Wall clock time and date at job start Mon Mar 30 2020 01:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47015 * 2 1 4 4 C 1.36970 * 120.00138 * 276.16733 * 3 2 1 5 5 H 1.07996 * 120.00106 * 142.78946 * 4 3 2 6 6 C 1.38964 * 120.00203 * 322.79932 * 4 3 2 7 7 N 1.31432 * 119.99699 * 337.42211 * 6 4 3 8 8 Si 1.86795 * 120.00290 * 157.42710 * 6 4 3 9 9 H 1.48497 * 109.47421 * 59.99656 * 8 6 4 10 10 H 1.48504 * 109.47371 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46675 * 299.99487 * 8 6 4 12 12 C 1.34777 * 119.99978 * 96.17386 * 3 2 1 13 13 O 1.21701 * 119.99766 * 180.02562 * 12 3 2 14 14 C 1.46822 * 119.99831 * 359.97438 * 12 3 2 15 15 C 1.36462 * 126.77641 * 270.02989 * 14 12 3 16 16 C 1.50701 * 125.12431 * 359.96333 * 15 14 12 17 17 N 1.35488 * 109.75157 * 179.70759 * 15 14 12 18 18 H 0.97002 * 124.78509 * 180.24652 * 17 15 14 19 19 C 1.37974 * 110.43244 * 0.25876 * 17 15 14 20 20 C 1.39115 * 133.17830 * 180.02562 * 19 17 15 21 21 C 1.37770 * 119.93307 * 179.97438 * 20 19 17 22 22 C 1.38745 * 120.63619 * 0.02562 * 21 20 19 23 23 C 1.37762 * 120.29880 * 359.96192 * 22 21 20 24 24 C 1.39275 * 119.66936 * 0.02562 * 23 22 21 25 25 H 1.08994 * 109.47502 * 59.99807 * 1 2 3 26 26 H 1.09002 * 109.47001 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47172 * 299.99660 * 1 2 3 28 28 H 1.09007 * 109.47306 * 240.00241 * 2 1 3 29 29 H 1.08994 * 109.47502 * 120.00193 * 2 1 3 30 30 H 0.97003 * 119.99601 * 179.97438 * 7 6 4 31 31 H 1.09003 * 109.47684 * 269.72528 * 16 15 14 32 32 H 1.08997 * 109.47099 * 149.72032 * 16 15 14 33 33 H 1.09005 * 109.46815 * 29.72580 * 16 15 14 34 34 H 1.07999 * 120.03413 * 359.94313 * 20 19 17 35 35 H 1.08002 * 119.68373 * 180.02562 * 21 20 19 36 36 H 1.07999 * 119.85497 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.17060 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1264 2.0694 -1.1793 5 1 1.8916 3.1230 -1.2132 6 6 2.5380 1.4119 -2.3323 7 7 3.2326 0.2997 -2.2421 8 14 2.1044 2.1087 -4.0103 9 1 2.6845 3.4689 -4.1464 10 1 2.6555 1.2266 -5.0702 11 1 0.6278 2.1843 -4.1482 12 6 2.3612 1.9747 1.1604 13 8 2.7664 3.1223 1.1604 14 6 2.2449 1.2372 2.4246 15 6 1.1556 1.1889 3.2451 16 6 -0.1499 1.8993 2.9957 17 7 1.4226 0.4015 4.3148 18 1 0.7984 0.2134 5.0331 19 6 2.7076 -0.0950 4.2387 20 6 3.4554 -0.9311 5.0615 21 6 4.7474 -1.2606 4.7148 22 6 5.3148 -0.7657 3.5494 23 6 4.5904 0.0634 2.7213 24 6 3.2831 0.4044 3.0595 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.5196 -0.1594 -3.0469 31 1 -0.1177 2.8892 3.4511 32 1 -0.9658 1.3243 3.4335 33 1 -0.3103 1.9984 1.9221 34 1 3.0238 -1.3212 5.9714 35 1 5.3242 -1.9104 5.3563 36 1 6.3289 -1.0318 3.2900 37 1 5.0340 0.4471 1.8145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127950976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:57 Heat of formation + Delta-G solvation = 25.303553 kcal Electronic energy + Delta-G solvation = -21167.765030 eV Core-core repulsion = 18103.585551 eV Total energy + Delta-G solvation = -3064.179478 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.05837 -38.07902 -36.69592 -34.78563 -32.18997 -31.42088 -30.79610 -29.32861 -29.02830 -26.75577 -25.00322 -22.48588 -22.05647 -21.41569 -20.81334 -18.24777 -17.35473 -16.57553 -16.05967 -15.58739 -14.91417 -14.67746 -14.47562 -13.99210 -13.81280 -13.54226 -13.15667 -13.00640 -12.62270 -12.55244 -12.31117 -12.02244 -11.71239 -11.51789 -11.17995 -11.08260 -10.98550 -10.86054 -10.55628 -10.32583 -10.28745 -9.94793 -9.28350 -8.86535 -8.40731 -7.87606 -7.35562 -7.19389 -6.24450 -3.89548 1.42751 1.92378 2.90788 3.22927 3.29178 3.30056 3.33855 3.92773 4.21330 4.27035 4.96170 5.01343 5.04139 5.11267 5.33802 5.38442 5.48712 5.69733 5.73331 5.81312 5.91374 5.99889 6.14057 6.20054 6.23554 6.36412 6.44189 6.48327 6.69039 6.75952 6.93247 6.99046 7.06637 7.14942 7.37973 7.46768 7.66975 7.78421 8.35563 8.61890 9.26959 9.50225 10.14601 10.77973 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022025 B = 0.006487 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.953987 B = 4315.618847 C = 4889.089307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.098 3.902 3 N -0.428 5.428 4 C -0.311 4.311 5 H 0.090 0.910 6 C 0.039 3.961 7 N -0.865 5.865 8 Si 0.915 3.085 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.528 3.472 13 O -0.579 6.579 14 C -0.170 4.170 15 C 0.095 3.905 16 C -0.095 4.095 17 N -0.588 5.588 18 H 0.410 0.590 19 C 0.092 3.908 20 C -0.136 4.136 21 C -0.104 4.104 22 C -0.151 4.151 23 C -0.058 4.058 24 C -0.074 4.074 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.106 0.894 29 H 0.051 0.949 30 H 0.267 0.733 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.285 -5.700 11.421 13.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.026 4.026 3 N -0.147 5.147 4 C -0.438 4.438 5 H 0.108 0.892 6 C -0.165 4.165 7 N -0.502 5.502 8 Si 0.742 3.258 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.315 3.685 13 O -0.463 6.463 14 C -0.180 4.180 15 C -0.015 4.015 16 C -0.152 4.152 17 N -0.191 5.191 18 H 0.247 0.753 19 C -0.014 4.014 20 C -0.157 4.157 21 C -0.124 4.124 22 C -0.170 4.170 23 C -0.076 4.076 24 C -0.079 4.079 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.124 0.876 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.094 -5.278 11.313 13.138 hybrid contribution -0.441 -0.035 -0.443 0.626 sum -4.535 -5.313 10.871 12.922 Atomic orbital electron populations 1.22203 0.98344 0.99998 1.01531 1.21506 0.92007 0.85562 1.03528 1.43415 1.54604 1.11866 1.04770 1.19333 1.44521 0.95632 0.84364 0.89226 1.25352 0.94546 0.96670 0.99968 1.69939 1.31904 1.18709 1.29669 0.86184 0.78978 0.79072 0.81587 1.19749 1.21056 1.19953 1.17378 0.81389 0.86880 0.82858 1.90633 1.50081 1.18558 1.87001 1.20266 0.93354 1.05496 0.98908 1.20243 0.96742 0.96258 0.88235 1.20571 0.90842 0.99350 1.04455 1.41289 1.12316 1.43319 1.22156 0.75337 1.18150 0.85420 1.00161 0.97683 1.19880 0.94782 1.01353 0.99696 1.20688 0.94230 1.00243 0.97195 1.20839 1.00098 1.00436 0.95661 1.20654 0.92132 0.95777 0.99059 1.18906 0.94428 0.99806 0.94754 0.92388 0.93583 0.93713 0.87644 0.93071 0.92267 0.90402 0.91519 0.89007 0.86735 0.86175 0.86171 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 10.20 37.16 0.38 -2.71 16 2 C 0.10 2.25 5.69 -4.04 -0.02 2.22 16 3 N -0.43 -11.17 2.53 -116.24 -0.29 -11.46 16 4 C -0.31 -8.71 8.85 -14.99 -0.13 -8.84 16 5 H 0.09 2.61 7.77 -52.49 -0.41 2.21 16 6 C 0.04 1.05 4.99 -17.45 -0.09 0.96 16 7 N -0.86 -23.62 11.44 55.50 0.63 -22.98 16 8 Si 0.92 20.70 29.61 -169.99 -5.03 15.66 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 12 C 0.53 13.77 6.97 -12.79 -0.09 13.68 16 13 O -0.58 -17.29 16.97 5.19 0.09 -17.21 16 14 C -0.17 -3.68 4.12 -103.31 -0.43 -4.11 16 15 C 0.09 1.63 7.11 -81.62 -0.58 1.05 16 16 C -0.09 -1.35 9.59 36.01 0.35 -1.00 16 17 N -0.59 -8.48 5.99 -6.76 -0.04 -8.52 16 18 H 0.41 4.20 8.96 -40.82 -0.37 3.84 16 19 C 0.09 1.52 7.25 -83.96 -0.61 0.91 16 20 C -0.14 -1.88 10.07 -39.43 -0.40 -2.28 16 21 C -0.10 -1.41 10.01 -39.57 -0.40 -1.81 16 22 C -0.15 -2.34 10.03 -39.57 -0.40 -2.74 16 23 C -0.06 -1.11 10.09 -39.37 -0.40 -1.51 16 24 C -0.07 -1.49 6.13 -104.95 -0.64 -2.13 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.78 5.47 -51.93 -0.28 0.49 16 28 H 0.11 2.65 5.52 -51.92 -0.29 2.36 16 29 H 0.05 1.14 6.47 -51.93 -0.34 0.81 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.49 5.99 -51.93 -0.31 1.17 16 34 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.13 2.62 8.06 -52.49 -0.42 2.19 16 LS Contribution 312.25 15.07 4.71 4.71 Total: -1.00 -33.25 312.25 -7.90 -41.15 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -4.51 Total: 6.95 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -3.45 Total: -8.30 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.30 Total: -42.97 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.09 Total: -17.21 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.25 -7.90 -41.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127950976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.453 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds