Wall clock time and date at job start Mon Mar 30 2020 01:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47254 * 2 1 4 4 C 1.37096 * 120.00283 * 264.77248 * 3 2 1 5 5 H 1.07999 * 119.99811 * 138.85352 * 4 3 2 6 6 C 1.38947 * 120.00197 * 318.85155 * 4 3 2 7 7 N 1.31420 * 119.99619 * 341.83073 * 6 4 3 8 8 Si 1.86799 * 120.00153 * 161.82802 * 6 4 3 9 9 H 1.48491 * 109.47277 * 90.00391 * 8 6 4 10 10 H 1.48507 * 109.46713 * 210.00224 * 8 6 4 11 11 H 1.48499 * 109.46985 * 329.99742 * 8 6 4 12 12 C 1.34780 * 119.99756 * 84.77208 * 3 2 1 13 13 O 1.21296 * 120.00265 * 180.02562 * 12 3 2 14 14 C 1.50699 * 119.99963 * 359.97438 * 12 3 2 15 15 N 1.46505 * 109.47071 * 180.02562 * 14 12 3 16 16 C 1.36827 * 125.06230 * 265.30317 * 15 14 12 17 17 C 1.34241 * 109.92572 * 180.14591 * 16 15 14 18 18 C 1.46479 * 106.99780 * 359.60595 * 17 16 15 19 19 C 1.39632 * 134.02692 * 180.21645 * 18 17 16 20 20 C 1.36626 * 119.76492 * 179.97438 * 19 18 17 21 21 C 1.38828 * 120.52438 * 0.03435 * 20 19 18 22 22 C 1.37748 * 120.66872 * 359.97438 * 21 20 19 23 23 C 1.37680 * 125.06081 * 85.00088 * 15 14 12 24 24 H 1.08999 * 109.46942 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46445 * 299.99512 * 1 2 3 26 26 H 1.08994 * 109.47247 * 59.99528 * 1 2 3 27 27 H 1.09003 * 109.46967 * 240.00538 * 2 1 3 28 28 H 1.08994 * 109.47247 * 120.00472 * 2 1 3 29 29 H 0.96998 * 119.99782 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46758 * 60.00431 * 14 12 3 31 31 H 1.09004 * 109.47392 * 299.99950 * 14 12 3 32 32 H 1.07999 * 125.03939 * 0.02688 * 16 15 14 33 33 H 1.08002 * 126.49534 * 179.86734 * 17 16 15 34 34 H 1.08002 * 120.11684 * 0.02562 * 19 18 17 35 35 H 1.08001 * 119.73571 * 180.02562 * 20 19 18 36 36 H 1.07999 * 119.66522 * 180.02562 * 21 20 19 37 37 H 1.08005 * 120.10853 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3489 1.9914 -1.1823 5 1 2.0743 3.0218 -1.3533 6 6 3.0371 1.2843 -2.1605 7 7 3.6791 0.1818 -1.8452 8 14 3.0498 1.9007 -3.9239 9 1 4.2054 2.8121 -4.1214 10 1 3.1657 0.7463 -4.8509 11 1 1.7883 2.6334 -4.2012 12 6 2.1427 2.0519 1.1624 13 8 2.5466 3.1957 1.1625 14 6 1.7789 1.3813 2.4620 15 7 2.0001 2.3128 3.5709 16 6 3.1383 2.3782 4.3274 17 6 3.0137 3.3359 5.2597 18 6 1.6909 3.9390 5.0799 19 6 0.9958 4.9637 5.7251 20 6 -0.2605 5.2997 5.3059 21 6 -0.8520 4.6297 4.2436 22 6 -0.1842 3.6157 3.5930 23 6 1.0959 3.2568 4.0032 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 4.1592 -0.3121 -2.5281 30 1 2.4003 0.4966 2.6007 31 1 0.7293 1.0881 2.4382 32 1 4.0075 1.7508 4.1954 33 1 3.7507 3.6124 5.9991 34 1 1.4498 5.4895 6.5521 35 1 -0.7976 6.0926 5.8051 36 1 -1.8455 4.9069 3.9235 37 1 -0.6532 3.1002 2.7679 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124143214.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:10 Heat of formation + Delta-G solvation = 18.506049 kcal Electronic energy + Delta-G solvation = -20695.417676 eV Core-core repulsion = 17630.943436 eV Total energy + Delta-G solvation = -3064.474240 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.25682 -40.33783 -37.86129 -36.91070 -34.30796 -33.55203 -31.34742 -31.20512 -29.75618 -28.41472 -26.37874 -24.04668 -23.53332 -22.47713 -21.69355 -20.55439 -18.85941 -18.13529 -17.79501 -17.37832 -16.95801 -16.27700 -16.05884 -15.86559 -15.24950 -14.81868 -14.75397 -14.57718 -14.23339 -13.98357 -13.72572 -13.58979 -13.43349 -12.99869 -12.91367 -12.73185 -12.49177 -12.42631 -12.30241 -12.10972 -11.86030 -11.70640 -10.95419 -10.73990 -10.36936 -9.47526 -9.04146 -8.54814 -8.38249 -6.16739 0.26635 0.76761 1.33859 1.38375 1.49919 1.72642 1.91567 1.99409 2.27220 2.94752 2.97323 3.09433 3.75453 3.82865 3.90647 3.99609 4.04070 4.19968 4.31761 4.33616 4.56130 4.58994 4.63472 4.77118 4.82244 4.96300 4.99747 5.08353 5.20491 5.26240 5.40027 5.49304 5.60474 5.72690 5.92365 5.97683 6.15788 6.34788 6.38016 6.52183 7.12117 7.36108 7.96661 8.63320 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026399 B = 0.004929 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.376017 B = 5678.844854 C = 5759.359050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.097 3.903 3 N -0.446 5.446 4 C -0.343 4.343 5 H 0.056 0.944 6 C 0.010 3.990 7 N -0.887 5.887 8 Si 0.979 3.021 9 H -0.281 1.281 10 H -0.264 1.264 11 H -0.268 1.268 12 C 0.430 3.570 13 O -0.618 6.618 14 C 0.105 3.895 15 N -0.471 5.471 16 C 0.046 3.954 17 C -0.217 4.217 18 C -0.137 4.137 19 C -0.081 4.081 20 C -0.153 4.153 21 C -0.106 4.106 22 C -0.149 4.149 23 C 0.080 3.920 24 H 0.089 0.911 25 H 0.052 0.948 26 H 0.041 0.959 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.275 0.725 30 H 0.132 0.868 31 H 0.121 0.879 32 H 0.185 0.815 33 H 0.171 0.829 34 H 0.144 0.856 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.961 -0.883 11.419 13.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.026 4.026 3 N -0.166 5.166 4 C -0.471 4.471 5 H 0.074 0.926 6 C -0.194 4.194 7 N -0.524 5.524 8 Si 0.802 3.198 9 H -0.207 1.207 10 H -0.188 1.188 11 H -0.192 1.192 12 C 0.218 3.782 13 O -0.504 6.504 14 C -0.020 4.020 15 N -0.153 5.153 16 C -0.079 4.079 17 C -0.241 4.241 18 C -0.142 4.142 19 C -0.100 4.100 20 C -0.172 4.172 21 C -0.125 4.125 22 C -0.169 4.169 23 C -0.026 4.026 24 H 0.108 0.892 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.150 0.850 31 H 0.138 0.862 32 H 0.202 0.798 33 H 0.188 0.812 34 H 0.162 0.838 35 H 0.170 0.830 36 H 0.165 0.835 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.676 -0.758 11.046 12.929 hybrid contribution 0.438 0.151 -1.357 1.434 sum -6.238 -0.607 9.689 11.539 Atomic orbital electron populations 1.22134 0.95137 1.02827 1.01292 1.21672 0.94106 0.83176 1.03648 1.43731 1.55712 1.13062 1.04097 1.19262 1.36982 0.98063 0.92785 0.92614 1.26100 0.92957 0.96526 1.03781 1.69963 1.29079 1.17937 1.35406 0.85172 0.78681 0.78285 0.77628 1.20681 1.18796 1.19221 1.21502 0.82129 0.88063 0.86487 1.90547 1.51690 1.20754 1.87359 1.21701 1.05257 0.91937 0.83153 1.43688 1.13918 1.30494 1.27172 1.22287 0.90481 1.01898 0.93232 1.21927 0.97091 1.00625 1.04495 1.19652 0.96259 0.99812 0.98436 1.20593 0.94626 0.95191 0.99547 1.20962 0.95779 1.01911 0.98549 1.21114 1.00491 0.94804 0.96049 1.20260 0.92923 1.01637 1.02107 1.18640 0.93177 0.93305 0.97506 0.89205 0.92884 0.93962 0.89870 0.90965 0.91549 0.85002 0.86167 0.79838 0.81208 0.83804 0.83018 0.83532 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.96 10.15 71.98 0.73 -4.23 16 2 C 0.10 3.87 5.41 86.38 0.47 4.34 16 3 N -0.45 -22.25 2.50 -635.55 -1.59 -23.84 16 4 C -0.34 -19.33 8.84 84.04 0.74 -18.58 16 5 H 0.06 3.42 7.82 -2.91 -0.02 3.40 16 6 C 0.01 0.51 4.95 84.92 0.42 0.93 16 7 N -0.89 -46.72 11.61 21.66 0.25 -46.47 16 8 Si 0.98 42.05 29.59 68.60 2.03 44.08 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 12 C 0.43 21.13 7.66 87.66 0.67 21.81 16 13 O -0.62 -36.75 16.33 -3.08 -0.05 -36.80 16 14 C 0.10 3.79 5.09 85.63 0.44 4.23 16 15 N -0.47 -17.59 2.27 -519.99 -1.18 -18.77 16 16 C 0.05 1.52 11.28 83.00 0.94 2.46 16 17 C -0.22 -6.79 11.08 23.51 0.26 -6.53 16 18 C -0.14 -4.70 6.37 -20.20 -0.13 -4.83 16 19 C -0.08 -2.28 10.05 22.23 0.22 -2.06 16 20 C -0.15 -3.90 9.97 22.03 0.22 -3.68 16 21 C -0.11 -2.96 10.01 22.30 0.22 -2.74 16 22 C -0.15 -5.15 10.00 22.37 0.22 -4.92 16 23 C 0.08 3.02 6.80 39.03 0.27 3.28 16 24 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.05 1.55 6.59 -2.39 -0.02 1.53 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 3.75 5.76 -2.39 -0.01 3.73 16 28 H 0.07 2.47 6.66 -2.39 -0.02 2.45 16 29 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 30 H 0.13 4.01 7.39 -2.39 -0.02 3.99 16 31 H 0.12 3.75 6.54 -2.38 -0.02 3.74 16 32 H 0.18 4.99 8.06 -2.91 -0.02 4.97 16 33 H 0.17 4.12 8.06 -2.91 -0.02 4.09 16 34 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 37 H 0.11 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -73.62 314.98 6.22 -67.40 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 1.07 Total: 24.94 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 5.69 Total: -10.54 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -2.52 Total: -89.08 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.05 Total: -36.80 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -73.62 6.22 -67.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124143214.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.901 kcal (2) G-P(sol) polarization free energy of solvation -73.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds