Wall clock time and date at job start Mon Mar 30 2020 01:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47220 * 2 1 4 4 C 1.34772 * 120.00176 * 275.85378 * 3 2 1 5 5 O 1.21684 * 119.99937 * 179.97438 * 4 3 2 6 6 C 1.46368 * 120.00072 * 359.97438 * 4 3 2 7 7 H 1.08004 * 120.00037 * 0.02562 * 6 4 3 8 8 C 1.40050 * 119.99892 * 180.02562 * 6 4 3 9 9 N 1.30668 * 120.00109 * 0.02562 * 8 6 4 10 10 Si 1.86806 * 120.00099 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47044 * 0.02562 * 10 8 6 12 12 H 1.48492 * 109.47097 * 120.00175 * 10 8 6 13 13 H 1.48495 * 109.47189 * 240.00649 * 10 8 6 14 14 C 1.46502 * 119.99742 * 95.84815 * 3 2 1 15 15 H 1.08993 * 109.47465 * 197.45850 * 14 3 2 16 16 C 1.53004 * 109.47289 * 317.46253 * 14 3 2 17 17 C 1.50710 * 109.46908 * 77.45669 * 14 3 2 18 18 C 1.38360 * 119.84634 * 330.87603 * 17 14 3 19 19 C 1.37946 * 120.14786 * 179.76273 * 18 17 14 20 20 C 1.39630 * 119.84917 * 0.51193 * 19 18 17 21 21 C 1.43195 * 120.15525 * 179.76699 * 20 19 18 22 22 N 7.73009 * 154.80392 * 93.83936 * 2 1 3 23 23 C 1.39637 * 119.69627 * 359.74187 * 20 19 18 24 24 C 1.37947 * 119.84467 * 0.02562 * 23 20 19 25 25 H 1.08997 * 109.46904 * 299.99759 * 1 2 3 26 26 H 1.09001 * 109.47259 * 59.99732 * 1 2 3 27 27 H 1.09000 * 109.46957 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47248 * 240.00393 * 2 1 3 29 29 H 1.09001 * 109.47259 * 120.00268 * 2 1 3 30 30 H 0.97001 * 119.99836 * 179.97438 * 9 8 6 31 31 H 1.08996 * 109.47392 * 180.02562 * 16 14 3 32 32 H 1.08997 * 109.46621 * 299.99647 * 16 14 3 33 33 H 1.08993 * 109.47196 * 59.99432 * 16 14 3 34 34 H 1.08000 * 119.92851 * 0.02562 * 18 17 14 35 35 H 1.07999 * 120.07576 * 180.27081 * 19 18 17 36 36 H 1.07998 * 120.07963 * 179.97438 * 23 20 19 37 37 H 1.08005 * 119.92008 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1308 2.0563 -1.1611 5 8 2.5360 3.2037 -1.1610 6 6 1.7655 1.4092 -2.4221 7 1 1.4055 0.3910 -2.4222 8 6 1.8828 2.1106 -3.6287 9 7 2.3189 3.3423 -3.6287 10 14 1.4160 1.2851 -5.2381 11 1 0.9541 -0.1003 -4.9681 12 1 0.3240 2.0523 -5.8893 13 1 2.5980 1.2471 -6.1360 14 6 2.3844 2.0287 1.2622 15 1 2.4220 3.1085 1.1191 16 6 1.3414 1.6916 2.3296 17 6 3.7365 1.5335 1.7071 18 6 4.1528 0.2610 1.3583 19 6 5.3912 -0.1968 1.7580 20 6 6.2208 0.6233 2.5254 21 6 7.5055 0.1529 2.9481 22 7 8.5246 -0.2204 3.2834 23 6 5.7921 1.9046 2.8782 24 6 4.5532 2.3513 2.4676 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.4005 3.8279 -4.4644 31 1 1.6135 2.1737 3.2686 32 1 0.3635 2.0497 2.0078 33 1 1.3038 0.6118 2.4727 34 1 3.5085 -0.3739 0.7681 35 1 5.7167 -1.1887 1.4814 36 1 6.4286 2.5440 3.4719 37 1 4.2206 3.3423 2.7395 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153648727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:28 Heat of formation + Delta-G solvation = 2.150812 kcal Electronic energy + Delta-G solvation = -20545.259800 eV Core-core repulsion = 17480.076343 eV Total energy + Delta-G solvation = -3065.183456 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.00833 -39.47079 -37.63123 -36.54411 -34.60697 -33.73201 -31.95841 -30.83785 -30.30527 -28.14800 -25.36043 -24.42103 -23.25511 -22.81462 -20.49773 -19.85011 -18.38454 -17.75018 -16.90058 -16.75390 -15.94673 -15.77768 -15.49322 -15.09152 -14.89084 -14.46850 -14.40013 -14.22693 -14.18935 -13.78700 -13.72961 -13.42861 -13.20429 -13.16043 -12.86550 -12.70389 -12.60419 -12.32550 -12.21308 -11.95296 -11.81040 -11.71316 -11.41673 -10.88893 -9.91289 -9.73133 -9.60451 -9.03801 -8.21754 -6.73920 -0.17697 0.46620 1.41247 1.42819 1.58571 1.58793 1.92909 2.26813 2.53973 2.81726 2.87416 2.99880 3.65869 3.90912 3.97556 4.00979 4.32495 4.34351 4.42627 4.51725 4.60419 4.73090 4.79090 4.84282 4.93371 5.01535 5.09720 5.16603 5.20003 5.30909 5.36746 5.41972 5.42600 5.64352 5.68452 5.89344 5.92788 6.24562 6.41768 6.55191 6.96888 7.52407 8.57094 8.76514 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019540 B = 0.005242 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.596112 B = 5340.192663 C = 5817.353467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.114 3.886 3 N -0.631 5.631 4 C 0.546 3.454 5 O -0.631 6.631 6 C -0.558 4.558 7 H 0.092 0.908 8 C 0.031 3.969 9 N -0.823 5.823 10 Si 0.984 3.016 11 H -0.244 1.244 12 H -0.273 1.273 13 H -0.274 1.274 14 C 0.172 3.828 15 H 0.064 0.936 16 C -0.140 4.140 17 C -0.057 4.057 18 C -0.128 4.128 19 C -0.063 4.063 20 C -0.054 4.054 21 C 0.285 3.715 22 N -0.467 5.467 23 C -0.060 4.060 24 C -0.123 4.123 25 H 0.059 0.941 26 H 0.034 0.966 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.270 0.730 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.143 0.857 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.740 -8.141 10.878 13.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.008 4.008 3 N -0.366 5.366 4 C 0.352 3.648 5 O -0.518 6.518 6 C -0.595 4.595 7 H 0.110 0.890 8 C -0.184 4.184 9 N -0.453 5.453 10 Si 0.805 3.195 11 H -0.167 1.167 12 H -0.198 1.198 13 H -0.199 1.199 14 C 0.067 3.933 15 H 0.083 0.917 16 C -0.198 4.198 17 C -0.059 4.059 18 C -0.146 4.146 19 C -0.083 4.083 20 C -0.057 4.057 21 C -0.029 4.029 22 N -0.143 5.143 23 C -0.080 4.080 24 C -0.142 4.142 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.161 0.839 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.091 -7.967 11.325 13.847 hybrid contribution -0.459 0.381 -1.178 1.321 sum -0.368 -7.586 10.147 12.674 Atomic orbital electron populations 1.22243 0.96355 1.02226 1.01554 1.21511 0.94448 0.82709 1.02159 1.47903 1.69385 1.14454 1.04882 1.18535 0.77224 0.84974 0.84116 1.90552 1.53216 1.20913 1.87139 1.21506 1.46421 1.01230 0.90335 0.88985 1.26874 0.92305 0.94708 1.04510 1.70201 1.35186 1.11381 1.28506 0.85159 0.78255 0.79713 0.76401 1.16671 1.19834 1.19908 1.19729 0.91081 0.97301 0.85187 0.91737 1.22078 0.97302 1.03106 0.97304 1.20840 0.96586 0.94322 0.94149 1.21401 0.96808 0.96247 1.00106 1.21331 0.92645 0.99901 0.94451 1.16027 0.88249 0.96453 1.04997 1.25813 0.92527 0.92345 0.92178 1.81240 1.12491 1.09624 1.10937 1.21297 0.95723 0.93430 0.97590 1.21108 0.93869 1.00495 0.98710 0.92222 0.94669 0.90171 0.91685 0.88767 0.91997 0.89993 0.92608 0.90514 0.83913 0.83281 0.82935 0.83941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.63 9.90 71.98 0.71 -3.92 16 2 C 0.11 3.49 3.46 86.38 0.30 3.79 16 3 N -0.63 -25.16 2.07 -807.05 -1.67 -26.83 16 4 C 0.55 29.48 7.57 86.36 0.65 30.14 16 5 O -0.63 -40.34 14.43 -4.30 -0.06 -40.40 16 6 C -0.56 -29.69 8.22 24.83 0.20 -29.49 16 7 H 0.09 4.36 5.91 -2.91 -0.02 4.35 16 8 C 0.03 1.66 5.50 85.31 0.47 2.13 16 9 N -0.82 -49.31 11.83 21.84 0.26 -49.05 16 10 Si 0.98 39.89 29.56 68.60 2.03 41.92 16 11 H -0.24 -9.00 7.11 99.48 0.71 -8.29 16 12 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 13 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 14 C 0.17 5.82 2.80 44.25 0.12 5.94 16 15 H 0.06 2.67 7.04 -2.39 -0.02 2.65 16 16 C -0.14 -3.43 7.91 71.98 0.57 -2.86 16 17 C -0.06 -1.66 5.04 -19.80 -0.10 -1.76 16 18 C -0.13 -3.42 8.89 22.23 0.20 -3.22 16 19 C -0.06 -1.45 9.76 22.54 0.22 -1.23 16 20 C -0.05 -1.25 5.73 -21.36 -0.12 -1.37 16 21 C 0.29 7.19 15.33 88.33 1.35 8.54 16 22 N -0.47 -13.60 18.54 19.00 0.35 -13.24 16 23 C -0.06 -1.31 9.76 22.54 0.22 -1.10 16 24 C -0.12 -3.10 9.68 22.23 0.22 -2.88 16 25 H 0.06 1.54 6.11 -2.39 -0.01 1.53 16 26 H 0.03 1.21 7.50 -2.39 -0.02 1.20 16 27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.06 2.13 6.44 -2.39 -0.02 2.12 16 29 H 0.09 2.19 5.12 -2.39 -0.01 2.18 16 30 H 0.27 14.80 8.29 -92.71 -0.77 14.03 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 1.46 7.25 -2.39 -0.02 1.44 16 33 H 0.08 1.59 6.68 -2.39 -0.02 1.57 16 34 H 0.14 3.72 4.44 -2.91 -0.01 3.71 16 35 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -74.02 312.52 7.02 -67.00 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 1.10 Total: 17.90 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 5.02 Total: 2.71 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -1.06 Total: -89.12 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -0.06 Total: -40.40 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -74.02 7.02 -67.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153648727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.148 kcal (2) G-P(sol) polarization free energy of solvation -74.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds