Wall clock time and date at job start Mon Mar 30 2020 01:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47362 * 2 1 4 4 C 1.50709 * 109.47145 * 120.00002 * 2 1 3 5 5 N 1.30352 * 125.48049 * 75.04035 * 4 2 1 6 6 C 1.34137 * 108.90523 * 179.69777 * 5 4 2 7 7 C 1.35775 * 107.51409 * 0.42858 * 6 5 4 8 8 C 1.47822 * 126.59064 * 179.84023 * 7 6 5 9 9 C 1.39584 * 120.13924 * 359.69232 * 8 7 6 10 10 C 1.37954 * 119.84960 * 179.97438 * 9 8 7 11 11 C 1.38356 * 120.14882 * 359.97438 * 10 9 8 12 12 C 1.38350 * 120.29197 * 0.02562 * 11 10 9 13 13 C 1.37963 * 120.14902 * 359.97438 * 12 11 10 14 14 O 1.33998 * 125.48118 * 255.00086 * 4 2 1 15 15 N 1.46498 * 109.47097 * 239.99454 * 2 1 3 16 16 C 1.46498 * 120.00439 * 300.00246 * 15 2 1 17 17 C 1.36940 * 119.99609 * 120.00194 * 15 2 1 18 18 H 1.07999 * 120.00126 * 21.71339 * 17 15 2 19 19 C 1.38814 * 120.00056 * 201.71796 * 17 15 2 20 20 N 1.31615 * 119.99930 * 11.59594 * 19 17 15 21 21 Si 1.86805 * 120.00034 * 191.60431 * 19 17 15 22 22 H 1.48505 * 109.47035 * 89.99271 * 21 19 17 23 23 H 1.48497 * 109.47020 * 209.99321 * 21 19 17 24 24 H 1.48500 * 109.46966 * 329.99480 * 21 19 17 25 25 H 1.09001 * 109.47169 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47298 * 300.00170 * 1 2 3 27 27 H 1.08999 * 109.47085 * 60.00327 * 1 2 3 28 28 H 1.07996 * 126.24645 * 180.29102 * 6 5 4 29 29 H 1.07995 * 120.07025 * 359.97438 * 9 8 7 30 30 H 1.07999 * 119.92692 * 180.02562 * 10 9 8 31 31 H 1.08004 * 119.85204 * 179.72553 * 11 10 9 32 32 H 1.07998 * 119.93086 * 180.02562 * 12 11 10 33 33 H 1.07999 * 120.08044 * 180.02562 * 13 12 11 34 34 H 1.08994 * 109.46799 * 95.34180 * 16 15 2 35 35 H 1.08998 * 109.47291 * 215.33735 * 16 15 2 36 36 H 1.08998 * 109.47150 * 335.34026 * 16 15 2 37 37 H 0.97004 * 120.00051 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 2.0262 -2.0009 1.4146 6 6 2.5540 -2.2707 2.6179 7 6 2.8868 -1.0867 3.1930 8 6 3.4977 -0.8950 4.5253 9 6 3.7832 -1.9988 5.3308 10 6 4.3538 -1.8131 6.5730 11 6 4.6436 -0.5364 7.0207 12 6 4.3631 0.5618 6.2274 13 6 3.7925 0.3901 4.9831 14 8 2.5578 -0.1173 2.3111 15 7 2.0183 -0.6907 -1.1961 16 6 1.6644 -2.0933 -1.4279 17 6 2.8056 -0.0252 -2.0975 18 1 3.3525 0.8541 -1.7909 19 6 2.9006 -0.4808 -3.4053 20 7 2.0703 -1.4036 -3.8427 21 14 4.2072 0.2156 -4.5444 22 1 5.4449 -0.5977 -4.4337 23 1 3.7140 0.1784 -5.9445 24 1 4.5014 1.6195 -4.1603 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.6875 -3.2508 3.0514 29 1 3.5579 -2.9958 4.9822 30 1 4.5756 -2.6662 7.1970 31 1 5.0862 -0.3963 7.9959 32 1 4.5921 1.5556 6.5826 33 1 3.5745 1.2482 4.3645 34 1 0.7914 -2.1449 -2.0785 35 1 2.5015 -2.6057 -1.9019 36 1 1.4369 -2.5727 -0.4758 37 1 2.1369 -1.7222 -4.7564 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152214113.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:21 Heat of formation + Delta-G solvation = 76.494661 kcal Electronic energy + Delta-G solvation = -20153.779016 eV Core-core repulsion = 17091.819351 eV Total energy + Delta-G solvation = -3061.959665 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.78504 -39.08707 -36.34679 -34.19912 -32.78794 -31.88056 -31.09738 -29.32627 -27.77132 -25.95372 -24.18139 -23.37719 -22.79431 -21.61739 -20.90735 -19.59113 -17.61096 -16.84495 -16.20455 -16.07008 -15.64655 -15.07987 -14.82651 -14.00360 -13.94231 -13.66029 -13.40548 -13.06505 -12.89417 -12.78011 -12.39986 -11.61473 -11.54866 -11.34439 -11.21137 -10.93722 -10.84993 -10.79208 -10.59717 -10.51398 -10.09837 -9.96459 -9.67584 -9.39022 -9.13490 -8.60375 -7.77832 -6.91041 -5.75645 -3.24931 0.72574 1.23126 2.20655 2.96022 3.19936 3.37485 3.43444 3.44502 3.75886 4.43727 4.54833 4.66733 4.78311 4.85810 5.01664 5.24133 5.26966 5.35908 5.43090 5.53294 5.68525 5.77874 5.89401 6.01348 6.06430 6.11958 6.30436 6.33145 6.34653 6.54841 6.59492 6.67416 6.77167 6.89521 7.23793 7.61510 7.75930 7.88826 8.28200 8.34969 9.17959 9.77574 10.25287 11.27272 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028056 B = 0.004105 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.758133 B = 6818.706811 C = 7122.288617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.255 3.745 3 H 0.091 0.909 4 C 0.219 3.781 5 N -0.478 5.478 6 C -0.012 4.012 7 C -0.049 4.049 8 C 0.007 3.993 9 C -0.105 4.105 10 C -0.115 4.115 11 C -0.124 4.124 12 C -0.116 4.116 13 C -0.108 4.108 14 O -0.202 6.202 15 N -0.571 5.571 16 C 0.148 3.852 17 C -0.271 4.271 18 H 0.071 0.929 19 C 0.010 3.990 20 N -0.899 5.899 21 Si 0.909 3.091 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.278 1.278 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.177 0.823 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.029 0.971 35 H 0.037 0.963 36 H 0.041 0.959 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.706 1.092 19.160 19.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.142 3.858 3 H 0.109 0.891 4 C 0.010 3.990 5 N -0.206 5.206 6 C -0.152 4.152 7 C -0.102 4.102 8 C 0.006 3.994 9 C -0.123 4.123 10 C -0.133 4.133 11 C -0.142 4.142 12 C -0.134 4.134 13 C -0.126 4.126 14 O -0.089 6.089 15 N -0.291 5.291 16 C 0.004 3.996 17 C -0.399 4.399 18 H 0.089 0.911 19 C -0.189 4.189 20 N -0.542 5.542 21 Si 0.738 3.262 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.203 1.203 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.194 0.806 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.470 0.609 18.471 18.539 hybrid contribution 1.138 0.609 -0.166 1.302 sum 2.608 1.218 18.305 18.530 Atomic orbital electron populations 1.22200 0.94993 1.02474 1.01195 1.18875 0.92906 0.94238 0.79779 0.89144 1.29175 0.93011 0.88313 0.88502 1.70459 1.20088 1.14280 1.15744 1.23386 1.01397 0.98339 0.92106 1.21228 1.08674 0.87570 0.92720 1.17678 0.98476 0.94184 0.89021 1.21053 0.99313 0.97894 0.94074 1.21021 0.99134 0.97416 0.95726 1.21227 1.00384 0.92693 0.99897 1.21084 0.99011 0.99098 0.94174 1.21314 0.98487 0.96460 0.96317 1.84490 1.61350 1.38216 1.24890 1.43977 1.57564 1.09361 1.18197 1.21104 0.99409 0.82344 0.96768 1.19272 1.20500 1.10639 0.89533 0.91126 1.24987 0.98449 0.98892 0.96582 1.70128 1.36210 1.31750 1.16129 0.86198 0.81248 0.78681 0.80030 1.21408 1.21562 1.20343 0.92168 0.93668 0.90876 0.80597 0.85412 0.85545 0.85952 0.85712 0.85440 0.95259 0.94410 0.94104 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.18 37.16 0.34 -2.41 16 2 C 0.26 5.41 3.26 -69.08 -0.23 5.18 16 3 H 0.09 1.83 7.86 -51.93 -0.41 1.42 16 4 C 0.22 4.50 7.12 -12.90 -0.09 4.40 16 5 N -0.48 -9.84 8.59 -10.82 -0.09 -9.93 16 6 C -0.01 -0.20 11.29 -17.43 -0.20 -0.40 16 7 C -0.05 -0.82 7.07 -36.54 -0.26 -1.08 16 8 C 0.01 0.10 5.87 -104.98 -0.62 -0.52 16 9 C -0.11 -1.19 9.58 -39.18 -0.38 -1.56 16 10 C -0.12 -1.08 10.03 -39.64 -0.40 -1.47 16 11 C -0.12 -1.12 10.04 -39.50 -0.40 -1.52 16 12 C -0.12 -1.17 10.03 -39.64 -0.40 -1.56 16 13 C -0.11 -1.35 9.73 -39.18 -0.38 -1.73 16 14 O -0.20 -3.84 10.59 4.22 0.04 -3.80 16 15 N -0.57 -14.57 2.81 -174.82 -0.49 -15.06 16 16 C 0.15 3.81 7.87 59.85 0.47 4.28 16 17 C -0.27 -7.45 9.61 -15.06 -0.14 -7.60 16 18 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 19 C 0.01 0.28 5.13 -17.43 -0.09 0.20 16 20 N -0.90 -26.16 10.55 55.49 0.59 -25.57 16 21 Si 0.91 21.85 29.57 -169.99 -5.03 16.82 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.06 1.15 7.67 -51.93 -0.40 0.76 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.18 2.37 7.30 -52.49 -0.38 1.99 16 29 H 0.13 1.22 7.04 -52.49 -0.37 0.85 16 30 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.13 1.59 7.95 -52.49 -0.42 1.17 16 34 H 0.03 0.80 7.36 -51.93 -0.38 0.42 16 35 H 0.04 1.06 7.23 -51.93 -0.38 0.68 16 36 H 0.04 0.98 5.45 -51.93 -0.28 0.70 16 37 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 313.68 15.07 4.73 4.73 Total: -1.00 -31.31 313.68 -7.69 -39.00 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -4.68 Total: -0.39 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -2.76 Total: -5.79 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.00 Total: -50.57 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: 0.04 Total: -3.80 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.31 -7.69 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152214113.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.491 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds