Wall clock time and date at job start Mon Mar 30 2020 01:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46910 * 2 1 4 4 C 1.36939 * 119.99702 * 275.31384 * 3 2 1 5 5 H 1.07998 * 119.99745 * 35.80335 * 4 3 2 6 6 C 1.38805 * 120.00224 * 215.79689 * 4 3 2 7 7 N 1.31622 * 119.99750 * 21.62806 * 6 4 3 8 8 Si 1.86802 * 120.00322 * 201.62604 * 6 4 3 9 9 H 1.48500 * 109.46944 * 60.00232 * 8 6 4 10 10 H 1.48508 * 109.46967 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47000 * 300.00162 * 8 6 4 12 12 C 1.46498 * 120.00312 * 95.31307 * 3 2 1 13 13 C 1.50692 * 109.47511 * 270.00086 * 12 3 2 14 14 C 1.35598 * 119.87852 * 95.01674 * 13 12 3 15 15 C 1.46408 * 118.53305 * 179.97438 * 14 13 12 16 16 C 1.39889 * 121.15305 * 179.97438 * 15 14 13 17 17 C 1.36594 * 119.72081 * 180.02562 * 16 15 14 18 18 C 1.38837 * 120.58727 * 359.96142 * 17 16 15 19 19 C 1.37805 * 120.69460 * 0.06350 * 18 17 16 20 20 C 1.39127 * 119.74492 * 359.95827 * 19 18 17 21 21 N 1.37862 * 120.97248 * 179.97438 * 20 19 18 22 22 H 0.97001 * 119.51781 * 0.04307 * 21 20 19 23 23 C 1.34449 * 120.95261 * 180.02562 * 21 20 19 24 24 O 1.21877 * 119.17380 * 179.97438 * 23 21 20 25 25 H 1.08996 * 109.47193 * 300.00209 * 1 2 3 26 26 H 1.08999 * 109.47134 * 60.00484 * 1 2 3 27 27 H 1.09001 * 109.46891 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47193 * 239.99791 * 2 1 3 29 29 H 1.08999 * 109.47134 * 119.99516 * 2 1 3 30 30 H 0.97010 * 119.99980 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.46792 * 149.99797 * 12 3 2 32 32 H 1.08996 * 109.46885 * 30.00451 * 12 3 2 33 33 H 1.07994 * 120.73467 * 359.97438 * 14 13 12 34 34 H 1.07995 * 120.13563 * 359.75134 * 16 15 14 35 35 H 1.07997 * 119.70933 * 179.97438 * 17 16 15 36 36 H 1.07998 * 119.65677 * 180.02562 * 18 17 16 37 37 H 1.08002 * 120.13289 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1429 2.0634 -1.1809 5 1 1.4263 1.9062 -1.9734 6 6 3.1902 2.9568 -1.3591 7 7 4.2751 2.8548 -0.6210 8 14 3.0598 4.3040 -2.6467 9 1 1.8957 5.1727 -2.3379 10 1 4.3017 5.1182 -2.6387 11 1 2.8786 3.6915 -3.9872 12 6 2.3732 2.0328 1.2632 13 6 1.1612 2.7277 1.8280 14 6 0.3867 2.0965 2.7447 15 6 -0.7835 2.7993 3.2743 16 6 -1.6203 2.1998 4.2215 17 6 -2.7046 2.8820 4.6955 18 6 -2.9833 4.1657 4.2462 19 6 -2.1731 4.7758 3.3132 20 6 -1.0633 4.1003 2.8157 21 7 -0.2360 4.6863 1.8814 22 1 -0.4303 5.5831 1.5667 23 6 0.8361 4.0329 1.4005 24 8 1.5452 4.5816 0.5749 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.0072 3.4789 -0.7458 31 1 3.1617 2.7642 1.0858 32 1 2.7257 1.2835 1.9720 33 1 0.6276 1.0976 3.0769 34 1 -1.4124 1.2000 4.5732 35 1 -3.3508 2.4188 5.4264 36 1 -3.8444 4.6916 4.6314 37 1 -2.3986 5.7746 2.9697 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111208027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:13 Heat of formation + Delta-G solvation = 10.504818 kcal Electronic energy + Delta-G solvation = -21170.766858 eV Core-core repulsion = 18105.945659 eV Total energy + Delta-G solvation = -3064.821199 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.08633 -39.51861 -37.85665 -36.24489 -34.94306 -33.71338 -31.84838 -30.55942 -30.08146 -27.41854 -25.46775 -24.67425 -23.64225 -23.15687 -22.01423 -19.37745 -18.95238 -18.27135 -18.06504 -16.86894 -16.45684 -16.36460 -15.79849 -15.53016 -15.35419 -15.23719 -14.70770 -14.42228 -14.18425 -13.91226 -13.72568 -13.30470 -13.09145 -12.75426 -12.62491 -12.46161 -12.41284 -12.06858 -11.99112 -11.86945 -11.71343 -11.61784 -10.98858 -10.91354 -10.39638 -9.34618 -8.79568 -8.54774 -7.78551 -5.35350 -0.30373 0.38692 0.99392 1.34684 1.43310 1.52236 2.10627 2.31539 2.56481 3.10341 3.39798 3.73786 3.75920 3.85170 3.89725 4.14438 4.38047 4.44389 4.44875 4.51651 4.72627 4.78627 4.86512 4.88827 5.02234 5.08012 5.15958 5.23628 5.30294 5.39793 5.55642 5.58943 5.63975 5.69640 5.84490 5.92991 5.98348 6.24350 6.52050 7.23319 7.24937 7.95003 8.40890 9.17397 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022615 B = 0.006717 C = 0.005724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.802067 B = 4167.738145 C = 4890.693324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 N -0.587 5.587 4 C -0.259 4.259 5 H 0.039 0.961 6 C 0.003 3.997 7 N -0.907 5.907 8 Si 0.938 3.062 9 H -0.295 1.295 10 H -0.294 1.294 11 H -0.276 1.276 12 C 0.190 3.810 13 C -0.191 4.191 14 C -0.032 4.032 15 C -0.140 4.140 16 C -0.061 4.061 17 C -0.150 4.150 18 C -0.068 4.068 19 C -0.172 4.172 20 C 0.153 3.847 21 N -0.635 5.635 22 H 0.412 0.588 23 C 0.523 3.477 24 O -0.555 6.555 25 H 0.049 0.951 26 H 0.021 0.979 27 H 0.071 0.929 28 H 0.032 0.968 29 H 0.058 0.942 30 H 0.247 0.753 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.393 -1.337 14.635 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.012 3.988 3 N -0.307 5.307 4 C -0.389 4.389 5 H 0.056 0.944 6 C -0.195 4.195 7 N -0.550 5.550 8 Si 0.769 3.231 9 H -0.223 1.223 10 H -0.221 1.221 11 H -0.202 1.202 12 C 0.064 3.936 13 C -0.197 4.197 14 C -0.054 4.054 15 C -0.143 4.143 16 C -0.079 4.079 17 C -0.168 4.168 18 C -0.087 4.087 19 C -0.192 4.192 20 C 0.052 3.948 21 N -0.274 5.274 22 H 0.250 0.750 23 C 0.320 3.680 24 O -0.435 6.435 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.175 0.825 34 H 0.173 0.827 35 H 0.177 0.823 36 H 0.178 0.822 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.668 -1.140 14.103 21.111 hybrid contribution 0.295 1.562 -1.315 2.063 sum -15.374 0.422 12.788 20.001 Atomic orbital electron populations 1.22174 0.97964 1.00793 1.00264 1.21021 0.93296 0.85181 0.99352 1.43896 1.76008 1.09220 1.01550 1.18780 1.05113 1.21126 0.93831 0.94381 1.25278 0.93916 1.01297 0.99056 1.70001 1.04690 1.36956 1.43385 0.85810 0.76222 0.81287 0.79781 1.22254 1.22057 1.20199 1.19639 0.92489 0.95801 0.85692 1.21915 1.03776 0.94004 1.00008 1.22588 0.91005 0.99174 0.92588 1.18963 0.98950 0.93475 1.02887 1.21165 0.93040 1.00526 0.93196 1.21195 0.98272 0.95246 1.02107 1.21473 0.98391 0.95013 0.93799 1.20999 0.94812 1.01656 1.01757 1.18441 0.92206 0.93386 0.90789 1.43483 1.25304 1.19232 1.39368 0.75014 1.17441 0.80494 0.88269 0.81840 1.90960 1.50243 1.68836 1.33415 0.93201 0.95948 0.91007 0.94906 0.92361 0.94425 0.91152 0.93037 0.82524 0.82715 0.82346 0.82180 0.83737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.45 10.21 71.98 0.73 -4.72 16 2 C 0.14 5.73 6.44 86.38 0.56 6.28 16 3 N -0.59 -30.39 2.43 -706.36 -1.72 -32.11 16 4 C -0.26 -15.33 9.09 84.03 0.76 -14.56 16 5 H 0.04 2.32 7.92 -2.91 -0.02 2.30 16 6 C 0.00 0.19 3.99 84.86 0.34 0.52 16 7 N -0.91 -56.97 11.36 21.65 0.25 -56.73 16 8 Si 0.94 51.43 29.34 68.60 2.01 53.44 16 9 H -0.30 -16.84 7.11 99.48 0.71 -16.13 16 10 H -0.29 -15.96 7.11 99.48 0.71 -15.25 16 11 H -0.28 -14.26 7.11 99.48 0.71 -13.56 16 12 C 0.19 9.41 5.16 85.63 0.44 9.85 16 13 C -0.19 -8.14 5.40 -19.76 -0.11 -8.25 16 14 C -0.03 -1.01 8.22 23.79 0.20 -0.81 16 15 C -0.14 -3.79 5.87 -20.14 -0.12 -3.91 16 16 C -0.06 -1.13 9.79 22.29 0.22 -0.91 16 17 C -0.15 -2.11 9.97 22.03 0.22 -1.89 16 18 C -0.07 -0.99 10.01 22.31 0.22 -0.77 16 19 C -0.17 -3.44 9.92 22.38 0.22 -3.22 16 20 C 0.15 4.33 6.65 39.02 0.26 4.59 16 21 N -0.64 -22.15 5.30 -312.13 -1.65 -23.81 16 22 H 0.41 12.68 8.77 -92.71 -0.81 11.87 16 23 C 0.52 23.88 7.65 85.01 0.65 24.53 16 24 O -0.55 -30.97 15.35 -4.92 -0.08 -31.04 16 25 H 0.05 1.72 6.51 -2.39 -0.02 1.70 16 26 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 28 H 0.03 1.43 8.08 -2.39 -0.02 1.41 16 29 H 0.06 2.14 7.83 -2.39 -0.02 2.12 16 30 H 0.25 15.24 8.31 -92.70 -0.77 14.47 16 31 H 0.07 4.19 4.96 -2.39 -0.01 4.18 16 32 H 0.05 2.28 7.76 -2.39 -0.02 2.26 16 33 H 0.16 4.08 8.06 -2.91 -0.02 4.06 16 34 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 36 H 0.16 1.22 8.06 -2.91 -0.02 1.19 16 37 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -78.29 310.16 3.68 -74.60 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 0.27 Total: 8.91 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 4.60 Total: 6.74 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -3.13 Total: -112.64 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.08 Total: -31.04 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 2.01 Total: 53.44 kcal Total: -78.29 3.68 -74.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111208027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.106 kcal (2) G-P(sol) polarization free energy of solvation -78.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds