Wall clock time and date at job start Mon Mar 30 2020 01:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47123 * 2 1 4 4 C 1.36942 * 119.99777 * 89.62667 * 3 2 1 5 5 H 1.07999 * 119.99833 * 34.05748 * 4 3 2 6 6 C 1.38809 * 120.00066 * 213.77439 * 4 3 2 7 7 N 1.31618 * 120.00046 * 23.13196 * 6 4 3 8 8 Si 1.86798 * 119.99915 * 203.13282 * 6 4 3 9 9 H 1.48498 * 109.47255 * 90.00242 * 8 6 4 10 10 H 1.48503 * 109.47033 * 210.00312 * 8 6 4 11 11 H 1.48495 * 109.47308 * 329.99720 * 8 6 4 12 12 C 1.46497 * 120.00173 * 269.62867 * 3 2 1 13 13 C 1.50699 * 109.47117 * 270.00122 * 12 3 2 14 14 N 1.30358 * 125.48559 * 89.69279 * 13 12 3 15 15 C 1.34133 * 108.90643 * 179.89664 * 14 13 12 16 16 C 1.35767 * 107.51470 * 0.36301 * 15 14 13 17 17 C 1.47834 * 126.58241 * 179.80029 * 16 15 14 18 18 C 1.39573 * 120.14343 * 359.72668 * 17 16 15 19 19 C 1.37958 * 119.85445 * 179.71939 * 18 17 16 20 20 C 1.38362 * 120.14090 * 0.53359 * 19 18 17 21 21 C 1.38358 * 120.29119 * 359.76579 * 20 19 18 22 22 C 1.37955 * 120.14817 * 359.95539 * 21 20 19 23 23 O 1.34000 * 125.48110 * 269.99994 * 13 12 3 24 24 H 1.09004 * 109.47403 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47314 * 300.00111 * 1 2 3 26 26 H 1.09007 * 109.46898 * 59.99547 * 1 2 3 27 27 H 1.08996 * 109.46959 * 239.99990 * 2 1 3 28 28 H 1.09004 * 109.46453 * 120.00185 * 2 1 3 29 29 H 0.96994 * 119.99924 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47232 * 30.00303 * 12 3 2 31 31 H 1.09002 * 109.46956 * 150.00173 * 12 3 2 32 32 H 1.08004 * 126.23994 * 180.14904 * 15 14 13 33 33 H 1.08007 * 120.07514 * 0.02562 * 18 17 16 34 34 H 1.07991 * 119.93307 * 180.27986 * 19 18 17 35 35 H 1.07998 * 119.84995 * 179.74010 * 20 19 18 36 36 H 1.08007 * 119.92281 * 179.97438 * 21 20 19 37 37 H 1.07997 * 120.07884 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2393 2.0292 1.1860 5 1 2.5941 1.4783 2.0444 6 6 2.0127 3.3953 1.2831 7 7 1.1877 3.9867 0.4453 8 14 2.8788 4.3941 2.6028 9 1 4.1717 4.8977 2.0739 10 1 2.0234 5.5428 2.9954 11 1 3.1295 3.5359 3.7885 12 6 2.2703 2.0690 -1.2686 13 6 3.6962 1.8313 -1.6945 14 7 4.1098 0.8410 -2.4344 15 6 5.4349 0.9535 -2.6098 16 6 5.8435 2.0601 -1.9377 17 6 7.2263 2.5750 -1.8465 18 6 8.2682 1.9027 -2.4873 19 6 9.5555 2.3917 -2.4030 20 6 9.8164 3.5397 -1.6760 21 6 8.7890 4.2074 -1.0334 22 6 7.4964 3.7322 -1.1144 23 8 4.7438 2.6007 -1.3686 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.0292 4.9412 0.5135 30 1 1.5941 1.6834 -2.0316 31 1 2.1025 3.1386 -1.1416 32 1 6.0627 0.2837 -3.1788 33 1 8.0664 1.0045 -3.0520 34 1 10.3619 1.8751 -2.9020 35 1 10.8265 3.9160 -1.6097 36 1 8.9995 5.1027 -0.4672 37 1 6.6953 4.2544 -0.6127 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120997500.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:31 Heat of formation + Delta-G solvation = 63.524231 kcal Electronic energy + Delta-G solvation = -20349.699897 eV Core-core repulsion = 17287.177791 eV Total energy + Delta-G solvation = -3062.522105 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.50227 -38.92138 -36.12528 -34.01453 -32.37329 -31.94025 -30.93732 -29.95479 -28.11486 -25.96912 -23.76324 -23.20747 -22.42360 -21.03015 -20.73165 -19.92763 -17.55729 -16.94618 -15.94378 -15.78564 -15.48818 -14.81722 -14.70720 -14.04232 -13.87120 -13.73600 -13.44869 -13.09677 -12.80124 -12.67238 -12.39616 -11.91998 -11.39722 -11.31113 -11.19328 -11.04356 -10.78883 -10.65393 -10.54905 -10.23481 -10.19758 -9.90041 -9.83442 -9.53181 -8.98186 -8.67724 -7.59860 -6.90096 -5.99709 -3.51592 0.90142 1.38471 2.41491 3.26370 3.33457 3.36018 3.38522 3.40680 3.91955 4.37834 4.78907 4.82482 4.92710 5.01751 5.16609 5.23859 5.41366 5.41651 5.47872 5.62429 5.85614 5.99099 6.09517 6.22036 6.29643 6.37252 6.44091 6.46443 6.52488 6.57895 6.66512 6.79363 6.91992 6.93380 6.96660 7.20420 7.31700 7.69074 8.28131 8.50902 8.95547 9.59790 10.14085 11.03136 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017922 B = 0.005985 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.975241 B = 4677.071383 C = 5885.777768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 N -0.565 5.565 4 C -0.265 4.265 5 H 0.067 0.933 6 C 0.016 3.984 7 N -0.881 5.881 8 Si 0.899 3.101 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.215 3.785 13 C 0.227 3.773 14 N -0.513 5.513 15 C -0.015 4.015 16 C -0.054 4.054 17 C 0.009 3.991 18 C -0.107 4.107 19 C -0.117 4.117 20 C -0.126 4.126 21 C -0.115 4.115 22 C -0.106 4.106 23 O -0.186 6.186 24 H 0.034 0.966 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.260 0.740 30 H 0.076 0.924 31 H 0.127 0.873 32 H 0.173 0.827 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.894 -1.809 -5.494 13.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.013 3.987 3 N -0.284 5.284 4 C -0.394 4.394 5 H 0.084 0.916 6 C -0.185 4.185 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.210 1.210 10 H -0.215 1.215 11 H -0.201 1.201 12 C 0.085 3.915 13 C 0.019 3.981 14 N -0.242 5.242 15 C -0.156 4.156 16 C -0.108 4.108 17 C 0.008 3.992 18 C -0.126 4.126 19 C -0.135 4.135 20 C -0.144 4.144 21 C -0.133 4.133 22 C -0.124 4.124 23 O -0.072 6.072 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.144 0.856 32 H 0.191 0.809 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.362 -2.084 -5.656 12.862 hybrid contribution 1.042 1.001 0.925 1.716 sum 12.404 -1.083 -4.731 13.320 Atomic orbital electron populations 1.22220 0.98891 0.98766 1.02081 1.20975 0.92369 0.86237 0.99078 1.43857 1.72223 1.10760 1.01537 1.19144 1.38969 0.91433 0.89831 0.91557 1.25101 0.96764 0.98345 0.98288 1.69906 1.32552 1.10723 1.39144 0.86342 0.79617 0.79790 0.81462 1.20971 1.21452 1.20106 1.19940 0.79623 1.04120 0.87803 1.29517 0.93351 0.84823 0.90372 1.70424 1.10367 1.23885 1.19530 1.23174 0.92186 0.97609 1.02621 1.21278 0.87408 0.98422 1.03676 1.17701 0.87692 0.95320 0.98459 1.21010 0.91856 0.99881 0.99807 1.20984 0.96167 0.96702 0.99620 1.21197 0.99068 0.96017 0.98119 1.21087 0.92516 1.00066 0.99645 1.21380 0.97427 0.95538 0.98082 1.84597 1.15591 1.48383 1.58624 0.94674 0.92517 0.93550 0.93755 0.93761 0.93020 0.90555 0.85644 0.80945 0.85575 0.85693 0.86062 0.85780 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 10.24 37.16 0.38 -2.74 16 2 C 0.14 2.96 6.39 -4.04 -0.03 2.94 16 3 N -0.56 -13.89 2.44 -174.62 -0.43 -14.31 16 4 C -0.26 -7.08 9.49 -15.06 -0.14 -7.22 16 5 H 0.07 1.79 7.93 -52.49 -0.42 1.38 16 6 C 0.02 0.42 4.95 -17.43 -0.09 0.34 16 7 N -0.88 -24.09 11.31 55.49 0.63 -23.46 16 8 Si 0.90 21.26 29.61 -169.99 -5.03 16.23 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.22 5.07 5.91 -5.20 -0.03 5.04 16 13 C 0.23 5.19 7.91 -12.90 -0.10 5.09 16 14 N -0.51 -10.97 11.27 -10.82 -0.12 -11.09 16 15 C -0.02 -0.28 11.29 -17.43 -0.20 -0.48 16 16 C -0.05 -1.04 7.07 -36.54 -0.26 -1.30 16 17 C 0.01 0.15 5.87 -104.98 -0.62 -0.47 16 18 C -0.11 -1.39 9.57 -39.19 -0.38 -1.77 16 19 C -0.12 -1.28 10.03 -39.64 -0.40 -1.67 16 20 C -0.13 -1.38 10.04 -39.49 -0.40 -1.77 16 21 C -0.12 -1.45 10.03 -39.64 -0.40 -1.85 16 22 C -0.11 -1.67 9.73 -39.19 -0.38 -2.05 16 23 O -0.19 -4.26 10.59 4.23 0.04 -4.21 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 28 H 0.04 0.93 8.04 -51.93 -0.42 0.51 16 29 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.08 1.67 8.07 -51.93 -0.42 1.25 16 31 H 0.13 3.25 5.31 -51.93 -0.28 2.97 16 32 H 0.17 2.48 7.30 -52.48 -0.38 2.10 16 33 H 0.13 1.37 7.04 -52.48 -0.37 1.00 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 37 H 0.13 2.18 7.95 -52.49 -0.42 1.76 16 LS Contribution 321.69 15.07 4.85 4.85 Total: -1.00 -29.44 321.69 -7.88 -37.32 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.79 Total: 2.60 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -3.03 Total: -7.91 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.08 Total: -48.87 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: 0.04 Total: -4.21 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.44 -7.88 -37.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120997500.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.844 kcal (2) G-P(sol) polarization free energy of solvation -29.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds