Wall clock time and date at job start Mon Mar 30 2020 01:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47362 * 2 1 4 4 C 1.50709 * 109.47145 * 120.00002 * 2 1 3 5 5 N 1.30352 * 125.48049 * 75.04035 * 4 2 1 6 6 C 1.34137 * 108.90523 * 179.69777 * 5 4 2 7 7 C 1.35775 * 107.51409 * 0.42858 * 6 5 4 8 8 C 1.47822 * 126.59064 * 179.84023 * 7 6 5 9 9 C 1.39584 * 120.13924 * 359.69232 * 8 7 6 10 10 C 1.37954 * 119.84960 * 179.97438 * 9 8 7 11 11 C 1.38356 * 120.14882 * 359.97438 * 10 9 8 12 12 C 1.38350 * 120.29197 * 0.02562 * 11 10 9 13 13 C 1.37963 * 120.14902 * 359.97438 * 12 11 10 14 14 O 1.33998 * 125.48118 * 255.00086 * 4 2 1 15 15 N 1.46498 * 109.47097 * 239.99454 * 2 1 3 16 16 C 1.46498 * 120.00439 * 300.00246 * 15 2 1 17 17 C 1.36940 * 119.99609 * 120.00194 * 15 2 1 18 18 H 1.07999 * 120.00126 * 21.71339 * 17 15 2 19 19 C 1.38814 * 120.00056 * 201.71796 * 17 15 2 20 20 N 1.31615 * 119.99930 * 11.59594 * 19 17 15 21 21 Si 1.86805 * 120.00034 * 191.60431 * 19 17 15 22 22 H 1.48505 * 109.47035 * 89.99271 * 21 19 17 23 23 H 1.48497 * 109.47020 * 209.99321 * 21 19 17 24 24 H 1.48500 * 109.46966 * 329.99480 * 21 19 17 25 25 H 1.09001 * 109.47169 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47298 * 300.00170 * 1 2 3 27 27 H 1.08999 * 109.47085 * 60.00327 * 1 2 3 28 28 H 1.07996 * 126.24645 * 180.29102 * 6 5 4 29 29 H 1.07995 * 120.07025 * 359.97438 * 9 8 7 30 30 H 1.07999 * 119.92692 * 180.02562 * 10 9 8 31 31 H 1.08004 * 119.85204 * 179.72553 * 11 10 9 32 32 H 1.07998 * 119.93086 * 180.02562 * 12 11 10 33 33 H 1.07999 * 120.08044 * 180.02562 * 13 12 11 34 34 H 1.08994 * 109.46799 * 95.34180 * 16 15 2 35 35 H 1.08998 * 109.47291 * 215.33735 * 16 15 2 36 36 H 1.08998 * 109.47150 * 335.34026 * 16 15 2 37 37 H 0.97004 * 120.00051 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 2.0262 -2.0009 1.4146 6 6 2.5540 -2.2707 2.6179 7 6 2.8868 -1.0867 3.1930 8 6 3.4977 -0.8950 4.5253 9 6 3.7832 -1.9988 5.3308 10 6 4.3538 -1.8131 6.5730 11 6 4.6436 -0.5364 7.0207 12 6 4.3631 0.5618 6.2274 13 6 3.7925 0.3901 4.9831 14 8 2.5578 -0.1173 2.3111 15 7 2.0183 -0.6907 -1.1961 16 6 1.6644 -2.0933 -1.4279 17 6 2.8056 -0.0252 -2.0975 18 1 3.3525 0.8541 -1.7909 19 6 2.9006 -0.4808 -3.4053 20 7 2.0703 -1.4036 -3.8427 21 14 4.2072 0.2156 -4.5444 22 1 5.4449 -0.5977 -4.4337 23 1 3.7140 0.1784 -5.9445 24 1 4.5014 1.6195 -4.1603 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.6875 -3.2508 3.0514 29 1 3.5579 -2.9958 4.9822 30 1 4.5756 -2.6662 7.1970 31 1 5.0862 -0.3963 7.9959 32 1 4.5921 1.5556 6.5826 33 1 3.5745 1.2482 4.3645 34 1 0.7914 -2.1449 -2.0785 35 1 2.5015 -2.6057 -1.9019 36 1 1.4369 -2.5727 -0.4758 37 1 2.1369 -1.7222 -4.7564 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152214113.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:21 Heat of formation + Delta-G solvation = 57.794334 kcal Electronic energy + Delta-G solvation = -20154.589923 eV Core-core repulsion = 17091.819351 eV Total energy + Delta-G solvation = -3062.770572 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.22553 -39.93333 -38.18379 -35.68899 -34.45418 -33.17820 -31.90990 -31.17064 -29.03402 -28.03251 -25.80720 -24.48539 -24.23104 -22.86224 -22.09548 -21.23627 -18.87808 -18.68406 -17.66787 -17.27349 -16.95876 -16.65203 -15.97058 -15.66474 -15.28924 -14.85432 -14.72936 -14.37205 -14.20527 -14.08621 -13.84567 -13.23239 -13.16701 -12.89439 -12.71629 -12.58154 -12.32759 -12.29778 -12.24357 -12.00993 -11.96688 -11.88177 -11.09879 -10.76227 -10.71150 -9.93950 -9.00255 -8.94444 -7.86048 -5.38332 -0.32422 0.42865 0.98292 1.44319 1.47474 1.55399 1.60530 1.79816 2.48558 2.88160 3.10495 3.33482 3.51807 3.69447 3.95749 4.01520 4.05567 4.21432 4.27855 4.40048 4.48897 4.50927 4.67217 4.81148 4.87567 4.94752 5.03098 5.08184 5.11185 5.23588 5.36287 5.48623 5.52711 5.54419 5.58277 5.63155 5.73869 5.98837 6.24737 6.83415 7.08147 7.74901 8.20065 9.16273 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028056 B = 0.004105 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.758133 B = 6818.706811 C = 7122.288617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.254 3.746 3 H 0.095 0.905 4 C 0.193 3.807 5 N -0.498 5.498 6 C -0.033 4.033 7 C -0.032 4.032 8 C -0.031 4.031 9 C -0.105 4.105 10 C -0.114 4.114 11 C -0.112 4.112 12 C -0.119 4.119 13 C -0.123 4.123 14 O -0.210 6.210 15 N -0.590 5.590 16 C 0.174 3.826 17 C -0.280 4.280 18 H 0.075 0.925 19 C -0.044 4.044 20 N -0.931 5.931 21 Si 0.974 3.026 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.264 1.264 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.209 0.791 29 H 0.142 0.858 30 H 0.160 0.840 31 H 0.157 0.843 32 H 0.149 0.851 33 H 0.117 0.883 34 H 0.006 0.994 35 H 0.003 0.997 36 H 0.056 0.944 37 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.990 1.526 22.322 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.143 3.857 3 H 0.113 0.887 4 C -0.016 4.016 5 N -0.227 5.227 6 C -0.173 4.173 7 C -0.085 4.085 8 C -0.032 4.032 9 C -0.123 4.123 10 C -0.132 4.132 11 C -0.129 4.129 12 C -0.137 4.137 13 C -0.141 4.141 14 O -0.097 6.097 15 N -0.311 5.311 16 C 0.030 3.970 17 C -0.410 4.410 18 H 0.093 0.907 19 C -0.240 4.240 20 N -0.576 5.576 21 Si 0.801 3.199 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.189 1.189 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.225 0.775 29 H 0.160 0.840 30 H 0.177 0.823 31 H 0.175 0.825 32 H 0.167 0.833 33 H 0.135 0.865 34 H 0.024 0.976 35 H 0.022 0.978 36 H 0.074 0.926 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.749 1.075 21.683 21.883 hybrid contribution 0.816 0.497 -0.813 1.255 sum 3.565 1.571 20.870 21.231 Atomic orbital electron populations 1.22053 0.93012 1.02133 1.02387 1.18991 0.94268 0.94023 0.78456 0.88700 1.28454 0.95437 0.88418 0.89256 1.70325 1.20491 1.14380 1.17464 1.23842 1.02184 0.99968 0.91274 1.21918 1.06470 0.86934 0.93178 1.17848 1.01214 0.95805 0.88311 1.21334 0.98741 0.97759 0.94503 1.21453 0.97793 0.98868 0.95065 1.21719 0.98311 0.92087 1.00808 1.21400 0.98213 1.00947 0.93152 1.21414 0.99341 0.95778 0.97567 1.84445 1.61326 1.38878 1.25013 1.44074 1.58168 1.09239 1.19634 1.20711 0.96831 0.82988 0.96514 1.19622 1.20535 1.10694 0.90123 0.90724 1.25790 1.00506 0.99606 0.98090 1.70287 1.37894 1.33276 1.16181 0.85178 0.78353 0.78518 0.77818 1.21666 1.21621 1.18875 0.93234 0.90517 0.91484 0.77456 0.84049 0.82291 0.82520 0.83336 0.86481 0.97602 0.97791 0.92557 0.94059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 9.18 71.98 0.66 -4.41 16 2 C 0.25 10.93 3.26 44.25 0.14 11.08 16 3 H 0.10 3.90 7.86 -2.39 -0.02 3.88 16 4 C 0.19 8.02 7.12 88.33 0.63 8.65 16 5 N -0.50 -20.68 8.59 -302.86 -2.60 -23.28 16 6 C -0.03 -1.13 11.29 83.77 0.95 -0.18 16 7 C -0.03 -1.07 7.07 24.24 0.17 -0.90 16 8 C -0.03 -0.82 5.87 -20.09 -0.12 -0.94 16 9 C -0.11 -2.09 9.58 22.53 0.22 -1.87 16 10 C -0.11 -1.65 10.03 22.23 0.22 -1.42 16 11 C -0.11 -1.51 10.04 22.32 0.22 -1.29 16 12 C -0.12 -2.03 10.03 22.23 0.22 -1.81 16 13 C -0.12 -2.92 9.73 22.53 0.22 -2.70 16 14 O -0.21 -8.03 10.59 -7.82 -0.08 -8.11 16 15 N -0.59 -30.97 2.81 -707.00 -1.98 -32.95 16 16 C 0.17 9.37 7.87 127.77 1.00 10.38 16 17 C -0.28 -15.77 9.61 84.03 0.81 -14.96 16 18 H 0.07 4.03 7.80 -2.91 -0.02 4.01 16 19 C -0.04 -2.51 5.13 84.86 0.44 -2.07 16 20 N -0.93 -56.02 10.55 21.65 0.23 -55.80 16 21 Si 0.97 45.64 29.57 68.60 2.03 47.66 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 24 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 25 H 0.05 1.92 7.67 -2.39 -0.02 1.90 16 26 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 27 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.21 5.29 7.30 -2.91 -0.02 5.27 16 29 H 0.14 2.30 7.04 -2.91 -0.02 2.28 16 30 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 31 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 32 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 33 H 0.12 2.91 7.95 -2.91 -0.02 2.89 16 34 H 0.01 0.33 7.36 -2.39 -0.02 0.31 16 35 H 0.00 0.19 7.23 -2.39 -0.02 0.18 16 36 H 0.06 2.80 5.45 -2.39 -0.01 2.79 16 37 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -69.82 313.68 4.44 -65.37 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 1.07 Total: 9.55 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 5.79 Total: -2.45 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -4.36 Total: -112.03 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.08 Total: -8.11 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -69.82 4.44 -65.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152214113.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.167 kcal (2) G-P(sol) polarization free energy of solvation -69.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds