Wall clock time and date at job start Mon Mar 30 2020 01:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47242 * 2 1 4 4 N 1.46495 * 109.47233 * 180.02562 * 3 2 1 5 5 C 1.46500 * 120.00635 * 89.99768 * 4 3 2 6 6 C 1.50703 * 109.47101 * 89.99360 * 5 4 3 7 7 C 1.38361 * 119.85073 * 269.73090 * 6 5 4 8 8 C 1.37948 * 120.14922 * 179.77011 * 7 6 5 9 9 C 1.39631 * 119.84513 * 0.52487 * 8 7 6 10 10 C 1.43199 * 120.14614 * 179.70637 * 9 8 7 11 11 N 9.36423 * 114.27754 * 337.63454 * 2 1 3 12 12 C 1.39626 * 119.70031 * 359.72820 * 9 8 7 13 13 C 1.37945 * 119.85016 * 359.97438 * 12 9 8 14 14 C 1.34779 * 119.99735 * 269.72101 * 4 3 2 15 15 O 1.21686 * 120.00034 * 179.97438 * 14 4 3 16 16 C 1.46377 * 120.00189 * 0.02562 * 14 4 3 17 17 H 1.07999 * 119.99822 * 355.05783 * 16 14 4 18 18 C 1.40046 * 120.00346 * 175.06064 * 16 14 4 19 19 N 1.30671 * 119.99607 * 6.22281 * 18 16 14 20 20 Si 1.86795 * 120.00237 * 186.22764 * 18 16 14 21 21 H 1.48494 * 109.47180 * 94.97912 * 20 18 16 22 22 H 1.48499 * 109.47119 * 214.98495 * 20 18 16 23 23 H 1.48501 * 109.46813 * 334.98071 * 20 18 16 24 24 H 1.08999 * 109.46985 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47357 * 300.00347 * 1 2 3 26 26 H 1.08997 * 109.47162 * 60.00522 * 1 2 3 27 27 H 1.08998 * 109.47357 * 239.99653 * 2 1 3 28 28 H 1.09005 * 109.47017 * 119.99200 * 2 1 3 29 29 H 1.08998 * 109.47228 * 59.99574 * 3 2 1 30 30 H 1.09005 * 109.46461 * 299.99540 * 3 2 1 31 31 H 1.08996 * 109.47339 * 209.99882 * 5 4 3 32 32 H 1.09006 * 109.46373 * 329.99837 * 5 4 3 33 33 H 1.08004 * 119.92226 * 359.97438 * 7 6 5 34 34 H 1.07993 * 120.07356 * 180.25587 * 8 7 6 35 35 H 1.08009 * 120.07610 * 179.97438 * 12 9 8 36 36 H 1.07997 * 119.93234 * 179.97438 * 13 12 9 37 37 H 0.97002 * 119.99771 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2371 1.4426 -1.2696 6 6 4.4880 2.8635 -1.7046 7 6 3.5658 3.5109 -2.5077 8 6 3.7870 4.8131 -2.9056 9 6 4.9499 5.4741 -2.5051 10 6 5.1890 6.8238 -2.9197 11 7 5.3801 7.8940 -3.2481 12 6 5.8787 4.8130 -1.6990 13 6 5.6420 3.5129 -1.3033 14 6 4.1793 1.4480 1.1663 15 8 5.3961 1.4475 1.1659 16 6 3.4479 1.4534 2.4343 17 1 2.3709 1.5336 2.4361 18 6 4.1447 1.3547 3.6451 19 7 5.4512 1.3803 3.6509 20 14 3.2066 1.1863 5.2516 21 1 3.0909 -0.2503 5.6090 22 1 3.9336 1.9072 6.3272 23 1 1.8494 1.7684 5.0955 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9562 -0.8901 31 1 5.1895 0.9288 -1.1396 32 1 3.6476 0.9288 -2.0290 33 1 2.6693 2.9966 -2.8210 34 1 3.0645 5.3186 -3.5291 35 1 6.7805 5.3184 -1.3860 36 1 6.3597 3.0001 -0.6801 37 1 5.9338 1.3123 4.4896 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153550427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:08 Heat of formation + Delta-G solvation = -9.731481 kcal Electronic energy + Delta-G solvation = -20200.703472 eV Core-core repulsion = 17135.004760 eV Total energy + Delta-G solvation = -3065.698711 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.68968 -39.42599 -37.55915 -36.45282 -34.72642 -33.92613 -32.20830 -31.97156 -29.03194 -27.41275 -26.11937 -23.65793 -23.43527 -22.38558 -20.83825 -19.84715 -18.33812 -17.68305 -16.75915 -16.43816 -16.41714 -15.87260 -15.50512 -15.23115 -15.02594 -14.86597 -14.43185 -14.35505 -13.98164 -13.86652 -13.65880 -13.27568 -13.09004 -12.85438 -12.80011 -12.67842 -12.61881 -12.39704 -12.09993 -11.97470 -11.85393 -11.79673 -11.34052 -10.87012 -9.91483 -9.90120 -9.52059 -8.99579 -8.22332 -6.72946 -0.20289 0.47476 1.40977 1.41615 1.55898 1.57387 1.90056 2.27279 2.54348 2.80494 2.86419 3.18400 3.68396 3.91038 4.00989 4.04334 4.27861 4.34447 4.45079 4.50148 4.63309 4.73049 4.79298 4.85615 4.94709 4.97984 5.12042 5.20568 5.32191 5.32692 5.38111 5.43070 5.49737 5.62523 5.71836 5.90522 5.96825 6.24683 6.40167 6.51676 6.97237 7.52111 8.57050 8.76445 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016229 B = 0.005467 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.861935 B = 5120.832939 C = 6096.646782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.126 3.874 4 N -0.635 5.635 5 C 0.155 3.845 6 C -0.066 4.066 7 C -0.104 4.104 8 C -0.060 4.060 9 C -0.047 4.047 10 C 0.285 3.715 11 N -0.465 5.465 12 C -0.074 4.074 13 C -0.116 4.116 14 C 0.546 3.454 15 O -0.621 6.621 16 C -0.563 4.563 17 H 0.087 0.913 18 C 0.034 3.966 19 N -0.820 5.820 20 Si 0.980 3.020 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.248 1.248 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.036 0.964 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.108 0.892 33 H 0.165 0.835 34 H 0.163 0.837 35 H 0.133 0.867 36 H 0.105 0.895 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.867 -0.034 -10.711 14.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C 0.003 3.997 4 N -0.370 5.370 5 C 0.032 3.968 6 C -0.069 4.069 7 C -0.122 4.122 8 C -0.080 4.080 9 C -0.051 4.051 10 C -0.029 4.029 11 N -0.141 5.141 12 C -0.094 4.094 13 C -0.135 4.135 14 C 0.352 3.648 15 O -0.507 6.507 16 C -0.600 4.600 17 H 0.105 0.895 18 C -0.181 4.181 19 N -0.450 5.450 20 Si 0.801 3.199 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.171 1.171 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.126 0.874 33 H 0.182 0.818 34 H 0.180 0.820 35 H 0.151 0.849 36 H 0.123 0.877 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.758 1.612 -11.136 14.259 hybrid contribution 0.394 -0.545 1.337 1.496 sum -8.365 1.068 -9.799 12.927 Atomic orbital electron populations 1.21646 0.93757 1.02046 1.02330 1.21869 0.96957 0.97432 1.01179 1.21460 0.79324 0.96600 1.02320 1.47933 1.06406 1.78446 1.04210 1.20183 0.97860 0.91835 0.86910 1.20842 0.93669 0.97806 0.94579 1.21247 0.99450 0.94296 0.97207 1.21415 0.94669 0.94234 0.97659 1.16007 0.98709 0.86370 1.04020 1.25802 0.92331 0.92575 0.92201 1.81220 1.09333 1.12728 1.10856 1.21182 0.98774 0.94036 0.95450 1.21086 0.98502 0.94880 0.99016 1.18477 0.86574 0.75722 0.84059 1.90541 1.15961 1.56832 1.87397 1.21470 0.94917 1.53535 0.90049 0.89455 1.26799 0.95340 0.91668 1.04278 1.70179 1.09378 1.37047 1.28392 0.85249 0.79313 0.79041 0.76290 1.19078 1.20274 1.17132 0.92294 0.93140 0.90910 0.91836 0.94534 0.92084 0.89267 0.92940 0.87420 0.81769 0.81957 0.84883 0.87674 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.91 71.98 0.71 -2.17 16 2 C -0.14 -3.77 6.26 30.59 0.19 -3.58 16 3 C 0.13 3.90 5.16 86.38 0.45 4.34 16 4 N -0.64 -25.33 2.46 -831.25 -2.04 -27.37 16 5 C 0.16 5.14 5.52 85.63 0.47 5.61 16 6 C -0.07 -1.98 5.47 -19.80 -0.11 -2.09 16 7 C -0.10 -2.19 9.68 22.23 0.22 -1.98 16 8 C -0.06 -1.18 9.76 22.54 0.22 -0.96 16 9 C -0.05 -1.16 5.73 -21.36 -0.12 -1.28 16 10 C 0.29 7.51 15.33 88.34 1.35 8.87 16 11 N -0.47 -14.00 18.54 19.00 0.35 -13.65 16 12 C -0.07 -2.11 9.76 22.54 0.22 -1.89 16 13 C -0.12 -3.93 9.68 22.23 0.22 -3.72 16 14 C 0.55 29.24 7.61 86.36 0.66 29.89 16 15 O -0.62 -38.42 14.11 -4.30 -0.06 -38.48 16 16 C -0.56 -30.17 8.76 24.83 0.22 -29.96 16 17 H 0.09 4.24 5.95 -2.91 -0.02 4.23 16 18 C 0.03 1.85 5.49 85.30 0.47 2.32 16 19 N -0.82 -48.82 11.85 21.83 0.26 -48.56 16 20 Si 0.98 40.16 29.56 68.60 2.03 42.19 16 21 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 22 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 24 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.06 2.12 6.02 -2.39 -0.01 2.11 16 30 H 0.09 2.05 8.07 -2.38 -0.02 2.03 16 31 H 0.05 2.07 7.36 -2.39 -0.02 2.05 16 32 H 0.11 2.61 8.01 -2.38 -0.02 2.59 16 33 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 34 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 35 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 36 H 0.11 4.35 7.54 -2.91 -0.02 4.33 16 37 H 0.27 14.76 8.29 -92.71 -0.77 13.99 16 Total: -1.00 -72.86 328.08 6.77 -66.09 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 1.07 Total: 16.37 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 5.16 Total: 3.41 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -1.43 Total: -89.58 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -0.06 Total: -38.48 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -72.86 6.77 -66.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153550427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.362 kcal (2) G-P(sol) polarization free energy of solvation -72.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds