12120 -40.01187 -37.64688 -37.09906 -34.87332 -33.93683 -32.04520 -31.99796 -28.99368 -27.62413 -26.72003 -24.22327 -23.70075 -22.33613 -19.93042 -19.88138 -19.48378 -18.00088 -17.05140 -16.91875 -16.30669 -16.05500 -15.54383 -15.44352 -15.07995 -14.75243 -14.59022 -14.41948 -14.29751 -13.98074 -13.93055 -13.66790 -13.40057 -13.19745 -13.08653 -12.92254 -12.71495 -12.36277 -12.34826 -11.93106 -11.80660 -11.63160 -11.14388 -10.69094 -10.45420 -9.91199 -9.69464 -9.44001 -8.68282 -6.37514 -0.21945 0.46403 1.43214 1.52811 1.57598 1.69499 1.83199 1.87677 2.42098 2.43868 2.85064 2.95029 3.05843 3.71133 3.88529 3.94089 4.00581 4.35067 4.41481 4.46868 4.55763 4.67000 4.67444 4.71136 4.77187 4.82259 4.87587 5.03371 5.09721 5.18556 5.26361 5.35278 5.46291 5.61477 5.75414 5.85643 5.90172 6.05309 6.40433 6.59280 6.80922 7.33330 7.47085 8.64285 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026531 B = 0.004103 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.112979 B = 6822.004663 C = 7204.026708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.233 3.767 3 H 0.030 0.970 4 C -0.603 4.603 5 H 0.032 0.968 6 C -0.011 4.011 7 N -0.934 5.934 8 Si 1.072 2.928 9 H -0.285 1.285 10 H -0.238 1.238 11 H -0.282 1.282 12 N -0.600 5.600 13 C 0.082 3.918 14 C 0.499 3.501 15 O -0.593 6.593 16 C -0.097 4.097 17 C -0.039 4.039 18 C -0.119 4.119 19 C -0.068 4.068 20 C -0.050 4.050 21 C 0.283 3.717 22 N -0.468 5.468 23 C -0.065 4.065 24 C -0.111 4.111 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.255 0.745 29 H 0.042 0.958 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.140 0.860 33 H 0.124 0.876 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.174 -2.425 18.884 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.129 3.871 3 H 0.047 0.953 4 C -0.642 4.642 5 H 0.050 0.950 6 C -0.211 4.211 7 N -0.570 5.570 8 Si 0.894 3.106 9 H -0.211 1.211 10 H -0.162 1.162 11 H -0.208 1.208 12 N -0.330 5.330 13 C -0.060 4.060 14 C 0.288 3.712 15 O -0.475 6.475 16 C -0.136 4.136 17 C -0.040 4.040 18 C -0.137 4.137 19 C -0.088 4.088 20 C -0.054 4.054 21 C -0.031 4.031 22 N -0.144 5.144 23 C -0.085 4.085 24 C -0.129 4.129 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.127 0.873 31 H 0.086 0.914 32 H 0.158 0.842 33 H 0.142 0.858 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.170 0.830 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.829 0.386 18.634 18.656 hybrid contribution 0.640 -1.685 0.067 1.804 sum 1.469 -1.299 18.701 18.803 Atomic orbital electron populations 1.22356 0.96535 1.01578 1.00708 1.18877 0.91934 0.93298 0.82977 0.95251 1.22372 1.39697 1.09255 0.92842 0.94960 1.26812 0.94661 1.07613 0.91982 1.70984 1.43927 1.09767 1.32340 0.83715 0.78800 0.71594 0.76447 1.21101 1.16209 1.20823 1.48034 1.49617 1.13353 1.22037 1.21829 1.01062 0.80207 1.02877 1.21242 0.77963 0.86794 0.85196 1.90656 1.59384 1.19360 1.78091 1.20859 1.01961 0.98095 0.92678 1.19831 0.93900 0.95882 0.94368 1.21154 0.93552 0.99517 0.99475 1.21279 1.01035 0.93538 0.92970 1.16075 0.92571 0.98178 0.98534 1.25911 0.92460 0.92422 0.92348 1.81252 1.10195 1.11594 1.11381 1.21339 0.91047 0.97184 0.98932 1.21193 1.01128 0.95396 0.95212 0.93167 0.92852 0.92069 0.93552 0.93883 0.87268 0.91434 0.84194 0.85819 0.84404 0.83670 0.83046 0.83078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.05 8.96 71.98 0.64 -5.41 16 2 C 0.23 10.60 2.22 44.24 0.10 10.69 16 3 H 0.03 1.51 5.56 -2.39 -0.01 1.49 16 4 C -0.60 -32.64 8.68 25.60 0.22 -32.41 16 5 H 0.03 1.88 7.75 -2.91 -0.02 1.86 16 6 C -0.01 -0.62 5.30 84.65 0.45 -0.17 16 7 N -0.93 -56.74 13.70 21.45 0.29 -56.45 16 8 Si 1.07 50.33 26.29 68.60 1.80 52.14 16 9 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 10 H -0.24 -9.77 5.74 99.48 0.57 -9.20 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 12 N -0.60 -21.78 2.75 -826.80 -2.28 -24.05 16 13 C 0.08 2.20 9.43 127.77 1.20 3.40 16 14 C 0.50 16.77 7.67 87.66 0.67 17.44 16 15 O -0.59 -25.55 15.36 -3.02 -0.05 -25.60 16 16 C -0.10 -1.90 4.38 29.10 0.13 -1.78 16 17 C -0.04 -0.78 4.38 -19.80 -0.09 -0.87 16 18 C -0.12 -2.40 9.68 22.23 0.22 -2.18 16 19 C -0.07 -1.27 9.76 22.54 0.22 -1.05 16 20 C -0.05 -0.97 5.73 -21.36 -0.12 -1.09 16 21 C 0.28 6.36 15.33 88.33 1.35 7.71 16 22 N -0.47 -12.64 18.54 19.00 0.35 -12.29 16 23 C -0.06 -1.10 9.76 22.54 0.22 -0.88 16 24 C -0.11 -1.96 9.68 22.23 0.22 -1.75 16 25 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.05 2.21 4.85 -2.39 -0.01 2.20 16 27 H 0.06 2.22 6.45 -2.39 -0.02 2.20 16 28 H 0.26 15.56 8.73 -92.71 -0.81 14.76 16 29 H 0.04 1.21 8.09 -2.39 -0.02 1.19 16 30 H 0.11 1.72 6.44 -2.39 -0.02 1.71 16 31 H 0.07 1.88 6.33 -2.39 -0.02 1.87 16 32 H 0.14 1.70 7.34 -2.39 -0.02 1.68 16 33 H 0.12 1.96 8.05 -2.39 -0.02 1.94 16 34 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 35 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 37 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -74.40 317.46 6.47 -67.93 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 0.91 Total: 6.67 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 5.43 Total: -8.35 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -1.63 Total: -92.78 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.60 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 1.80 Total: 52.14 kcal Total: -74.40 6.47 -67.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110513401.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.748 kcal (2) G-P(sol) polarization free energy of solvation -74.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds