Wall clock time and date at job start Mon Mar 30 2020 01:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47015 * 2 1 4 4 C 1.36970 * 120.00138 * 276.16733 * 3 2 1 5 5 H 1.07996 * 120.00106 * 142.78946 * 4 3 2 6 6 C 1.38964 * 120.00203 * 322.79932 * 4 3 2 7 7 N 1.31432 * 119.99699 * 337.42211 * 6 4 3 8 8 Si 1.86795 * 120.00290 * 157.42710 * 6 4 3 9 9 H 1.48497 * 109.47421 * 59.99656 * 8 6 4 10 10 H 1.48504 * 109.47371 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46675 * 299.99487 * 8 6 4 12 12 C 1.34777 * 119.99978 * 96.17386 * 3 2 1 13 13 O 1.21701 * 119.99766 * 180.02562 * 12 3 2 14 14 C 1.46822 * 119.99831 * 359.97438 * 12 3 2 15 15 C 1.36462 * 126.77641 * 270.02989 * 14 12 3 16 16 C 1.50701 * 125.12431 * 359.96333 * 15 14 12 17 17 N 1.35488 * 109.75157 * 179.70759 * 15 14 12 18 18 H 0.97002 * 124.78509 * 180.24652 * 17 15 14 19 19 C 1.37974 * 110.43244 * 0.25876 * 17 15 14 20 20 C 1.39115 * 133.17830 * 180.02562 * 19 17 15 21 21 C 1.37770 * 119.93307 * 179.97438 * 20 19 17 22 22 C 1.38745 * 120.63619 * 0.02562 * 21 20 19 23 23 C 1.37762 * 120.29880 * 359.96192 * 22 21 20 24 24 C 1.39275 * 119.66936 * 0.02562 * 23 22 21 25 25 H 1.08994 * 109.47502 * 59.99807 * 1 2 3 26 26 H 1.09002 * 109.47001 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47172 * 299.99660 * 1 2 3 28 28 H 1.09007 * 109.47306 * 240.00241 * 2 1 3 29 29 H 1.08994 * 109.47502 * 120.00193 * 2 1 3 30 30 H 0.97003 * 119.99601 * 179.97438 * 7 6 4 31 31 H 1.09003 * 109.47684 * 269.72528 * 16 15 14 32 32 H 1.08997 * 109.47099 * 149.72032 * 16 15 14 33 33 H 1.09005 * 109.46815 * 29.72580 * 16 15 14 34 34 H 1.07999 * 120.03413 * 359.94313 * 20 19 17 35 35 H 1.08002 * 119.68373 * 180.02562 * 21 20 19 36 36 H 1.07999 * 119.85497 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.17060 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1264 2.0694 -1.1793 5 1 1.8916 3.1230 -1.2132 6 6 2.5380 1.4119 -2.3323 7 7 3.2326 0.2997 -2.2421 8 14 2.1044 2.1087 -4.0103 9 1 2.6845 3.4689 -4.1464 10 1 2.6555 1.2266 -5.0702 11 1 0.6278 2.1843 -4.1482 12 6 2.3612 1.9747 1.1604 13 8 2.7664 3.1223 1.1604 14 6 2.2449 1.2372 2.4246 15 6 1.1556 1.1889 3.2451 16 6 -0.1499 1.8993 2.9957 17 7 1.4226 0.4015 4.3148 18 1 0.7984 0.2134 5.0331 19 6 2.7076 -0.0950 4.2387 20 6 3.4554 -0.9311 5.0615 21 6 4.7474 -1.2606 4.7148 22 6 5.3148 -0.7657 3.5494 23 6 4.5904 0.0634 2.7213 24 6 3.2831 0.4044 3.0595 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.5196 -0.1594 -3.0469 31 1 -0.1177 2.8892 3.4511 32 1 -0.9658 1.3243 3.4335 33 1 -0.3103 1.9984 1.9221 34 1 3.0238 -1.3212 5.9714 35 1 5.3242 -1.9104 5.3563 36 1 6.3289 -1.0318 3.2900 37 1 5.0340 0.4471 1.8145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127950976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:56 Heat of formation + Delta-G solvation = 3.892493 kcal Electronic energy + Delta-G solvation = -21168.693483 eV Core-core repulsion = 18103.585551 eV Total energy + Delta-G solvation = -3065.107931 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.38902 -39.99485 -37.95070 -36.82856 -34.06951 -32.93135 -32.02875 -31.12988 -30.34034 -28.15474 -26.88054 -24.22355 -23.44561 -22.95708 -22.12097 -19.93644 -18.81036 -18.49795 -17.48917 -17.35645 -16.59896 -16.18236 -15.90692 -15.59285 -15.44951 -14.82685 -14.63272 -14.58362 -14.37280 -13.86815 -13.76804 -13.55010 -13.31526 -13.14113 -12.83015 -12.66717 -12.37188 -12.36117 -12.27393 -12.09982 -11.85607 -11.73062 -11.02152 -10.60142 -10.37456 -9.42487 -9.11805 -8.55388 -8.31436 -6.06522 0.15016 0.67952 1.38948 1.40661 1.49711 1.54891 1.98926 2.10552 2.33344 2.96537 3.01325 3.23362 3.71287 3.88057 4.07988 4.24105 4.32496 4.39570 4.42560 4.53300 4.62158 4.62505 4.67110 4.76077 4.79767 5.01282 5.02123 5.12298 5.17937 5.31073 5.45661 5.53442 5.59400 5.66120 5.72818 5.80203 6.20564 6.23301 6.57877 6.71885 7.18582 7.48053 8.12279 8.69672 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022025 B = 0.006487 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.953987 B = 4315.618847 C = 4889.089307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.104 3.896 3 N -0.436 5.436 4 C -0.347 4.347 5 H 0.065 0.935 6 C 0.004 3.996 7 N -0.888 5.888 8 Si 0.984 3.016 9 H -0.277 1.277 10 H -0.272 1.272 11 H -0.260 1.260 12 C 0.522 3.478 13 O -0.639 6.639 14 C -0.236 4.236 15 C 0.126 3.874 16 C -0.096 4.096 17 N -0.562 5.562 18 H 0.436 0.564 19 C 0.087 3.913 20 C -0.117 4.117 21 C -0.100 4.100 22 C -0.139 4.139 23 C -0.108 4.108 24 C -0.108 4.108 25 H 0.044 0.956 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.273 0.727 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.067 0.933 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.140 0.860 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.938 -8.036 13.958 17.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 N -0.153 5.153 4 C -0.475 4.475 5 H 0.082 0.918 6 C -0.198 4.198 7 N -0.525 5.525 8 Si 0.806 3.194 9 H -0.202 1.202 10 H -0.196 1.196 11 H -0.184 1.184 12 C 0.312 3.688 13 O -0.527 6.527 14 C -0.246 4.246 15 C 0.013 3.987 16 C -0.153 4.153 17 N -0.167 5.167 18 H 0.277 0.723 19 C -0.020 4.020 20 C -0.137 4.137 21 C -0.119 4.119 22 C -0.158 4.158 23 C -0.127 4.127 24 C -0.112 4.112 25 H 0.063 0.937 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.133 0.867 33 H 0.086 0.914 34 H 0.180 0.820 35 H 0.184 0.816 36 H 0.158 0.842 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.773 -7.677 13.886 16.885 hybrid contribution 0.160 0.638 -1.139 1.315 sum -5.612 -7.039 12.747 15.606 Atomic orbital electron populations 1.22095 0.95014 1.02109 1.01728 1.21488 0.94654 0.83633 1.02194 1.43651 1.54405 1.12735 1.04469 1.19344 1.46694 0.95227 0.86227 0.91759 1.26182 0.93574 0.96874 1.03207 1.70034 1.31884 1.19609 1.30966 0.85165 0.79386 0.78046 0.76764 1.20242 1.19632 1.18408 1.18045 0.79855 0.86367 0.84543 1.90549 1.52621 1.21289 1.88240 1.19930 0.96655 1.09227 0.98785 1.20473 0.96282 0.94511 0.87411 1.20694 0.90731 1.00455 1.03411 1.41137 1.12138 1.41693 1.21745 0.72254 1.18370 0.86050 1.00708 0.96840 1.20447 0.94300 0.98870 1.00081 1.21203 0.94557 0.99804 0.96348 1.21145 1.00602 0.98429 0.95601 1.20561 0.93328 0.99368 0.99456 1.19126 0.94676 1.00778 0.96656 0.93681 0.90344 0.92065 0.90097 0.93018 0.91698 0.89357 0.86700 0.91408 0.82012 0.81597 0.84245 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.72 10.20 71.98 0.73 -4.99 16 2 C 0.10 4.95 5.69 86.38 0.49 5.44 16 3 N -0.44 -24.26 2.53 -639.89 -1.62 -25.88 16 4 C -0.35 -20.77 8.85 84.06 0.74 -20.02 16 5 H 0.06 4.07 7.77 -2.91 -0.02 4.05 16 6 C 0.00 0.25 4.99 84.93 0.42 0.67 16 7 N -0.89 -50.49 11.44 21.67 0.25 -50.24 16 8 Si 0.98 43.64 29.61 68.60 2.03 45.67 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 11 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 12 C 0.52 29.39 6.97 86.49 0.60 29.99 16 13 O -0.64 -41.61 16.97 -4.35 -0.07 -41.68 16 14 C -0.24 -10.64 4.12 -19.02 -0.08 -10.72 16 15 C 0.13 4.21 7.11 41.58 0.30 4.51 16 16 C -0.10 -2.54 9.59 71.24 0.68 -1.85 16 17 N -0.56 -14.43 5.99 -175.30 -1.05 -15.48 16 18 H 0.44 6.72 8.96 -92.71 -0.83 5.89 16 19 C 0.09 2.65 7.25 38.91 0.28 2.93 16 20 C -0.12 -2.67 10.07 22.37 0.23 -2.45 16 21 C -0.10 -2.30 10.01 22.28 0.22 -2.08 16 22 C -0.14 -4.20 10.03 22.28 0.22 -3.97 16 23 C -0.11 -4.45 10.09 22.41 0.23 -4.23 16 24 C -0.11 -4.46 6.13 -20.07 -0.12 -4.59 16 25 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.06 2.09 5.47 -2.39 -0.01 2.08 16 28 H 0.08 4.25 5.52 -2.38 -0.01 4.24 16 29 H 0.05 2.42 6.47 -2.39 -0.02 2.41 16 30 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 31 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 2.17 5.99 -2.38 -0.01 2.16 16 34 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 35 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 36 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 37 H 0.08 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -81.65 312.25 4.76 -76.89 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.27 Total: 22.08 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 4.95 Total: -11.36 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -2.42 Total: -91.60 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -0.07 Total: -41.68 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -81.65 4.76 -76.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127950976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.783 kcal (2) G-P(sol) polarization free energy of solvation -81.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds