Wall clock time and date at job start Mon Mar 30 2020 01:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47217 * 2 1 4 4 C 1.50700 * 109.46922 * 240.00257 * 2 1 3 5 5 N 1.30361 * 125.48525 * 285.02223 * 4 2 1 6 6 C 1.34132 * 108.90935 * 180.02562 * 5 4 2 7 7 C 1.35776 * 107.51671 * 0.02562 * 6 5 4 8 8 C 1.47821 * 126.58632 * 180.02562 * 7 6 5 9 9 C 1.39579 * 120.14300 * 179.70042 * 8 7 6 10 10 C 1.37962 * 119.85085 * 179.71920 * 9 8 7 11 11 C 1.38359 * 120.14323 * 0.53244 * 10 9 8 12 12 C 1.38353 * 120.29512 * 359.76370 * 11 10 9 13 13 C 1.37963 * 120.14385 * 359.95918 * 12 11 10 14 14 O 1.34006 * 125.48491 * 104.72135 * 4 2 1 15 15 N 1.46496 * 109.47455 * 120.00218 * 2 1 3 16 16 C 1.46503 * 119.99885 * 59.99536 * 15 2 1 17 17 C 1.36933 * 120.00372 * 240.00198 * 15 2 1 18 18 H 1.08000 * 119.99996 * 23.18604 * 17 15 2 19 19 C 1.38814 * 120.00029 * 203.19349 * 17 15 2 20 20 N 1.31618 * 120.00030 * 13.54646 * 19 17 15 21 21 Si 1.86799 * 119.99900 * 193.54735 * 19 17 15 22 22 H 1.48496 * 109.47101 * 89.99566 * 21 19 17 23 23 H 1.48501 * 109.47220 * 209.99806 * 21 19 17 24 24 H 1.48498 * 109.47034 * 329.99849 * 21 19 17 25 25 H 1.09005 * 109.47611 * 59.99659 * 1 2 3 26 26 H 1.09001 * 109.47481 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47245 * 299.99709 * 1 2 3 28 28 H 1.07998 * 126.24719 * 180.02562 * 6 5 4 29 29 H 1.07996 * 120.07484 * 0.02562 * 9 8 7 30 30 H 1.07992 * 119.92790 * 180.27525 * 10 9 8 31 31 H 1.07999 * 119.85333 * 179.73972 * 11 10 9 32 32 H 1.08004 * 119.92993 * 179.97438 * 12 11 10 33 33 H 1.08002 * 120.07563 * 180.02562 * 13 12 11 34 34 H 1.09007 * 109.46892 * 95.15672 * 16 15 2 35 35 H 1.08997 * 109.47497 * 335.16202 * 16 15 2 36 36 H 1.08997 * 109.47739 * 215.15989 * 16 15 2 37 37 H 0.97003 * 120.00250 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 7 2.0251 -2.0008 -1.4153 6 6 2.5476 -2.2702 -2.6209 7 6 2.8876 -1.0866 -3.1927 8 6 3.4988 -0.8951 -4.5249 9 6 3.7889 0.3905 -4.9847 10 6 4.3647 0.5619 -6.2267 11 6 4.6444 -0.5363 -7.0204 12 6 4.3537 -1.8129 -6.5731 13 6 3.7831 -1.9986 -5.3308 14 8 2.5529 -0.1168 -2.3133 15 7 2.0183 -0.6906 1.1961 16 6 1.6644 -2.0932 1.4279 17 6 2.8056 -0.0252 2.0975 18 1 2.7698 1.0527 2.1533 19 6 3.6498 -0.7362 2.9394 20 7 3.8982 -2.0068 2.7024 21 14 4.4331 0.1104 4.4088 22 1 3.5450 -0.0273 5.5909 23 1 5.7464 -0.5185 4.7003 24 1 4.6307 1.5501 4.1032 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.6747 -3.2499 -3.0573 29 1 3.5677 1.2487 -4.3676 30 1 4.5937 1.5557 -6.5818 31 1 5.0913 -0.3964 -7.9936 32 1 4.5742 -2.6660 -7.1978 33 1 3.5571 -2.9956 -4.9826 34 1 2.4607 -2.7358 1.0522 35 1 0.7351 -2.3243 0.9073 36 1 1.5340 -2.2633 2.4966 37 1 4.4878 -2.5037 3.2909 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152214199.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:24 Heat of formation + Delta-G solvation = 72.639925 kcal Electronic energy + Delta-G solvation = -20241.096464 eV Core-core repulsion = 17178.969645 eV Total energy + Delta-G solvation = -3062.126819 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.60565 -38.99728 -36.34214 -34.03614 -32.74704 -31.86954 -31.01310 -29.35945 -27.66285 -26.00620 -24.17744 -23.26589 -22.75064 -21.55492 -20.79439 -19.48023 -17.52146 -16.86421 -16.09262 -15.93809 -15.52629 -15.16658 -14.78824 -13.94521 -13.81348 -13.61015 -13.33864 -13.05938 -12.79850 -12.76280 -12.38067 -11.75226 -11.56231 -11.39818 -11.12382 -10.88418 -10.76494 -10.63740 -10.59047 -10.42203 -10.04241 -9.90137 -9.69079 -9.59218 -9.05435 -8.62470 -7.64837 -6.92245 -5.80933 -3.30784 0.82793 1.31169 2.33159 3.09727 3.33769 3.37463 3.41259 3.42425 3.85538 4.41105 4.64402 4.75935 4.85787 4.94868 5.11424 5.33289 5.34021 5.39311 5.41353 5.59864 5.76236 5.82574 5.93756 5.97546 6.15373 6.18820 6.33088 6.38409 6.42443 6.56786 6.64188 6.74071 6.85808 6.96352 7.03398 7.43621 7.73560 7.95997 8.28590 8.46140 9.11962 9.72026 10.22004 11.20246 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024874 B = 0.004358 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.402947 B = 6423.887527 C = 6709.660481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.251 3.749 3 H 0.089 0.911 4 C 0.214 3.786 5 N -0.478 5.478 6 C -0.008 4.008 7 C -0.055 4.055 8 C 0.011 3.989 9 C -0.109 4.109 10 C -0.116 4.116 11 C -0.126 4.126 12 C -0.115 4.115 13 C -0.107 4.107 14 O -0.206 6.206 15 N -0.566 5.566 16 C 0.166 3.834 17 C -0.272 4.272 18 H 0.075 0.925 19 C 0.011 3.989 20 N -0.891 5.891 21 Si 0.910 3.090 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.277 1.277 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.175 0.825 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.041 0.959 35 H 0.011 0.989 36 H 0.038 0.962 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.978 2.304 -16.097 16.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.138 3.862 3 H 0.107 0.893 4 C 0.005 3.995 5 N -0.205 5.205 6 C -0.149 4.149 7 C -0.108 4.108 8 C 0.010 3.990 9 C -0.127 4.127 10 C -0.134 4.134 11 C -0.144 4.144 12 C -0.133 4.133 13 C -0.125 4.125 14 O -0.093 6.093 15 N -0.285 5.285 16 C 0.022 3.978 17 C -0.401 4.401 18 H 0.092 0.908 19 C -0.190 4.190 20 N -0.533 5.533 21 Si 0.739 3.261 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.202 1.202 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.192 0.808 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.059 0.941 35 H 0.029 0.971 36 H 0.056 0.944 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.091 1.771 -15.485 15.725 hybrid contribution 1.093 0.608 0.167 1.262 sum -0.998 2.379 -15.318 15.534 Atomic orbital electron populations 1.22175 0.95157 1.02488 1.01208 1.19326 0.93200 0.95088 0.78544 0.89324 1.29343 0.93563 0.88669 0.87907 1.70429 1.20091 1.14319 1.15635 1.23309 1.01258 0.98221 0.92111 1.21211 1.09049 0.87729 0.92795 1.17692 0.98165 0.94110 0.89048 1.21304 0.98643 0.96478 0.96308 1.21071 0.99034 0.99036 0.94224 1.21204 1.00638 0.92708 0.99887 1.21012 0.99162 0.97371 0.95731 1.21053 0.99434 0.97928 0.94077 1.84511 1.61703 1.38253 1.24859 1.44287 1.57049 1.11034 1.16167 1.20831 0.95632 0.83414 0.97917 1.19341 1.17823 0.91644 1.11329 0.90753 1.25189 0.96991 0.96329 1.00488 1.70129 1.37467 1.08250 1.37466 0.86179 0.78463 0.78865 0.82559 1.21119 1.21631 1.20237 0.93311 0.92026 0.91144 0.80809 0.85506 0.85792 0.86029 0.85612 0.85454 0.94065 0.97079 0.94374 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.16 37.15 0.34 -2.30 16 2 C 0.25 5.34 3.26 -69.09 -0.22 5.12 16 3 H 0.09 1.81 7.87 -51.93 -0.41 1.40 16 4 C 0.21 4.64 7.13 -12.90 -0.09 4.55 16 5 N -0.48 -10.51 9.60 -10.82 -0.10 -10.62 16 6 C -0.01 -0.15 11.29 -17.43 -0.20 -0.35 16 7 C -0.05 -1.00 7.07 -36.54 -0.26 -1.26 16 8 C 0.01 0.16 5.87 -104.98 -0.62 -0.46 16 9 C -0.11 -1.49 9.73 -39.18 -0.38 -1.87 16 10 C -0.12 -1.27 10.03 -39.64 -0.40 -1.66 16 11 C -0.13 -1.25 10.04 -39.49 -0.40 -1.65 16 12 C -0.11 -1.18 10.03 -39.64 -0.40 -1.58 16 13 C -0.11 -1.32 9.57 -39.19 -0.38 -1.70 16 14 O -0.21 -4.19 10.59 4.20 0.04 -4.14 16 15 N -0.57 -14.33 2.80 -174.82 -0.49 -14.82 16 16 C 0.17 4.24 7.36 59.85 0.44 4.68 16 17 C -0.27 -7.40 9.58 -15.06 -0.14 -7.54 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C 0.01 0.30 5.09 -17.43 -0.09 0.21 16 20 N -0.89 -26.15 10.75 55.49 0.60 -25.55 16 21 Si 0.91 21.56 29.57 -169.99 -5.03 16.53 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.12 6.67 -51.93 -0.35 0.77 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.17 2.62 7.30 -52.49 -0.38 2.24 16 29 H 0.13 1.71 7.95 -52.49 -0.42 1.29 16 30 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.13 1.37 7.04 -52.49 -0.37 1.01 16 34 H 0.04 1.17 7.10 -51.92 -0.37 0.80 16 35 H 0.01 0.25 6.37 -51.93 -0.33 -0.08 16 36 H 0.04 1.02 7.37 -51.93 -0.38 0.64 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 314.12 15.07 4.73 4.73 Total: -1.00 -31.64 314.12 -7.70 -39.34 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -4.67 Total: 0.33 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -2.79 Total: -5.81 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.00 Total: -50.99 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: 0.04 Total: -4.14 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.64 -7.70 -39.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152214199.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.980 kcal (2) G-P(sol) polarization free energy of solvation -31.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds