Wall clock time and date at job start Mon Mar 30 2020 01:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47254 * 2 1 4 4 C 1.37096 * 120.00283 * 264.77248 * 3 2 1 5 5 H 1.07999 * 119.99811 * 138.85352 * 4 3 2 6 6 C 1.38947 * 120.00197 * 318.85155 * 4 3 2 7 7 N 1.31420 * 119.99619 * 341.83073 * 6 4 3 8 8 Si 1.86799 * 120.00153 * 161.82802 * 6 4 3 9 9 H 1.48491 * 109.47277 * 90.00391 * 8 6 4 10 10 H 1.48507 * 109.46713 * 210.00224 * 8 6 4 11 11 H 1.48499 * 109.46985 * 329.99742 * 8 6 4 12 12 C 1.34780 * 119.99756 * 84.77208 * 3 2 1 13 13 O 1.21296 * 120.00265 * 180.02562 * 12 3 2 14 14 C 1.50699 * 119.99963 * 359.97438 * 12 3 2 15 15 N 1.46505 * 109.47071 * 180.02562 * 14 12 3 16 16 C 1.36827 * 125.06230 * 265.30317 * 15 14 12 17 17 C 1.34241 * 109.92572 * 180.14591 * 16 15 14 18 18 C 1.46479 * 106.99780 * 359.60595 * 17 16 15 19 19 C 1.39632 * 134.02692 * 180.21645 * 18 17 16 20 20 C 1.36626 * 119.76492 * 179.97438 * 19 18 17 21 21 C 1.38828 * 120.52438 * 0.03435 * 20 19 18 22 22 C 1.37748 * 120.66872 * 359.97438 * 21 20 19 23 23 C 1.37680 * 125.06081 * 85.00088 * 15 14 12 24 24 H 1.08999 * 109.46942 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46445 * 299.99512 * 1 2 3 26 26 H 1.08994 * 109.47247 * 59.99528 * 1 2 3 27 27 H 1.09003 * 109.46967 * 240.00538 * 2 1 3 28 28 H 1.08994 * 109.47247 * 120.00472 * 2 1 3 29 29 H 0.96998 * 119.99782 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46758 * 60.00431 * 14 12 3 31 31 H 1.09004 * 109.47392 * 299.99950 * 14 12 3 32 32 H 1.07999 * 125.03939 * 0.02688 * 16 15 14 33 33 H 1.08002 * 126.49534 * 179.86734 * 17 16 15 34 34 H 1.08002 * 120.11684 * 0.02562 * 19 18 17 35 35 H 1.08001 * 119.73571 * 180.02562 * 20 19 18 36 36 H 1.07999 * 119.66522 * 180.02562 * 21 20 19 37 37 H 1.08005 * 120.10853 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3489 1.9914 -1.1823 5 1 2.0743 3.0218 -1.3533 6 6 3.0371 1.2843 -2.1605 7 7 3.6791 0.1818 -1.8452 8 14 3.0498 1.9007 -3.9239 9 1 4.2054 2.8121 -4.1214 10 1 3.1657 0.7463 -4.8509 11 1 1.7883 2.6334 -4.2012 12 6 2.1427 2.0519 1.1624 13 8 2.5466 3.1957 1.1625 14 6 1.7789 1.3813 2.4620 15 7 2.0001 2.3128 3.5709 16 6 3.1383 2.3782 4.3274 17 6 3.0137 3.3359 5.2597 18 6 1.6909 3.9390 5.0799 19 6 0.9958 4.9637 5.7251 20 6 -0.2605 5.2997 5.3059 21 6 -0.8520 4.6297 4.2436 22 6 -0.1842 3.6157 3.5930 23 6 1.0959 3.2568 4.0032 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 4.1592 -0.3121 -2.5281 30 1 2.4003 0.4966 2.6007 31 1 0.7293 1.0881 2.4382 32 1 4.0075 1.7508 4.1954 33 1 3.7507 3.6124 5.9991 34 1 1.4498 5.4895 6.5521 35 1 -0.7976 6.0926 5.8051 36 1 -1.8455 4.9069 3.9235 37 1 -0.6532 3.1002 2.7679 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124143214.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:11 Heat of formation + Delta-G solvation = 36.372956 kcal Electronic energy + Delta-G solvation = -20694.642908 eV Core-core repulsion = 17630.943436 eV Total energy + Delta-G solvation = -3063.699473 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.97864 -38.56605 -36.62597 -35.04563 -32.64395 -31.95984 -30.05905 -29.57357 -28.54732 -26.88425 -24.58598 -22.52446 -22.24868 -21.23683 -20.25462 -18.99818 -17.00813 -16.63077 -16.15597 -16.11453 -15.15996 -15.09752 -14.42130 -14.17775 -13.78442 -13.46126 -13.42992 -13.05006 -12.73683 -12.66850 -12.30312 -12.08975 -11.86097 -11.43211 -11.32147 -11.23896 -11.11682 -11.02289 -10.54437 -10.48852 -10.41799 -10.23132 -9.37873 -9.02550 -8.59958 -7.78947 -7.54569 -7.26861 -6.42048 -4.10846 1.47481 1.98474 3.00465 3.12051 3.21102 3.24564 3.27585 3.71469 4.08493 4.26705 4.72189 4.90450 5.00403 5.12485 5.21242 5.30235 5.39887 5.47843 5.56134 5.73653 5.79389 5.82377 6.00278 6.05893 6.09674 6.16921 6.25367 6.35029 6.38059 6.73500 6.77595 6.89718 7.07043 7.11492 7.16895 7.49564 7.60239 7.64626 8.18456 8.39809 9.07944 9.25782 9.86225 10.62912 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026399 B = 0.004929 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.376017 B = 5678.844854 C = 5759.359050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.099 3.901 3 N -0.436 5.436 4 C -0.309 4.309 5 H 0.088 0.912 6 C 0.040 3.960 7 N -0.871 5.871 8 Si 0.919 3.081 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.441 3.559 13 O -0.560 6.560 14 C 0.090 3.910 15 N -0.457 5.457 16 C 0.070 3.930 17 C -0.218 4.218 18 C -0.110 4.110 19 C -0.076 4.076 20 C -0.154 4.154 21 C -0.109 4.109 22 C -0.119 4.119 23 C 0.113 3.887 24 H 0.053 0.947 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.047 0.953 29 H 0.269 0.731 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.164 0.836 33 H 0.143 0.857 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.101 -0.541 10.364 12.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.025 4.025 3 N -0.157 5.157 4 C -0.437 4.437 5 H 0.106 0.894 6 C -0.164 4.164 7 N -0.509 5.509 8 Si 0.746 3.254 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.193 1.193 12 C 0.227 3.773 13 O -0.441 6.441 14 C -0.036 4.036 15 N -0.138 5.138 16 C -0.057 4.057 17 C -0.243 4.243 18 C -0.114 4.114 19 C -0.095 4.095 20 C -0.174 4.174 21 C -0.128 4.128 22 C -0.139 4.139 23 C 0.006 3.994 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.125 0.875 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.117 0.883 32 H 0.181 0.819 33 H 0.160 0.840 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.802 -0.372 9.977 11.548 hybrid contribution 0.186 -0.017 -1.083 1.099 sum -5.616 -0.389 8.894 10.526 Atomic orbital electron populations 1.22238 0.98004 1.00617 1.01600 1.21524 0.91770 0.85530 1.03649 1.43454 1.55963 1.11715 1.04553 1.19366 1.35106 0.98645 0.90577 0.89428 1.25434 0.93844 0.96467 1.00688 1.69914 1.29279 1.17483 1.34182 0.86052 0.79105 0.78398 0.81886 1.20186 1.20726 1.19317 1.20586 0.83301 0.88638 0.84803 1.90601 1.49162 1.18182 1.86200 1.21828 1.03599 0.91969 0.86167 1.43569 1.13196 1.29995 1.27026 1.21772 0.90118 1.00841 0.92939 1.21511 0.97045 1.01418 1.04354 1.19178 0.95393 0.98825 0.98039 1.20164 0.94262 0.95935 0.99145 1.20503 0.95995 1.01700 0.99162 1.20686 0.99520 0.96100 0.96512 1.20030 0.92640 1.00050 1.01188 1.18186 0.92332 0.92452 0.96416 0.92778 0.94092 0.92121 0.87499 0.93475 0.92141 0.87525 0.88318 0.81881 0.83959 0.86592 0.86618 0.86280 0.86792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 10.15 37.16 0.38 -2.39 16 2 C 0.10 2.01 5.41 -4.04 -0.02 1.99 16 3 N -0.44 -10.64 2.50 -114.82 -0.29 -10.93 16 4 C -0.31 -8.40 8.84 -14.93 -0.13 -8.54 16 5 H 0.09 2.52 7.82 -52.49 -0.41 2.11 16 6 C 0.04 1.05 4.95 -17.47 -0.09 0.96 16 7 N -0.87 -22.87 11.61 55.50 0.64 -22.23 16 8 Si 0.92 20.30 29.59 -169.99 -5.03 15.27 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 12 C 0.44 10.56 7.66 -10.98 -0.08 10.47 16 13 O -0.56 -15.93 16.33 5.54 0.09 -15.83 16 14 C 0.09 1.64 5.09 -5.19 -0.03 1.62 16 15 N -0.46 -8.53 2.27 -115.71 -0.26 -8.79 16 16 C 0.07 1.17 11.28 -16.73 -0.19 0.98 16 17 C -0.22 -3.52 11.08 -37.67 -0.42 -3.94 16 18 C -0.11 -1.92 6.37 -105.14 -0.67 -2.59 16 19 C -0.08 -1.15 10.05 -39.64 -0.40 -1.55 16 20 C -0.15 -2.17 9.97 -39.95 -0.40 -2.57 16 21 C -0.11 -1.61 10.01 -39.54 -0.40 -2.01 16 22 C -0.12 -2.05 10.00 -39.43 -0.39 -2.45 16 23 C 0.11 2.13 6.80 -83.99 -0.57 1.56 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.63 6.59 -51.93 -0.34 0.29 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.11 2.41 5.76 -51.93 -0.30 2.11 16 28 H 0.05 0.84 6.66 -51.93 -0.35 0.50 16 29 H 0.27 6.65 8.31 -40.82 -0.34 6.32 16 30 H 0.11 1.70 7.39 -51.93 -0.38 1.31 16 31 H 0.10 1.59 6.54 -51.93 -0.34 1.25 16 32 H 0.16 2.27 8.06 -52.49 -0.42 1.85 16 33 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.11 1.89 8.06 -52.48 -0.42 1.46 16 LS Contribution 314.98 15.07 4.75 4.75 Total: -1.00 -32.48 314.98 -8.14 -40.63 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -4.64 Total: 5.59 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -3.41 Total: -8.46 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.09 Total: -41.95 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.09 Total: -15.83 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.48 -8.14 -40.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124143214.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.002 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds