Wall clock time and date at job start Mon Mar 30 2020 02:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36014 * 117.00241 * 2 1 4 4 C 1.38057 * 120.00888 * 0.02562 * 3 2 1 5 5 C 1.39822 * 119.86983 * 179.70340 * 4 3 2 6 6 C 1.43200 * 120.06389 * 180.27885 * 5 4 3 7 7 N 5.84053 * 81.26317 * 0.17860 * 2 1 3 8 8 C 1.39773 * 119.87625 * 0.53721 * 5 4 3 9 9 C 1.37756 * 120.00734 * 359.48428 * 8 5 4 10 10 C 1.38999 * 120.13924 * 0.23777 * 9 8 5 11 11 N 1.39437 * 119.93903 * 179.97438 * 10 9 8 12 12 C 1.46502 * 120.00235 * 354.87431 * 11 10 9 13 13 C 1.53006 * 109.47027 * 185.08391 * 12 11 10 14 14 C 1.50692 * 115.54901 * 39.79416 * 13 12 11 15 15 H 1.07997 * 120.00336 * 264.76952 * 14 13 12 16 16 C 1.37882 * 120.00165 * 84.77373 * 14 13 12 17 17 N 1.31511 * 119.99988 * 184.86319 * 16 14 13 18 18 Si 1.86801 * 119.99721 * 4.86021 * 16 14 13 19 19 H 1.48492 * 109.47162 * 94.79815 * 18 16 14 20 20 H 1.48500 * 109.47071 * 214.79906 * 18 16 14 21 21 H 1.48500 * 109.46968 * 334.79414 * 18 16 14 22 22 C 1.52999 * 117.49729 * 254.08496 * 13 12 11 23 23 C 1.53001 * 117.49738 * 185.46347 * 13 12 11 24 24 H 1.09004 * 109.46764 * 300.00739 * 1 2 3 25 25 H 1.08995 * 109.46822 * 60.00223 * 1 2 3 26 26 H 1.08993 * 109.47672 * 180.02562 * 1 2 3 27 27 H 1.08006 * 120.06734 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.99789 * 179.77078 * 8 5 4 29 29 H 1.08006 * 119.93211 * 180.25417 * 9 8 5 30 30 H 0.97008 * 120.00202 * 174.87579 * 11 10 9 31 31 H 1.08996 * 109.47369 * 305.08550 * 12 11 10 32 32 H 1.09003 * 109.46900 * 65.08548 * 12 11 10 33 33 H 0.97006 * 119.99531 * 179.97438 * 17 16 14 34 34 H 1.08998 * 117.50375 * 0.02562 * 22 13 12 35 35 H 1.08999 * 117.49968 * 145.02421 * 22 13 12 36 36 H 1.08995 * 117.50018 * 214.98067 * 23 13 12 37 37 H 1.09005 * 117.49905 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2949 2.3699 0.0005 5 6 1.9327 3.6141 0.0068 6 6 1.1571 4.8178 0.0134 7 7 0.5418 5.7727 0.0180 8 6 3.3288 3.6808 0.0012 9 6 4.0739 2.5222 0.0002 10 6 3.4404 1.2850 -0.0002 11 7 4.1987 0.1148 -0.0018 12 6 5.6574 0.1873 -0.1163 13 6 6.2317 -1.2270 -0.2205 14 6 5.4412 -2.1885 -1.0699 15 1 4.7218 -2.8497 -0.6099 16 6 5.6365 -2.2243 -2.4343 17 7 4.8807 -2.9937 -3.1868 18 14 6.9746 -1.1797 -3.2140 19 1 8.2087 -1.9909 -3.3687 20 1 6.5212 -0.7090 -4.5474 21 1 7.2574 -0.0087 -2.3456 22 6 6.9453 -1.7920 1.0093 23 6 7.7548 -1.3728 -0.2195 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.2162 2.3148 0.0005 28 1 3.8235 4.6409 0.0022 29 1 5.1527 2.5752 -0.0001 30 1 3.7603 -0.7473 0.0730 31 1 5.9241 0.7544 -1.0082 32 1 6.0669 0.6818 0.7646 33 1 5.0179 -3.0185 -4.1468 34 1 7.0052 -1.1564 1.8928 35 1 6.8430 -2.8595 1.2044 36 1 8.1850 -2.1645 -0.8328 37 1 8.3476 -0.4611 -0.1450 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130061323.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:38 Heat of formation + Delta-G solvation = 29.898495 kcal Electronic energy + Delta-G solvation = -20246.069800 eV Core-core repulsion = 17182.089573 eV Total energy + Delta-G solvation = -3063.980226 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.20554 -39.13084 -38.53379 -37.35638 -35.57535 -34.19191 -31.20575 -30.90075 -28.14383 -27.90794 -26.85144 -23.71466 -23.18277 -22.94772 -20.91562 -20.17534 -18.34817 -18.07760 -17.57401 -16.99341 -16.70943 -16.55412 -15.72251 -15.23565 -15.16638 -14.84397 -14.79016 -14.74268 -14.59127 -14.41504 -13.87894 -13.51978 -13.34002 -13.16171 -12.99089 -12.63694 -12.34351 -12.14551 -12.03728 -11.92439 -11.83852 -11.39539 -11.07765 -10.87678 -10.49685 -10.17768 -9.50880 -8.24504 -7.99571 -6.31126 0.07299 0.53903 1.39118 1.43434 1.53485 1.73227 2.08514 2.41562 2.43601 2.67103 3.04414 3.07088 3.14104 3.33062 3.90324 4.10964 4.21984 4.28900 4.41222 4.44167 4.47641 4.49041 4.57336 4.70825 4.79794 4.83190 4.90929 4.93904 5.08768 5.16168 5.25760 5.33971 5.48569 5.55117 5.74475 5.77880 6.27188 6.36853 6.58447 6.69330 6.78921 6.97423 7.39416 8.90337 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019824 B = 0.005318 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.072970 B = 5263.568680 C = 5595.413955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.340 6.340 3 C 0.028 3.972 4 C -0.106 4.106 5 C -0.091 4.091 6 C 0.294 3.706 7 N -0.484 5.484 8 C -0.029 4.029 9 C -0.191 4.191 10 C 0.225 3.775 11 N -0.708 5.708 12 C 0.159 3.841 13 C -0.040 4.040 14 C -0.477 4.477 15 H 0.033 0.967 16 C 0.027 3.973 17 N -0.946 5.946 18 Si 0.931 3.069 19 H -0.279 1.279 20 H -0.307 1.307 21 H -0.217 1.217 22 C -0.163 4.163 23 C -0.188 4.188 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.148 0.852 28 H 0.156 0.844 29 H 0.151 0.849 30 H 0.406 0.594 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.262 0.738 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.247 10.065 7.962 12.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.254 6.254 3 C -0.020 4.020 4 C -0.128 4.128 5 C -0.098 4.098 6 C -0.019 4.019 7 N -0.161 5.161 8 C -0.050 4.050 9 C -0.214 4.214 10 C 0.114 3.886 11 N -0.331 5.331 12 C 0.035 3.965 13 C -0.041 4.041 14 C -0.515 4.515 15 H 0.051 0.949 16 C -0.171 4.171 17 N -0.586 5.586 18 Si 0.756 3.244 19 H -0.205 1.205 20 H -0.235 1.235 21 H -0.139 1.139 22 C -0.200 4.200 23 C -0.226 4.226 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.125 0.875 27 H 0.166 0.834 28 H 0.174 0.826 29 H 0.169 0.831 30 H 0.242 0.758 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.126 0.874 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.913 11.252 7.794 13.821 hybrid contribution 0.059 -1.030 -0.970 1.416 sum -1.854 10.222 6.823 12.430 Atomic orbital electron populations 1.23236 0.76916 1.04953 1.02061 1.86082 1.23012 1.26385 1.89964 1.18363 0.90489 0.85236 1.07934 1.20930 1.00329 0.89633 1.01956 1.15432 0.91903 0.85919 1.16533 1.25735 0.92224 0.92384 0.91554 1.81228 1.10112 1.12052 1.12699 1.20988 0.90730 0.99105 0.94188 1.20576 1.01031 0.88939 1.10889 1.17982 0.87898 0.88696 0.94027 1.44871 1.06134 1.06100 1.75988 1.21095 0.79543 0.95855 1.00007 1.19518 0.91462 0.93820 0.99314 1.20260 1.21337 1.18798 0.91088 0.94916 1.25749 0.97680 0.95929 0.97767 1.70058 1.41000 1.41880 1.05628 0.86032 0.79340 0.81571 0.77439 1.20470 1.23537 1.13922 1.22942 1.04523 1.00700 0.91864 1.23009 0.94461 1.02775 1.02349 0.91157 0.92146 0.87522 0.83422 0.82638 0.83121 0.75796 0.92880 0.90571 0.92944 0.87435 0.90853 0.91063 0.87417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.59 16 2 O -0.34 -10.55 9.73 -93.71 -0.91 -11.46 16 3 C 0.03 0.82 6.70 22.55 0.15 0.98 16 4 C -0.11 -2.57 8.74 22.61 0.20 -2.37 16 5 C -0.09 -2.11 5.74 -21.28 -0.12 -2.23 16 6 C 0.29 7.38 15.32 88.33 1.35 8.74 16 7 N -0.48 -14.06 18.54 19.00 0.35 -13.70 16 8 C -0.03 -0.60 9.74 22.53 0.22 -0.38 16 9 C -0.19 -4.64 9.27 22.34 0.21 -4.43 16 10 C 0.22 6.85 6.66 38.44 0.26 7.11 16 11 N -0.71 -24.98 5.44 -338.96 -1.84 -26.82 16 12 C 0.16 5.32 4.81 86.38 0.42 5.74 16 13 C -0.04 -1.57 1.13 -52.93 -0.06 -1.63 16 14 C -0.48 -24.51 8.09 25.60 0.21 -24.30 16 15 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 16 C 0.03 1.45 5.47 84.66 0.46 1.91 16 17 N -0.95 -56.81 13.96 21.45 0.30 -56.52 16 18 Si 0.93 41.50 25.19 68.60 1.73 43.23 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.31 -14.31 7.11 99.48 0.71 -13.61 16 21 H -0.22 -8.27 5.23 99.48 0.52 -7.75 16 22 C -0.16 -5.49 9.88 30.59 0.30 -5.19 16 23 C -0.19 -6.54 7.33 30.59 0.22 -6.32 16 24 H 0.07 1.17 7.66 -2.39 -0.02 1.15 16 25 H 0.06 1.15 7.66 -2.39 -0.02 1.13 16 26 H 0.11 2.00 8.14 -2.39 -0.02 1.99 16 27 H 0.15 2.93 6.28 -2.91 -0.02 2.91 16 28 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 29 H 0.15 3.16 6.73 -2.91 -0.02 3.14 16 30 H 0.41 16.47 6.90 -92.70 -0.64 15.83 16 31 H 0.05 1.80 6.40 -2.39 -0.02 1.79 16 32 H 0.08 2.05 7.79 -2.39 -0.02 2.03 16 33 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 34 H 0.11 2.92 8.08 -2.39 -0.02 2.90 16 35 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.07 2.73 7.13 -2.39 -0.02 2.71 16 37 H 0.11 3.05 8.14 -2.38 -0.02 3.03 16 Total: -1.00 -64.09 314.49 4.83 -59.27 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.27 Total: 26.80 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 4.93 Total: -20.79 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -1.19 Total: -97.04 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -0.91 Total: -11.46 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.73 Total: 43.23 kcal Total: -64.09 4.83 -59.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130061323.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.165 kcal (2) G-P(sol) polarization free energy of solvation -64.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds