Wall clock time and date at job start Mon Mar 30 2020 01:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47047 * 2 1 4 4 C 1.36944 * 119.99880 * 265.77514 * 3 2 1 5 5 H 1.08003 * 119.99534 * 146.20561 * 4 3 2 6 6 C 1.38804 * 120.00058 * 326.20774 * 4 3 2 7 7 N 1.31624 * 120.00178 * 337.69104 * 6 4 3 8 8 Si 1.86795 * 120.00183 * 157.69761 * 6 4 3 9 9 H 1.48500 * 109.47468 * 59.99516 * 8 6 4 10 10 H 1.48508 * 109.47655 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47105 * 299.99874 * 8 6 4 12 12 C 1.46496 * 120.00059 * 85.77334 * 3 2 1 13 13 C 1.50699 * 109.46957 * 90.00400 * 12 3 2 14 14 C 1.34551 * 126.08423 * 94.99818 * 13 12 3 15 15 O 1.34774 * 107.27593 * 180.22499 * 14 13 12 16 16 C 1.34437 * 107.68787 * 359.58164 * 15 14 13 17 17 C 1.47830 * 125.72015 * 180.15860 * 16 15 14 18 18 C 1.39572 * 120.14074 * 180.02562 * 17 16 15 19 19 C 1.37958 * 119.85402 * 179.74861 * 18 17 16 20 20 C 1.38358 * 120.14007 * 0.55423 * 19 18 17 21 21 C 1.38353 * 120.29463 * 359.70065 * 20 19 18 22 22 C 1.37958 * 120.14194 * 0.02562 * 21 20 19 23 23 N 1.31222 * 108.54868 * 0.42547 * 16 15 14 24 24 H 1.08996 * 109.47283 * 60.00046 * 1 2 3 25 25 H 1.09003 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47283 * 300.00095 * 1 2 3 27 27 H 1.08997 * 109.47160 * 240.00444 * 2 1 3 28 28 H 1.08996 * 109.47283 * 119.99954 * 2 1 3 29 29 H 0.97000 * 120.00121 * 180.02562 * 7 6 4 30 30 H 1.08991 * 109.47302 * 330.00281 * 12 3 2 31 31 H 1.09007 * 109.47094 * 209.99842 * 12 3 2 32 32 H 1.08000 * 126.35997 * 359.96647 * 14 13 12 33 33 H 1.08000 * 120.06837 * 0.02562 * 18 17 16 34 34 H 1.07995 * 119.93212 * 180.27300 * 19 18 17 35 35 H 1.08001 * 119.85437 * 179.72318 * 20 19 18 36 36 H 1.07999 * 119.92782 * 180.02562 * 21 20 19 37 37 H 1.08008 * 120.06923 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3289 1.9977 -1.1828 5 1 2.1596 3.0579 -1.2998 6 6 2.8612 1.2599 -2.2311 7 7 3.4702 0.1182 -1.9897 8 14 2.7136 1.8872 -3.9843 9 1 3.3860 3.2065 -4.0963 10 1 3.3590 0.9230 -4.9112 11 1 1.2789 2.0313 -4.3393 12 6 2.1743 2.1030 1.2652 13 6 3.5637 1.8783 1.8037 14 6 4.6245 2.6858 1.6215 15 8 5.6700 2.1231 2.2591 16 6 5.2363 0.9859 2.8302 17 6 6.0579 0.0554 3.6330 18 6 5.4855 -1.0972 4.1733 19 6 6.2589 -1.9642 4.9172 20 6 7.5964 -1.6873 5.1377 21 6 8.1687 -0.5439 4.6094 22 6 7.4077 0.3285 3.8589 23 7 3.9628 0.8378 2.5507 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8426 -0.3972 -2.7223 30 1 1.4421 1.7371 1.9849 31 1 2.0177 3.1686 1.0974 32 1 4.6368 3.6107 1.0640 33 1 4.4404 -1.3121 4.0057 34 1 5.8183 -2.8586 5.3322 35 1 8.1965 -2.3670 5.7245 36 1 9.2135 -0.3337 4.7848 37 1 7.8558 1.2206 3.4467 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118002023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:28 Heat of formation + Delta-G solvation = 68.172457 kcal Electronic energy + Delta-G solvation = -20241.156875 eV Core-core repulsion = 17178.836332 eV Total energy + Delta-G solvation = -3062.320543 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.52864 -38.91967 -36.09956 -34.04669 -32.26619 -31.37787 -30.93288 -29.91080 -28.17808 -25.79148 -23.67466 -23.27800 -22.58963 -20.94418 -20.67136 -19.62851 -17.40297 -16.65064 -16.06911 -15.94509 -15.32171 -14.95179 -14.68866 -13.92676 -13.84428 -13.76174 -13.42742 -13.10530 -12.81199 -12.74329 -12.25886 -11.52518 -11.44644 -11.35426 -11.10228 -10.91969 -10.83169 -10.58938 -10.53023 -10.04135 -10.01687 -9.78717 -9.56385 -9.25716 -8.96694 -8.48996 -7.69538 -6.66504 -5.79997 -3.34691 0.90446 1.39873 2.38416 3.24477 3.34083 3.37910 3.41836 3.46033 3.97359 4.42097 4.47828 4.91491 4.93863 5.10962 5.30554 5.39776 5.50395 5.61388 5.71074 5.73571 5.84759 6.02872 6.17410 6.36662 6.39609 6.45033 6.48045 6.54177 6.62033 6.65364 6.70763 6.77338 6.91381 6.99955 7.04868 7.34399 7.74914 7.85390 8.43025 8.48068 9.16230 9.79296 10.36807 11.19646 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022259 B = 0.004760 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.616374 B = 5881.280864 C = 6130.802653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.138 3.862 3 N -0.570 5.570 4 C -0.263 4.263 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.881 5.881 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.214 3.786 13 C 0.002 3.998 14 C -0.072 4.072 15 O -0.208 6.208 16 C 0.196 3.804 17 C 0.005 3.995 18 C -0.075 4.075 19 C -0.122 4.122 20 C -0.114 4.114 21 C -0.123 4.123 22 C -0.098 4.098 23 N -0.450 5.450 24 H 0.048 0.952 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.096 0.904 28 H 0.027 0.973 29 H 0.255 0.745 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.210 0.790 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.601 -0.757 12.447 13.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.012 3.988 3 N -0.289 5.289 4 C -0.393 4.393 5 H 0.082 0.918 6 C -0.189 4.189 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.208 1.208 10 H -0.217 1.217 11 H -0.208 1.208 12 C 0.086 3.914 13 C -0.123 4.123 14 C -0.143 4.143 15 O -0.094 6.094 16 C -0.007 4.007 17 C 0.004 3.996 18 C -0.095 4.095 19 C -0.140 4.140 20 C -0.133 4.133 21 C -0.141 4.141 22 C -0.117 4.117 23 N -0.181 5.181 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.114 0.886 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.226 0.774 33 H 0.156 0.844 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.332 -1.367 12.496 13.654 hybrid contribution 0.548 0.868 -1.470 1.793 sum 5.881 -0.499 11.026 12.506 Atomic orbital electron populations 1.22280 1.00752 0.98718 1.00319 1.20968 0.89681 0.85996 1.02136 1.44060 1.72597 1.12204 1.00043 1.19084 1.36666 0.94208 0.89345 0.91822 1.25155 0.96697 0.97826 0.99237 1.70019 1.35699 1.15663 1.30928 0.86447 0.78007 0.78086 0.84687 1.20752 1.21653 1.20787 1.19499 0.86535 0.96816 0.88515 1.23393 1.01566 0.90201 0.97120 1.24798 0.84764 1.02169 1.02582 1.84370 1.39082 1.32673 1.53290 1.23594 0.90023 0.87341 0.99730 1.17326 0.91861 0.93019 0.97401 1.21227 1.00984 0.92075 0.95179 1.21082 0.94083 0.99546 0.99256 1.21263 0.95270 0.97179 0.99569 1.21011 0.99849 0.94792 0.98433 1.21237 0.92563 0.99909 0.98026 1.70474 1.09017 1.24099 1.14518 0.93326 0.94687 0.94813 0.88617 0.95477 0.93477 0.92742 0.91924 0.77381 0.84407 0.85401 0.85894 0.85631 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 10.24 37.16 0.38 -2.98 16 2 C 0.14 3.39 5.97 -4.04 -0.02 3.37 16 3 N -0.57 -14.26 2.44 -174.62 -0.43 -14.68 16 4 C -0.26 -7.05 9.49 -15.06 -0.14 -7.20 16 5 H 0.06 1.66 7.92 -52.48 -0.42 1.24 16 6 C 0.01 0.32 4.93 -17.43 -0.09 0.24 16 7 N -0.88 -25.73 11.32 55.49 0.63 -25.11 16 8 Si 0.90 21.43 29.61 -169.99 -5.03 16.40 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 C 0.21 4.62 6.22 -5.20 -0.03 4.58 16 13 C 0.00 0.05 6.68 -82.88 -0.55 -0.51 16 14 C -0.07 -1.44 12.08 29.43 0.36 -1.09 16 15 O -0.21 -4.14 10.52 4.04 0.04 -4.09 16 16 C 0.20 3.92 7.90 -13.89 -0.11 3.81 16 17 C 0.01 0.08 5.87 -104.98 -0.62 -0.53 16 18 C -0.08 -1.12 9.69 -39.19 -0.38 -1.50 16 19 C -0.12 -1.42 10.03 -39.64 -0.40 -1.82 16 20 C -0.11 -1.20 10.04 -39.49 -0.40 -1.59 16 21 C -0.12 -1.37 10.03 -39.64 -0.40 -1.77 16 22 C -0.10 -1.35 9.72 -39.19 -0.38 -1.73 16 23 N -0.45 -9.88 10.91 -7.96 -0.09 -9.97 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.10 2.66 5.32 -51.93 -0.28 2.38 16 28 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.05 1.11 8.07 -51.93 -0.42 0.69 16 31 H 0.06 1.22 8.04 -51.93 -0.42 0.81 16 32 H 0.21 3.50 8.06 -52.49 -0.42 3.08 16 33 H 0.14 2.12 7.83 -52.49 -0.41 1.71 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.13 1.66 7.90 -52.48 -0.41 1.25 16 LS Contribution 323.17 15.07 4.87 4.87 Total: -1.00 -31.48 323.17 -7.66 -39.14 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -4.87 Total: 2.16 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -2.78 Total: -8.71 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.12 Total: -49.76 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: 0.04 Total: -4.09 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.48 -7.66 -39.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118002023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.312 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds