Wall clock time and date at job start Mon Mar 30 2020 01:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46925 * 2 1 4 4 C 1.34782 * 119.99645 * 84.01889 * 3 2 1 5 5 O 1.21684 * 119.99813 * 179.72310 * 4 3 2 6 6 C 1.46374 * 120.00197 * 359.97438 * 4 3 2 7 7 H 1.08001 * 119.99690 * 0.02562 * 6 4 3 8 8 C 1.40046 * 120.00350 * 180.02562 * 6 4 3 9 9 N 1.30668 * 119.99575 * 359.97438 * 8 6 4 10 10 Si 1.86797 * 120.00330 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47210 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47428 * 119.99698 * 10 8 6 13 13 H 1.48498 * 109.46942 * 240.00223 * 10 8 6 14 14 C 1.46491 * 120.00482 * 264.01429 * 3 2 1 15 15 H 1.08999 * 109.47236 * 158.24014 * 14 3 2 16 16 C 1.53006 * 109.47032 * 38.24696 * 14 3 2 17 17 C 1.50696 * 109.47487 * 278.24397 * 14 3 2 18 18 C 1.38363 * 119.84520 * 43.87172 * 17 14 3 19 19 C 1.37949 * 120.15268 * 179.76162 * 18 17 14 20 20 C 1.39633 * 119.84287 * 0.51420 * 19 18 17 21 21 C 1.43198 * 120.14800 * 179.76366 * 20 19 18 22 22 N 7.80782 * 157.21472 * 272.77733 * 2 1 3 23 23 C 1.39635 * 119.69906 * 359.74391 * 20 19 18 24 24 C 1.37947 * 119.84836 * 359.97438 * 23 20 19 25 25 H 1.09005 * 109.46729 * 299.99606 * 1 2 3 26 26 H 1.08997 * 109.47226 * 59.99335 * 1 2 3 27 27 H 1.08997 * 109.47274 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46467 * 240.00715 * 2 1 3 29 29 H 1.08997 * 109.47226 * 120.00665 * 2 1 3 30 30 H 0.97003 * 120.00059 * 179.97438 * 9 8 6 31 31 H 1.09004 * 109.46504 * 300.00215 * 16 14 3 32 32 H 1.08996 * 109.47014 * 59.99809 * 16 14 3 33 33 H 1.08997 * 109.47207 * 180.02562 * 16 14 3 34 34 H 1.08007 * 119.92414 * 0.02681 * 18 17 14 35 35 H 1.07995 * 120.08004 * 180.23138 * 19 18 17 36 36 H 1.07998 * 120.07670 * 179.97438 * 23 20 19 37 37 H 1.07995 * 119.92694 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1282 2.0571 1.1609 5 8 2.5386 3.2026 1.1615 6 6 1.7592 1.4112 2.4216 7 1 1.3993 0.3930 2.4215 8 6 1.8729 2.1136 3.6278 9 7 2.3089 3.3454 3.6279 10 14 1.4027 1.2892 5.2367 11 1 0.9427 -0.0968 4.9668 12 1 2.5825 1.2530 6.1378 13 1 0.3083 2.0560 5.8845 14 6 2.3872 2.0278 -1.2617 15 1 2.3500 3.1103 -1.1397 16 6 1.4070 1.6043 -2.3575 17 6 3.7834 1.6136 -1.6491 18 6 4.1647 0.2884 -1.5362 19 6 5.4397 -0.0986 -1.8937 20 6 6.3494 0.8524 -2.3602 21 6 7.6761 0.4587 -2.7283 22 7 8.7286 0.1465 -3.0203 23 6 5.9595 2.1890 -2.4664 24 6 4.6796 2.5611 -2.1110 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.3873 3.8321 4.4633 31 1 1.4441 0.5217 -2.4794 32 1 0.3972 1.9039 -2.0773 33 1 1.6817 2.0850 -3.2964 34 1 3.4613 -0.4455 -1.1714 35 1 5.7349 -1.1340 -1.8087 36 1 6.6583 2.9297 -2.8261 37 1 4.3765 3.5944 -2.1931 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153648843.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:31 Heat of formation + Delta-G solvation = 19.183237 kcal Electronic energy + Delta-G solvation = -20547.408854 eV Core-core repulsion = 17482.963979 eV Total energy + Delta-G solvation = -3064.444875 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.75046 -37.96445 -36.35961 -34.89671 -32.70677 -32.32511 -30.92265 -29.61727 -28.86801 -26.21821 -24.23163 -23.11325 -22.08665 -21.32325 -18.92299 -18.77510 -16.62079 -15.97890 -15.69572 -15.26463 -14.67774 -14.37270 -14.19974 -13.93553 -13.60087 -13.33592 -13.00381 -12.95783 -12.61647 -12.49114 -12.37832 -12.13420 -11.98886 -11.69422 -11.44735 -11.18653 -11.09487 -10.88155 -10.84746 -10.56803 -10.28760 -10.21915 -10.00468 -8.89835 -8.87276 -8.57733 -7.63267 -7.35801 -6.23321 -4.67874 0.91040 1.50774 2.68808 3.03574 3.09703 3.18813 3.22027 3.92638 3.98343 4.07070 4.46125 4.50560 4.96200 4.97664 5.02148 5.43774 5.49184 5.58685 5.62292 5.70277 5.72445 5.84791 5.95362 6.02069 6.03186 6.14751 6.24551 6.28975 6.38183 6.43576 6.54781 6.59139 6.84209 6.89127 6.98931 7.41293 7.50665 7.57361 8.08609 8.30419 8.99106 9.35906 10.53021 10.71860 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018882 B = 0.005353 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.536279 B = 5229.162250 C = 5769.259304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.121 3.879 3 N -0.634 5.634 4 C 0.559 3.441 5 O -0.575 6.575 6 C -0.539 4.539 7 H 0.073 0.927 8 C 0.088 3.912 9 N -0.766 5.766 10 Si 0.903 3.097 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.277 1.277 14 C 0.176 3.824 15 H 0.098 0.902 16 C -0.152 4.152 17 C -0.039 4.039 18 C -0.115 4.115 19 C -0.071 4.071 20 C -0.051 4.051 21 C 0.266 3.734 22 N -0.437 5.437 23 C -0.070 4.070 24 C -0.111 4.111 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.267 0.733 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.332 -5.835 -10.078 11.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.003 4.003 3 N -0.371 5.371 4 C 0.365 3.635 5 O -0.458 6.458 6 C -0.575 4.575 7 H 0.091 0.909 8 C -0.132 4.132 9 N -0.395 5.395 10 Si 0.728 3.272 11 H -0.187 1.187 12 H -0.202 1.202 13 H -0.202 1.202 14 C 0.071 3.929 15 H 0.116 0.884 16 C -0.210 4.210 17 C -0.042 4.042 18 C -0.133 4.133 19 C -0.092 4.092 20 C -0.054 4.054 21 C -0.049 4.049 22 N -0.113 5.113 23 C -0.090 4.090 24 C -0.130 4.130 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.155 0.845 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.569 -5.511 -10.401 11.784 hybrid contribution -0.593 -0.356 1.038 1.248 sum -0.024 -5.867 -9.363 11.049 Atomic orbital electron populations 1.22314 0.97506 1.00463 1.02719 1.21258 0.93484 0.84815 1.00787 1.48182 1.70290 1.13299 1.05329 1.18260 0.77790 0.85362 0.82103 1.90599 1.50782 1.18685 1.85688 1.21016 1.46489 1.00287 0.89728 0.90877 1.25723 0.92989 0.94324 1.00181 1.70022 1.33059 1.09122 1.27260 0.86388 0.78668 0.80191 0.81990 1.18713 1.20208 1.20206 1.19626 0.88063 0.99656 0.85582 0.88364 1.22173 0.99587 1.01546 0.97705 1.20917 0.97462 0.93198 0.92611 1.21235 0.95977 0.96624 0.99449 1.21109 0.92895 0.98598 0.96562 1.15953 0.86912 0.94811 1.07772 1.25839 0.92829 0.93228 0.93016 1.81206 1.11679 1.08259 1.10139 1.21080 0.96447 0.93707 0.97788 1.21018 0.92651 0.99995 0.99335 0.91322 0.93225 0.93429 0.92632 0.90712 0.92184 0.92342 0.91673 0.92326 0.84495 0.85484 0.85435 0.84976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 9.93 37.16 0.37 -2.20 16 2 C 0.12 1.95 4.06 -4.04 -0.02 1.93 16 3 N -0.63 -12.60 2.21 -169.08 -0.37 -12.98 16 4 C 0.56 14.62 7.57 -12.98 -0.10 14.52 16 5 O -0.58 -17.40 14.48 5.20 0.08 -17.33 16 6 C -0.54 -14.13 8.21 -35.63 -0.29 -14.43 16 7 H 0.07 1.75 5.90 -52.49 -0.31 1.44 16 8 C 0.09 2.33 5.50 -17.37 -0.10 2.24 16 9 N -0.77 -22.10 11.83 55.55 0.66 -21.44 16 10 Si 0.90 19.38 29.56 -169.99 -5.02 14.36 16 11 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 12 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 13 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 14 C 0.18 2.97 2.77 -69.09 -0.19 2.78 16 15 H 0.10 1.91 7.00 -51.93 -0.36 1.55 16 16 C -0.15 -1.97 7.95 37.16 0.30 -1.67 16 17 C -0.04 -0.60 4.95 -104.53 -0.52 -1.12 16 18 C -0.11 -1.59 9.14 -39.64 -0.36 -1.96 16 19 C -0.07 -0.89 9.76 -39.17 -0.38 -1.27 16 20 C -0.05 -0.66 5.73 -106.93 -0.61 -1.27 16 21 C 0.27 3.67 15.33 -22.48 -0.34 3.32 16 22 N -0.44 -6.79 18.54 41.84 0.78 -6.01 16 23 C -0.07 -0.88 9.76 -39.17 -0.38 -1.26 16 24 C -0.11 -1.56 9.65 -39.64 -0.38 -1.94 16 25 H 0.07 1.22 7.48 -51.93 -0.39 0.83 16 26 H 0.05 0.69 6.13 -51.93 -0.32 0.37 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.73 4.51 -51.93 -0.23 0.49 16 29 H 0.07 1.29 6.45 -51.93 -0.33 0.96 16 30 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 31 H 0.06 0.68 6.62 -51.93 -0.34 0.34 16 32 H 0.06 0.87 7.00 -51.93 -0.36 0.51 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.14 1.78 4.68 -52.48 -0.25 1.54 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.13 1.70 8.00 -52.49 -0.42 1.28 16 LS Contribution 312.70 15.07 4.71 4.71 Total: -1.00 -32.44 312.70 -6.34 -38.78 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -4.15 Total: 2.22 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -3.01 Total: -2.32 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 1.06 Total: -40.43 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.08 Total: -17.33 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.44 -6.34 -38.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153648843.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.966 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds