Wall clock time and date at job start Mon Mar 30 2020 01:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47047 * 2 1 4 4 C 1.36944 * 119.99880 * 265.77514 * 3 2 1 5 5 H 1.08003 * 119.99534 * 146.20561 * 4 3 2 6 6 C 1.38804 * 120.00058 * 326.20774 * 4 3 2 7 7 N 1.31624 * 120.00178 * 337.69104 * 6 4 3 8 8 Si 1.86795 * 120.00183 * 157.69761 * 6 4 3 9 9 H 1.48500 * 109.47468 * 59.99516 * 8 6 4 10 10 H 1.48508 * 109.47655 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47105 * 299.99874 * 8 6 4 12 12 C 1.46496 * 120.00059 * 85.77334 * 3 2 1 13 13 C 1.50699 * 109.46957 * 90.00400 * 12 3 2 14 14 C 1.34551 * 126.08423 * 94.99818 * 13 12 3 15 15 O 1.34774 * 107.27593 * 180.22499 * 14 13 12 16 16 C 1.34437 * 107.68787 * 359.58164 * 15 14 13 17 17 C 1.47830 * 125.72015 * 180.15860 * 16 15 14 18 18 C 1.39572 * 120.14074 * 180.02562 * 17 16 15 19 19 C 1.37958 * 119.85402 * 179.74861 * 18 17 16 20 20 C 1.38358 * 120.14007 * 0.55423 * 19 18 17 21 21 C 1.38353 * 120.29463 * 359.70065 * 20 19 18 22 22 C 1.37958 * 120.14194 * 0.02562 * 21 20 19 23 23 N 1.31222 * 108.54868 * 0.42547 * 16 15 14 24 24 H 1.08996 * 109.47283 * 60.00046 * 1 2 3 25 25 H 1.09003 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47283 * 300.00095 * 1 2 3 27 27 H 1.08997 * 109.47160 * 240.00444 * 2 1 3 28 28 H 1.08996 * 109.47283 * 119.99954 * 2 1 3 29 29 H 0.97000 * 120.00121 * 180.02562 * 7 6 4 30 30 H 1.08991 * 109.47302 * 330.00281 * 12 3 2 31 31 H 1.09007 * 109.47094 * 209.99842 * 12 3 2 32 32 H 1.08000 * 126.35997 * 359.96647 * 14 13 12 33 33 H 1.08000 * 120.06837 * 0.02562 * 18 17 16 34 34 H 1.07995 * 119.93212 * 180.27300 * 19 18 17 35 35 H 1.08001 * 119.85437 * 179.72318 * 20 19 18 36 36 H 1.07999 * 119.92782 * 180.02562 * 21 20 19 37 37 H 1.08008 * 120.06923 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3289 1.9977 -1.1828 5 1 2.1596 3.0579 -1.2998 6 6 2.8612 1.2599 -2.2311 7 7 3.4702 0.1182 -1.9897 8 14 2.7136 1.8872 -3.9843 9 1 3.3860 3.2065 -4.0963 10 1 3.3590 0.9230 -4.9112 11 1 1.2789 2.0313 -4.3393 12 6 2.1743 2.1030 1.2652 13 6 3.5637 1.8783 1.8037 14 6 4.6245 2.6858 1.6215 15 8 5.6700 2.1231 2.2591 16 6 5.2363 0.9859 2.8302 17 6 6.0579 0.0554 3.6330 18 6 5.4855 -1.0972 4.1733 19 6 6.2589 -1.9642 4.9172 20 6 7.5964 -1.6873 5.1377 21 6 8.1687 -0.5439 4.6094 22 6 7.4077 0.3285 3.8589 23 7 3.9628 0.8378 2.5507 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8426 -0.3972 -2.7223 30 1 1.4421 1.7371 1.9849 31 1 2.0177 3.1686 1.0974 32 1 4.6368 3.6107 1.0640 33 1 4.4404 -1.3121 4.0057 34 1 5.8183 -2.8586 5.3322 35 1 8.1965 -2.3670 5.7245 36 1 9.2135 -0.3337 4.7848 37 1 7.8558 1.2206 3.4467 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118002023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:28 Heat of formation + Delta-G solvation = 48.906340 kcal Electronic energy + Delta-G solvation = -20241.992316 eV Core-core repulsion = 17178.836332 eV Total energy + Delta-G solvation = -3063.155984 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.08690 -39.92657 -37.96739 -35.69275 -33.74167 -33.15438 -31.94586 -31.52212 -29.79107 -27.59331 -25.37004 -24.69006 -23.72526 -22.66674 -22.03771 -21.26464 -18.81953 -18.47739 -17.54883 -17.33009 -16.79117 -16.47182 -15.99037 -15.76875 -15.59347 -15.04357 -14.61178 -14.43608 -14.35687 -14.08061 -13.85285 -13.27142 -13.23491 -12.73833 -12.69025 -12.45904 -12.35471 -12.20655 -12.05482 -11.92349 -11.81425 -11.49146 -11.42231 -10.54819 -10.51859 -9.94873 -9.11645 -8.67408 -7.84689 -5.43319 -0.26925 0.42032 0.96669 1.45794 1.49209 1.55400 1.80111 1.88896 2.51327 2.87223 3.04472 3.25518 3.78795 3.91483 4.02220 4.12688 4.15066 4.25398 4.48690 4.52242 4.57139 4.64412 4.79849 4.88655 4.91369 4.94467 5.03741 5.07310 5.10799 5.17928 5.34382 5.49155 5.49636 5.51135 5.56245 5.65168 5.86465 5.97215 6.42130 6.85961 7.12511 7.81510 8.35827 9.13031 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022259 B = 0.004760 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.616374 B = 5881.280864 C = 6130.802653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.265 4.265 5 H 0.072 0.928 6 C -0.040 4.040 7 N -0.920 5.920 8 Si 0.961 3.039 9 H -0.272 1.272 10 H -0.299 1.299 11 H -0.276 1.276 12 C 0.216 3.784 13 C -0.025 4.025 14 C -0.076 4.076 15 O -0.210 6.210 16 C 0.199 3.801 17 C -0.037 4.037 18 C -0.092 4.092 19 C -0.120 4.120 20 C -0.097 4.097 21 C -0.117 4.117 22 C -0.104 4.104 23 N -0.486 5.486 24 H 0.039 0.961 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.012 0.988 29 H 0.248 0.752 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.236 0.764 33 H 0.119 0.881 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.162 0.838 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.810 -0.835 13.698 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.395 4.395 5 H 0.089 0.911 6 C -0.237 4.237 7 N -0.564 5.564 8 Si 0.789 3.211 9 H -0.197 1.197 10 H -0.225 1.225 11 H -0.202 1.202 12 C 0.089 3.911 13 C -0.149 4.149 14 C -0.147 4.147 15 O -0.097 6.097 16 C -0.004 4.004 17 C -0.038 4.038 18 C -0.112 4.112 19 C -0.137 4.137 20 C -0.115 4.115 21 C -0.134 4.134 22 C -0.124 4.124 23 N -0.216 5.216 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.030 0.970 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.252 0.748 33 H 0.137 0.863 34 H 0.174 0.826 35 H 0.183 0.817 36 H 0.179 0.821 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.516 -1.417 13.765 15.295 hybrid contribution 0.276 0.817 -1.659 1.870 sum 6.792 -0.599 12.105 13.894 Atomic orbital electron populations 1.22082 0.97640 1.00233 1.00575 1.20829 0.92083 0.85891 0.99771 1.44218 1.73116 1.12153 1.00891 1.19420 1.35326 0.94571 0.90176 0.91067 1.25868 0.96900 0.98165 1.02734 1.70191 1.37584 1.17261 1.31404 0.85445 0.77960 0.77536 0.80136 1.19701 1.22533 1.20226 1.19561 0.86810 0.97476 0.87276 1.23439 1.02035 0.91044 0.98354 1.25267 0.84308 1.02818 1.02297 1.84377 1.39071 1.32869 1.53426 1.24423 0.89969 0.87278 0.98729 1.17591 0.93060 0.93729 0.99457 1.21261 1.00730 0.92651 0.96518 1.21438 0.94659 0.99588 0.98039 1.21792 0.94792 0.96981 0.97975 1.21454 1.01226 0.94038 0.96729 1.21408 0.91606 1.00785 0.98580 1.70439 1.10348 1.24854 1.16003 0.94154 0.92593 0.93259 0.91836 0.96985 0.94250 0.92085 0.89951 0.74755 0.86314 0.82582 0.81693 0.82069 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.02 10.24 71.98 0.74 -5.29 16 2 C 0.14 7.08 5.97 86.38 0.52 7.59 16 3 N -0.58 -29.60 2.44 -706.37 -1.72 -31.32 16 4 C -0.26 -14.24 9.49 84.03 0.80 -13.44 16 5 H 0.07 3.65 7.92 -2.91 -0.02 3.63 16 6 C -0.04 -2.20 4.93 84.86 0.42 -1.79 16 7 N -0.92 -55.43 11.32 21.65 0.25 -55.18 16 8 Si 0.96 44.50 29.61 68.60 2.03 46.53 16 9 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 10 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 C 0.22 9.37 6.22 85.63 0.53 9.91 16 13 C -0.03 -1.12 6.68 41.36 0.28 -0.84 16 14 C -0.08 -3.10 12.08 66.98 0.81 -2.29 16 15 O -0.21 -8.58 10.52 -8.46 -0.09 -8.67 16 16 C 0.20 8.27 7.90 87.32 0.69 8.96 16 17 C -0.04 -1.25 5.87 -20.10 -0.12 -1.37 16 18 C -0.09 -2.76 9.69 22.53 0.22 -2.54 16 19 C -0.12 -2.50 10.03 22.23 0.22 -2.28 16 20 C -0.10 -1.63 10.04 22.33 0.22 -1.40 16 21 C -0.12 -2.20 10.03 22.23 0.22 -1.97 16 22 C -0.10 -2.77 9.72 22.52 0.22 -2.56 16 23 N -0.49 -22.24 10.91 -293.17 -3.20 -25.44 16 24 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 25 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.06 3.67 5.32 -2.39 -0.01 3.66 16 28 H 0.01 0.61 8.10 -2.39 -0.02 0.59 16 29 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.06 2.51 8.07 -2.39 -0.02 2.49 16 31 H 0.08 3.18 8.04 -2.38 -0.02 3.16 16 32 H 0.24 7.79 8.06 -2.91 -0.02 7.77 16 33 H 0.12 3.89 7.83 -2.91 -0.02 3.86 16 34 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.13 3.29 7.90 -2.91 -0.02 3.27 16 Total: -1.00 -70.52 323.17 4.09 -66.43 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 1.06 Total: 16.96 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 5.77 Total: -9.31 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -4.68 Total: -111.95 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -0.09 Total: -8.67 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -70.52 4.09 -66.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118002023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.331 kcal (2) G-P(sol) polarization free energy of solvation -70.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds