Wall clock time and date at job start Mon Mar 30 2020 02:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36014 * 117.00241 * 2 1 4 4 C 1.38057 * 120.00888 * 0.02562 * 3 2 1 5 5 C 1.39822 * 119.86983 * 179.70340 * 4 3 2 6 6 C 1.43200 * 120.06389 * 180.27885 * 5 4 3 7 7 N 5.84053 * 81.26317 * 0.17860 * 2 1 3 8 8 C 1.39773 * 119.87625 * 0.53721 * 5 4 3 9 9 C 1.37756 * 120.00734 * 359.48428 * 8 5 4 10 10 C 1.38999 * 120.13924 * 0.23777 * 9 8 5 11 11 N 1.39437 * 119.93903 * 179.97438 * 10 9 8 12 12 C 1.46502 * 120.00235 * 354.87431 * 11 10 9 13 13 C 1.53006 * 109.47027 * 185.08391 * 12 11 10 14 14 C 1.50692 * 115.54901 * 39.79416 * 13 12 11 15 15 H 1.07997 * 120.00336 * 264.76952 * 14 13 12 16 16 C 1.37882 * 120.00165 * 84.77373 * 14 13 12 17 17 N 1.31511 * 119.99988 * 184.86319 * 16 14 13 18 18 Si 1.86801 * 119.99721 * 4.86021 * 16 14 13 19 19 H 1.48492 * 109.47162 * 94.79815 * 18 16 14 20 20 H 1.48500 * 109.47071 * 214.79906 * 18 16 14 21 21 H 1.48500 * 109.46968 * 334.79414 * 18 16 14 22 22 C 1.52999 * 117.49729 * 254.08496 * 13 12 11 23 23 C 1.53001 * 117.49738 * 185.46347 * 13 12 11 24 24 H 1.09004 * 109.46764 * 300.00739 * 1 2 3 25 25 H 1.08995 * 109.46822 * 60.00223 * 1 2 3 26 26 H 1.08993 * 109.47672 * 180.02562 * 1 2 3 27 27 H 1.08006 * 120.06734 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.99789 * 179.77078 * 8 5 4 29 29 H 1.08006 * 119.93211 * 180.25417 * 9 8 5 30 30 H 0.97008 * 120.00202 * 174.87579 * 11 10 9 31 31 H 1.08996 * 109.47369 * 305.08550 * 12 11 10 32 32 H 1.09003 * 109.46900 * 65.08548 * 12 11 10 33 33 H 0.97006 * 119.99531 * 179.97438 * 17 16 14 34 34 H 1.08998 * 117.50375 * 0.02562 * 22 13 12 35 35 H 1.08999 * 117.49968 * 145.02421 * 22 13 12 36 36 H 1.08995 * 117.50018 * 214.98067 * 23 13 12 37 37 H 1.09005 * 117.49905 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2949 2.3699 0.0005 5 6 1.9327 3.6141 0.0068 6 6 1.1571 4.8178 0.0134 7 7 0.5418 5.7727 0.0180 8 6 3.3288 3.6808 0.0012 9 6 4.0739 2.5222 0.0002 10 6 3.4404 1.2850 -0.0002 11 7 4.1987 0.1148 -0.0018 12 6 5.6574 0.1873 -0.1163 13 6 6.2317 -1.2270 -0.2205 14 6 5.4412 -2.1885 -1.0699 15 1 4.7218 -2.8497 -0.6099 16 6 5.6365 -2.2243 -2.4343 17 7 4.8807 -2.9937 -3.1868 18 14 6.9746 -1.1797 -3.2140 19 1 8.2087 -1.9909 -3.3687 20 1 6.5212 -0.7090 -4.5474 21 1 7.2574 -0.0087 -2.3456 22 6 6.9453 -1.7920 1.0093 23 6 7.7548 -1.3728 -0.2195 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.2162 2.3148 0.0005 28 1 3.8235 4.6409 0.0022 29 1 5.1527 2.5752 -0.0001 30 1 3.7603 -0.7473 0.0730 31 1 5.9241 0.7544 -1.0082 32 1 6.0669 0.6818 0.7646 33 1 5.0179 -3.0185 -4.1468 34 1 7.0052 -1.1564 1.8928 35 1 6.8430 -2.8595 1.2044 36 1 8.1850 -2.1645 -0.8328 37 1 8.3476 -0.4611 -0.1450 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130061323.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:38 Heat of formation + Delta-G solvation = 47.017909 kcal Electronic energy + Delta-G solvation = -20245.327446 eV Core-core repulsion = 17182.089573 eV Total energy + Delta-G solvation = -3063.237873 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.12293 -37.76594 -37.36159 -36.15643 -34.34760 -32.21145 -30.16488 -29.73596 -27.19480 -26.28258 -25.29148 -22.58203 -21.85917 -21.70950 -19.38664 -18.98450 -16.94100 -16.70649 -16.35515 -15.71972 -15.57661 -15.04283 -14.33819 -14.15152 -13.85625 -13.77165 -13.53640 -13.42126 -13.25458 -12.77727 -12.42839 -12.32942 -12.20185 -12.09528 -11.33259 -11.24300 -11.09428 -10.93440 -10.78521 -10.59088 -10.28683 -9.80244 -9.60391 -9.19998 -8.68070 -8.58469 -8.46735 -6.79596 -6.21963 -4.27098 1.16309 1.57277 2.84010 3.19090 3.21514 3.33008 3.33549 3.45642 3.88673 4.11410 4.18170 4.32988 4.80665 4.91639 5.07139 5.15147 5.16829 5.28642 5.51627 5.56733 5.61395 5.65267 5.84258 5.86701 5.98646 6.05798 6.14301 6.26766 6.32892 6.37259 6.53594 6.60181 6.76871 6.86336 6.99487 7.41091 7.59343 7.68474 7.85569 8.32497 8.39261 8.79076 9.40898 10.88987 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019824 B = 0.005318 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.072970 B = 5263.568680 C = 5595.413955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.309 6.309 3 C 0.043 3.957 4 C -0.112 4.112 5 C -0.094 4.094 6 C 0.275 3.725 7 N -0.456 5.456 8 C -0.038 4.038 9 C -0.196 4.196 10 C 0.250 3.750 11 N -0.689 5.689 12 C 0.150 3.850 13 C -0.013 4.013 14 C -0.493 4.493 15 H 0.079 0.921 16 C 0.085 3.915 17 N -0.889 5.889 18 Si 0.878 3.122 19 H -0.280 1.280 20 H -0.294 1.294 21 H -0.255 1.255 22 C -0.179 4.179 23 C -0.194 4.194 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.098 0.902 27 H 0.130 0.870 28 H 0.126 0.874 29 H 0.135 0.865 30 H 0.420 0.580 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.266 0.734 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.527 7.298 6.701 10.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.223 6.223 3 C -0.006 4.006 4 C -0.135 4.135 5 C -0.101 4.101 6 C -0.039 4.039 7 N -0.132 5.132 8 C -0.060 4.060 9 C -0.220 4.220 10 C 0.136 3.864 11 N -0.312 5.312 12 C 0.026 3.974 13 C -0.014 4.014 14 C -0.530 4.530 15 H 0.096 0.904 16 C -0.119 4.119 17 N -0.525 5.525 18 Si 0.706 3.294 19 H -0.206 1.206 20 H -0.221 1.221 21 H -0.179 1.179 22 C -0.216 4.216 23 C -0.231 4.231 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.117 0.883 27 H 0.148 0.852 28 H 0.144 0.856 29 H 0.153 0.847 30 H 0.259 0.741 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.194 8.434 6.496 11.115 hybrid contribution 0.593 -0.130 -0.670 0.904 sum -2.601 8.304 5.826 10.472 Atomic orbital electron populations 1.22984 0.78816 1.03831 1.00753 1.86113 1.20825 1.25652 1.89706 1.18170 0.90329 0.84781 1.07289 1.20770 0.99401 0.90246 1.03069 1.15338 0.91450 0.86418 1.16930 1.25767 0.92912 0.92770 0.92436 1.81193 1.09245 1.11100 1.11707 1.20705 0.91175 0.98248 0.95827 1.20354 1.00132 0.89588 1.11926 1.17625 0.87419 0.88559 0.92751 1.44947 1.06097 1.06080 1.74045 1.21185 0.79424 0.97958 0.98866 1.19555 0.90713 0.93117 0.98050 1.20122 1.22690 1.19444 0.90790 0.90350 1.24954 0.95470 0.94508 0.97007 1.69895 1.38234 1.38808 1.05597 0.86886 0.82220 0.81797 0.78546 1.20643 1.22071 1.17903 1.22909 1.06562 1.00829 0.91321 1.22949 0.95766 1.01871 1.02555 0.93127 0.92951 0.88338 0.85221 0.85575 0.84685 0.74076 0.92307 0.93755 0.92458 0.90821 0.89496 0.89361 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.31 -4.75 9.73 -19.79 -0.19 -4.95 16 3 C 0.04 0.65 6.70 -39.15 -0.26 0.39 16 4 C -0.11 -1.47 8.74 -39.06 -0.34 -1.81 16 5 C -0.09 -1.23 5.74 -106.81 -0.61 -1.84 16 6 C 0.27 3.81 15.32 -22.48 -0.34 3.47 16 7 N -0.46 -7.11 18.54 41.83 0.78 -6.33 16 8 C -0.04 -0.47 9.74 -39.18 -0.38 -0.85 16 9 C -0.20 -2.69 9.27 -39.48 -0.37 -3.05 16 10 C 0.25 3.98 6.66 -83.62 -0.56 3.42 16 11 N -0.69 -12.38 5.44 -58.49 -0.32 -12.70 16 12 C 0.15 2.70 4.81 -4.04 -0.02 2.68 16 13 C -0.01 -0.27 1.13 -155.66 -0.18 -0.45 16 14 C -0.49 -12.33 8.09 -34.44 -0.28 -12.60 16 15 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 16 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 17 N -0.89 -25.44 13.96 55.43 0.77 -24.67 16 18 Si 0.88 20.25 25.19 -169.99 -4.28 15.96 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.25 -5.40 5.23 56.52 0.30 -5.10 16 22 C -0.18 -3.23 9.88 -26.73 -0.26 -3.50 16 23 C -0.19 -3.67 7.33 -26.73 -0.20 -3.86 16 24 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 25 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 26 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.13 1.43 6.28 -52.48 -0.33 1.10 16 28 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 29 H 0.14 1.70 6.73 -52.48 -0.35 1.35 16 30 H 0.42 8.26 6.90 -40.82 -0.28 7.98 16 31 H 0.06 1.10 6.40 -51.93 -0.33 0.77 16 32 H 0.04 0.70 7.79 -51.93 -0.40 0.29 16 33 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 35 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.09 1.78 7.13 -51.93 -0.37 1.41 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 314.49 15.07 4.74 4.74 Total: -1.00 -28.37 314.49 -6.05 -34.42 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -4.64 Total: 8.05 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -2.91 Total: -14.52 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 1.23 Total: -43.70 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.19 Total: -4.95 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.28 Total: 15.96 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.37 -6.05 -34.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130061323.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.436 kcal (2) G-P(sol) polarization free energy of solvation -28.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds