Wall clock time and date at job start Mon Mar 30 2020 01:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46925 * 2 1 4 4 C 1.34782 * 119.99645 * 84.01889 * 3 2 1 5 5 O 1.21684 * 119.99813 * 179.72310 * 4 3 2 6 6 C 1.46374 * 120.00197 * 359.97438 * 4 3 2 7 7 H 1.08001 * 119.99690 * 0.02562 * 6 4 3 8 8 C 1.40046 * 120.00350 * 180.02562 * 6 4 3 9 9 N 1.30668 * 119.99575 * 359.97438 * 8 6 4 10 10 Si 1.86797 * 120.00330 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47210 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47428 * 119.99698 * 10 8 6 13 13 H 1.48498 * 109.46942 * 240.00223 * 10 8 6 14 14 C 1.46491 * 120.00482 * 264.01429 * 3 2 1 15 15 H 1.08999 * 109.47236 * 158.24014 * 14 3 2 16 16 C 1.53006 * 109.47032 * 38.24696 * 14 3 2 17 17 C 1.50696 * 109.47487 * 278.24397 * 14 3 2 18 18 C 1.38363 * 119.84520 * 43.87172 * 17 14 3 19 19 C 1.37949 * 120.15268 * 179.76162 * 18 17 14 20 20 C 1.39633 * 119.84287 * 0.51420 * 19 18 17 21 21 C 1.43198 * 120.14800 * 179.76366 * 20 19 18 22 22 N 7.80782 * 157.21472 * 272.77733 * 2 1 3 23 23 C 1.39635 * 119.69906 * 359.74391 * 20 19 18 24 24 C 1.37947 * 119.84836 * 359.97438 * 23 20 19 25 25 H 1.09005 * 109.46729 * 299.99606 * 1 2 3 26 26 H 1.08997 * 109.47226 * 59.99335 * 1 2 3 27 27 H 1.08997 * 109.47274 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46467 * 240.00715 * 2 1 3 29 29 H 1.08997 * 109.47226 * 120.00665 * 2 1 3 30 30 H 0.97003 * 120.00059 * 179.97438 * 9 8 6 31 31 H 1.09004 * 109.46504 * 300.00215 * 16 14 3 32 32 H 1.08996 * 109.47014 * 59.99809 * 16 14 3 33 33 H 1.08997 * 109.47207 * 180.02562 * 16 14 3 34 34 H 1.08007 * 119.92414 * 0.02681 * 18 17 14 35 35 H 1.07995 * 120.08004 * 180.23138 * 19 18 17 36 36 H 1.07998 * 120.07670 * 179.97438 * 23 20 19 37 37 H 1.07995 * 119.92694 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1282 2.0571 1.1609 5 8 2.5386 3.2026 1.1615 6 6 1.7592 1.4112 2.4216 7 1 1.3993 0.3930 2.4215 8 6 1.8729 2.1136 3.6278 9 7 2.3089 3.3454 3.6279 10 14 1.4027 1.2892 5.2367 11 1 0.9427 -0.0968 4.9668 12 1 2.5825 1.2530 6.1378 13 1 0.3083 2.0560 5.8845 14 6 2.3872 2.0278 -1.2617 15 1 2.3500 3.1103 -1.1397 16 6 1.4070 1.6043 -2.3575 17 6 3.7834 1.6136 -1.6491 18 6 4.1647 0.2884 -1.5362 19 6 5.4397 -0.0986 -1.8937 20 6 6.3494 0.8524 -2.3602 21 6 7.6761 0.4587 -2.7283 22 7 8.7286 0.1465 -3.0203 23 6 5.9595 2.1890 -2.4664 24 6 4.6796 2.5611 -2.1110 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.3873 3.8321 4.4633 31 1 1.4441 0.5217 -2.4794 32 1 0.3972 1.9039 -2.0773 33 1 1.6817 2.0850 -3.2964 34 1 3.4613 -0.4455 -1.1714 35 1 5.7349 -1.1340 -1.8087 36 1 6.6583 2.9297 -2.8261 37 1 4.3765 3.5944 -2.1931 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153648843.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:31 Heat of formation + Delta-G solvation = 0.202535 kcal Electronic energy + Delta-G solvation = -20548.231919 eV Core-core repulsion = 17482.963979 eV Total energy + Delta-G solvation = -3065.267940 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.97748 -39.47182 -37.63111 -36.55086 -34.60193 -33.71697 -31.98201 -30.81153 -30.30580 -28.13361 -25.38188 -24.36257 -23.26492 -22.84467 -20.47292 -19.87373 -18.37132 -17.74184 -16.90771 -16.76696 -15.91719 -15.85345 -15.50979 -15.08298 -14.91833 -14.46023 -14.43570 -14.21155 -14.14765 -13.80065 -13.69572 -13.42117 -13.19363 -13.13762 -12.87069 -12.69543 -12.60905 -12.31991 -12.25450 -11.97313 -11.82203 -11.70052 -11.37538 -10.88600 -9.91386 -9.79264 -9.57877 -9.01816 -8.21424 -6.73503 -0.18535 0.46267 1.41086 1.42622 1.58220 1.58363 1.91750 2.27099 2.54323 2.79981 2.87266 3.05030 3.66270 3.90615 3.93467 4.00268 4.29035 4.31842 4.43250 4.53505 4.59911 4.73279 4.78160 4.86147 4.93376 5.03087 5.08024 5.17495 5.21120 5.31387 5.35977 5.41935 5.42786 5.65586 5.68589 5.89481 5.93304 6.25024 6.41160 6.55255 6.97113 7.53080 8.57487 8.76895 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018882 B = 0.005353 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.536279 B = 5229.162250 C = 5769.259304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.630 5.630 4 C 0.545 3.455 5 O -0.630 6.630 6 C -0.559 4.559 7 H 0.092 0.908 8 C 0.031 3.969 9 N -0.823 5.823 10 Si 0.984 3.016 11 H -0.244 1.244 12 H -0.274 1.274 13 H -0.273 1.273 14 C 0.173 3.827 15 H 0.060 0.940 16 C -0.141 4.141 17 C -0.057 4.057 18 C -0.121 4.121 19 C -0.062 4.062 20 C -0.053 4.053 21 C 0.286 3.714 22 N -0.466 5.466 23 C -0.063 4.063 24 C -0.124 4.124 25 H 0.033 0.967 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.270 0.730 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.154 0.846 36 H 0.149 0.851 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.710 -8.455 -10.808 13.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.007 4.007 3 N -0.365 5.365 4 C 0.351 3.649 5 O -0.517 6.517 6 C -0.595 4.595 7 H 0.110 0.890 8 C -0.184 4.184 9 N -0.453 5.453 10 Si 0.804 3.196 11 H -0.167 1.167 12 H -0.199 1.199 13 H -0.198 1.198 14 C 0.068 3.932 15 H 0.078 0.922 16 C -0.199 4.199 17 C -0.059 4.059 18 C -0.139 4.139 19 C -0.082 4.082 20 C -0.056 4.056 21 C -0.029 4.029 22 N -0.142 5.142 23 C -0.083 4.083 24 C -0.143 4.143 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.165 0.835 35 H 0.171 0.829 36 H 0.167 0.833 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.174 -8.184 -11.186 13.862 hybrid contribution -0.460 0.461 1.152 1.324 sum -0.286 -7.724 -10.034 12.665 Atomic orbital electron populations 1.22242 0.96357 1.02241 1.01532 1.21504 0.94403 0.82675 1.02141 1.47931 1.69285 1.14470 1.04848 1.18539 0.77296 0.84963 0.84103 1.90551 1.52994 1.21020 1.87118 1.21510 1.46417 1.01195 0.90397 0.89036 1.26868 0.92327 0.94715 1.04484 1.70201 1.35243 1.11341 1.28496 0.85163 0.78249 0.79720 0.76420 1.16685 1.19931 1.19807 1.19723 0.90576 0.97458 0.85398 0.92171 1.22097 0.97898 1.02984 0.96912 1.20839 0.96704 0.94369 0.94004 1.21315 0.96822 0.96010 0.99714 1.21352 0.92033 0.99800 0.95033 1.16021 0.86610 0.95081 1.07921 1.25802 0.92555 0.92368 0.92137 1.81237 1.12521 1.09250 1.11220 1.21269 0.96093 0.94212 0.96748 1.21119 0.93214 1.00051 0.99914 0.94729 0.92210 0.90123 0.88695 0.91878 0.92015 0.90236 0.92330 0.90200 0.83549 0.82858 0.83325 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.60 9.93 71.98 0.71 -3.88 16 2 C 0.12 3.50 4.06 86.38 0.35 3.85 16 3 N -0.63 -25.12 2.21 -807.08 -1.78 -26.90 16 4 C 0.55 29.50 7.57 86.36 0.65 30.15 16 5 O -0.63 -40.19 14.48 -4.30 -0.06 -40.25 16 6 C -0.56 -29.80 8.21 24.83 0.20 -29.59 16 7 H 0.09 4.36 5.90 -2.91 -0.02 4.34 16 8 C 0.03 1.66 5.50 85.30 0.47 2.13 16 9 N -0.82 -49.37 11.83 21.83 0.26 -49.11 16 10 Si 0.98 40.00 29.56 68.60 2.03 42.03 16 11 H -0.24 -9.04 7.11 99.48 0.71 -8.33 16 12 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 13 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 14 C 0.17 5.86 2.77 44.25 0.12 5.98 16 15 H 0.06 2.48 7.00 -2.39 -0.02 2.47 16 16 C -0.14 -3.40 7.95 71.98 0.57 -2.83 16 17 C -0.06 -1.69 4.95 -19.81 -0.10 -1.79 16 18 C -0.12 -3.08 9.14 22.23 0.20 -2.88 16 19 C -0.06 -1.38 9.76 22.54 0.22 -1.16 16 20 C -0.05 -1.25 5.73 -21.36 -0.12 -1.37 16 21 C 0.29 7.30 15.33 88.33 1.35 8.66 16 22 N -0.47 -13.72 18.54 19.00 0.35 -13.37 16 23 C -0.06 -1.49 9.76 22.54 0.22 -1.27 16 24 C -0.12 -3.42 9.65 22.23 0.21 -3.21 16 25 H 0.03 1.19 7.48 -2.38 -0.02 1.17 16 26 H 0.06 1.53 6.13 -2.39 -0.01 1.51 16 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.10 2.14 4.51 -2.39 -0.01 2.13 16 29 H 0.06 2.08 6.45 -2.39 -0.02 2.06 16 30 H 0.27 14.82 8.29 -92.71 -0.77 14.05 16 31 H 0.08 1.57 6.62 -2.38 -0.02 1.56 16 32 H 0.06 1.48 7.00 -2.39 -0.02 1.47 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.15 3.35 4.68 -2.91 -0.01 3.34 16 35 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 36 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 37 H 0.13 3.53 8.00 -2.91 -0.02 3.51 16 Total: -1.00 -74.21 312.70 6.97 -67.24 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 1.10 Total: 17.57 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 5.08 Total: 2.80 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -1.17 Total: -89.39 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -0.06 Total: -40.25 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -74.21 6.97 -67.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153648843.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.442 kcal (2) G-P(sol) polarization free energy of solvation -74.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds