Wall clock time and date at job start Mon Mar 30 2020 01:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47123 * 2 1 4 4 C 1.36942 * 119.99777 * 89.62667 * 3 2 1 5 5 H 1.07999 * 119.99833 * 34.05748 * 4 3 2 6 6 C 1.38809 * 120.00066 * 213.77439 * 4 3 2 7 7 N 1.31618 * 120.00046 * 23.13196 * 6 4 3 8 8 Si 1.86798 * 119.99915 * 203.13282 * 6 4 3 9 9 H 1.48498 * 109.47255 * 90.00242 * 8 6 4 10 10 H 1.48503 * 109.47033 * 210.00312 * 8 6 4 11 11 H 1.48495 * 109.47308 * 329.99720 * 8 6 4 12 12 C 1.46497 * 120.00173 * 269.62867 * 3 2 1 13 13 C 1.50699 * 109.47117 * 270.00122 * 12 3 2 14 14 N 1.30358 * 125.48559 * 89.69279 * 13 12 3 15 15 C 1.34133 * 108.90643 * 179.89664 * 14 13 12 16 16 C 1.35767 * 107.51470 * 0.36301 * 15 14 13 17 17 C 1.47834 * 126.58241 * 179.80029 * 16 15 14 18 18 C 1.39573 * 120.14343 * 359.72668 * 17 16 15 19 19 C 1.37958 * 119.85445 * 179.71939 * 18 17 16 20 20 C 1.38362 * 120.14090 * 0.53359 * 19 18 17 21 21 C 1.38358 * 120.29119 * 359.76579 * 20 19 18 22 22 C 1.37955 * 120.14817 * 359.95539 * 21 20 19 23 23 O 1.34000 * 125.48110 * 269.99994 * 13 12 3 24 24 H 1.09004 * 109.47403 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47314 * 300.00111 * 1 2 3 26 26 H 1.09007 * 109.46898 * 59.99547 * 1 2 3 27 27 H 1.08996 * 109.46959 * 239.99990 * 2 1 3 28 28 H 1.09004 * 109.46453 * 120.00185 * 2 1 3 29 29 H 0.96994 * 119.99924 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47232 * 30.00303 * 12 3 2 31 31 H 1.09002 * 109.46956 * 150.00173 * 12 3 2 32 32 H 1.08004 * 126.23994 * 180.14904 * 15 14 13 33 33 H 1.08007 * 120.07514 * 0.02562 * 18 17 16 34 34 H 1.07991 * 119.93307 * 180.27986 * 19 18 17 35 35 H 1.07998 * 119.84995 * 179.74010 * 20 19 18 36 36 H 1.08007 * 119.92281 * 179.97438 * 21 20 19 37 37 H 1.07997 * 120.07884 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2393 2.0292 1.1860 5 1 2.5941 1.4783 2.0444 6 6 2.0127 3.3953 1.2831 7 7 1.1877 3.9867 0.4453 8 14 2.8788 4.3941 2.6028 9 1 4.1717 4.8977 2.0739 10 1 2.0234 5.5428 2.9954 11 1 3.1295 3.5359 3.7885 12 6 2.2703 2.0690 -1.2686 13 6 3.6962 1.8313 -1.6945 14 7 4.1098 0.8410 -2.4344 15 6 5.4349 0.9535 -2.6098 16 6 5.8435 2.0601 -1.9377 17 6 7.2263 2.5750 -1.8465 18 6 8.2682 1.9027 -2.4873 19 6 9.5555 2.3917 -2.4030 20 6 9.8164 3.5397 -1.6760 21 6 8.7890 4.2074 -1.0334 22 6 7.4964 3.7322 -1.1144 23 8 4.7438 2.6007 -1.3686 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.0292 4.9412 0.5135 30 1 1.5941 1.6834 -2.0316 31 1 2.1025 3.1386 -1.1416 32 1 6.0627 0.2837 -3.1788 33 1 8.0664 1.0045 -3.0520 34 1 10.3619 1.8751 -2.9020 35 1 10.8265 3.9160 -1.6097 36 1 8.9995 5.1027 -0.4672 37 1 6.6953 4.2544 -0.6127 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120997500.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:31 Heat of formation + Delta-G solvation = 46.159130 kcal Electronic energy + Delta-G solvation = -20350.452904 eV Core-core repulsion = 17287.177791 eV Total energy + Delta-G solvation = -3063.275112 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.11720 -39.94257 -37.97268 -35.65382 -33.90190 -33.61308 -31.93140 -31.56382 -29.76522 -27.64458 -25.58468 -24.43959 -23.67025 -22.50603 -22.21297 -21.61996 -19.12283 -18.53828 -17.55832 -17.22689 -16.82164 -16.50872 -15.95453 -15.77957 -15.66887 -14.92080 -14.85224 -14.37598 -14.17535 -14.03216 -13.84942 -13.59718 -13.25394 -12.99417 -12.59812 -12.46096 -12.37954 -12.29073 -12.17339 -12.04181 -12.01426 -11.60195 -11.48094 -10.76090 -10.68404 -9.96924 -8.96396 -8.85418 -8.01305 -5.56796 -0.30332 0.39806 1.00752 1.38528 1.43114 1.49397 1.77814 1.83148 2.42278 2.86196 3.06593 3.38051 3.62658 3.63340 3.94685 4.00392 4.07736 4.24574 4.41030 4.43839 4.46948 4.63274 4.71814 4.78894 4.82899 4.97508 5.00577 5.05811 5.09931 5.22449 5.27471 5.45536 5.47051 5.51429 5.53410 5.56615 5.64836 5.97415 6.30664 6.86931 6.96760 7.64322 8.16312 8.99272 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017922 B = 0.005985 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.975241 B = 4677.071383 C = 5885.777768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.137 3.863 3 N -0.580 5.580 4 C -0.276 4.276 5 H 0.057 0.943 6 C -0.023 4.023 7 N -0.904 5.904 8 Si 0.949 3.051 9 H -0.290 1.290 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.224 3.776 13 C 0.197 3.803 14 N -0.513 5.513 15 C -0.024 4.024 16 C -0.051 4.051 17 C -0.029 4.029 18 C -0.102 4.102 19 C -0.109 4.109 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.132 4.132 23 O -0.215 6.215 24 H 0.070 0.930 25 H 0.033 0.967 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.258 0.742 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.216 0.784 33 H 0.149 0.851 34 H 0.167 0.833 35 H 0.160 0.840 36 H 0.143 0.857 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.080 -2.761 -6.362 16.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.012 3.988 3 N -0.300 5.300 4 C -0.405 4.405 5 H 0.075 0.925 6 C -0.222 4.222 7 N -0.547 5.547 8 Si 0.777 3.223 9 H -0.217 1.217 10 H -0.209 1.209 11 H -0.194 1.194 12 C 0.094 3.906 13 C -0.011 4.011 14 N -0.243 5.243 15 C -0.164 4.164 16 C -0.105 4.105 17 C -0.030 4.030 18 C -0.120 4.120 19 C -0.127 4.127 20 C -0.129 4.129 21 C -0.138 4.138 22 C -0.151 4.151 23 O -0.102 6.102 24 H 0.089 0.911 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.233 0.767 33 H 0.167 0.833 34 H 0.184 0.816 35 H 0.178 0.822 36 H 0.161 0.839 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.552 -3.048 -6.526 16.237 hybrid contribution 0.293 1.291 1.113 1.729 sum 14.845 -1.757 -5.413 15.898 Atomic orbital electron populations 1.22070 0.97384 1.00613 1.00604 1.21071 0.93522 0.84767 0.99397 1.44015 1.73139 1.11694 1.01166 1.19238 1.38860 0.91939 0.90511 0.92545 1.25665 0.97338 0.99023 1.00150 1.69997 1.33581 1.10651 1.40457 0.85550 0.78279 0.78719 0.79730 1.21718 1.20912 1.19401 1.19602 0.80697 1.02490 0.87777 1.29034 0.93241 0.86085 0.92699 1.70360 1.12036 1.23063 1.18793 1.23772 0.91352 0.98151 1.03086 1.22080 0.87827 0.98246 1.02299 1.17913 0.86940 0.96821 1.01324 1.21346 0.91751 1.00126 0.98760 1.21500 0.96169 0.96391 0.98632 1.21706 1.00169 0.95162 0.95817 1.21349 0.91545 1.00907 1.00016 1.21345 0.98345 0.96176 0.99222 1.84550 1.16817 1.49343 1.59442 0.91087 0.94765 0.94125 0.92881 0.93824 0.93217 0.89660 0.88309 0.76703 0.83336 0.81598 0.82205 0.83933 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.72 10.24 71.98 0.74 -4.98 16 2 C 0.14 5.90 6.39 86.38 0.55 6.45 16 3 N -0.58 -29.46 2.44 -706.37 -1.72 -31.18 16 4 C -0.28 -15.27 9.49 84.03 0.80 -14.47 16 5 H 0.06 3.16 7.93 -2.91 -0.02 3.14 16 6 C -0.02 -1.27 4.95 84.86 0.42 -0.85 16 7 N -0.90 -51.32 11.31 21.65 0.24 -51.08 16 8 Si 0.95 45.00 29.61 68.60 2.03 47.03 16 9 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 C 0.22 11.03 5.91 85.63 0.51 11.53 16 13 C 0.20 9.33 7.91 88.33 0.70 10.03 16 14 N -0.51 -21.99 11.27 -302.87 -3.41 -25.40 16 15 C -0.02 -0.86 11.29 83.77 0.95 0.09 16 16 C -0.05 -2.02 7.07 24.24 0.17 -1.85 16 17 C -0.03 -0.94 5.87 -20.09 -0.12 -1.06 16 18 C -0.10 -2.31 9.57 22.53 0.22 -2.10 16 19 C -0.11 -1.85 10.03 22.23 0.22 -1.63 16 20 C -0.11 -1.92 10.04 22.33 0.22 -1.70 16 21 C -0.12 -2.79 10.03 22.23 0.22 -2.57 16 22 C -0.13 -4.21 9.73 22.52 0.22 -3.99 16 23 O -0.21 -10.32 10.59 -7.79 -0.08 -10.40 16 24 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.05 2.16 8.07 -2.39 -0.02 2.14 16 28 H 0.04 1.85 8.04 -2.38 -0.02 1.83 16 29 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 30 H 0.09 3.89 8.07 -2.39 -0.02 3.87 16 31 H 0.10 5.42 5.31 -2.39 -0.01 5.41 16 32 H 0.22 5.54 7.30 -2.91 -0.02 5.52 16 33 H 0.15 2.61 7.04 -2.91 -0.02 2.59 16 34 H 0.17 1.52 8.06 -2.92 -0.02 1.50 16 35 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 37 H 0.10 3.60 7.95 -2.91 -0.02 3.58 16 Total: -1.00 -66.98 321.69 3.94 -63.05 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 1.06 Total: 15.08 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 5.82 Total: -7.09 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -4.89 Total: -107.66 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -0.08 Total: -10.40 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -66.98 3.94 -63.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120997500.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.205 kcal (2) G-P(sol) polarization free energy of solvation -66.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds