Wall clock time and date at job start Mon Mar 30 2020 01:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47139 * 2 1 4 4 N 1.46499 * 109.46893 * 179.97438 * 3 2 1 5 5 C 1.36815 * 125.05265 * 264.97513 * 4 3 2 6 6 C 1.34243 * 109.95055 * 180.02562 * 5 4 3 7 7 C 1.46508 * 106.98446 * 359.97438 * 6 5 4 8 8 C 1.39559 * 134.00151 * 179.97438 * 7 6 5 9 9 C 1.38513 * 119.43618 * 180.02562 * 8 7 6 10 10 N 1.39590 * 119.90751 * 180.02562 * 9 8 7 11 11 C 1.34780 * 119.99988 * 33.52650 * 10 9 8 12 12 O 1.21770 * 119.99974 * 5.28085 * 11 10 9 13 13 C 1.41813 * 120.00255 * 185.27648 * 11 10 9 14 14 H 1.08001 * 119.99805 * 359.97438 * 13 11 10 15 15 C 1.40124 * 120.00025 * 179.97438 * 13 11 10 16 16 N 1.30626 * 120.00196 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99737 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47350 * 60.00239 * 17 15 13 19 19 H 1.48504 * 109.47149 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47507 * 299.99991 * 17 15 13 21 21 C 1.39574 * 120.18653 * 359.97438 * 9 8 7 22 22 C 1.36548 * 120.73788 * 0.25144 * 21 9 8 23 23 C 1.37766 * 125.05315 * 84.99770 * 4 3 2 24 24 H 1.09000 * 109.46914 * 60.00228 * 1 2 3 25 25 H 1.08999 * 109.47376 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47410 * 300.00662 * 1 2 3 27 27 H 1.08999 * 109.46930 * 239.99544 * 2 1 3 28 28 H 1.09000 * 109.46914 * 119.99772 * 2 1 3 29 29 H 1.08993 * 109.47053 * 59.99511 * 3 2 1 30 30 H 1.09000 * 109.47031 * 299.99701 * 3 2 1 31 31 H 1.07995 * 125.02722 * 359.97438 * 5 4 3 32 32 H 1.07995 * 126.51133 * 180.02562 * 6 5 4 33 33 H 1.07998 * 120.28282 * 0.02562 * 8 7 6 34 34 H 0.97000 * 120.00264 * 213.52111 * 10 9 8 35 35 H 0.97003 * 120.00380 * 179.97438 * 16 15 13 36 36 H 1.07999 * 119.62736 * 180.02562 * 21 9 8 37 37 H 1.08005 * 119.92440 * 179.69742 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2903 1.5407 1.1166 6 6 5.5865 1.5105 0.7687 7 6 5.6353 1.3818 -0.6899 8 6 6.6708 1.3004 -1.6219 9 6 6.3673 1.1819 -2.9681 10 7 7.3954 1.0992 -3.9088 11 6 8.5500 0.4800 -3.5925 12 8 8.6616 -0.0905 -2.5225 13 6 9.6348 0.4927 -4.5058 14 1 9.5356 0.9983 -5.4550 15 6 10.8353 -0.1506 -4.1767 16 7 10.9551 -0.7625 -3.0288 17 14 12.2644 -0.1331 -5.3794 18 1 12.6707 1.2703 -5.6453 19 1 13.4097 -0.8788 -4.7983 20 1 11.8491 -0.7775 -6.6512 21 6 5.0363 1.1438 -3.3868 22 6 4.0174 1.2274 -2.4816 23 6 4.2967 1.3439 -1.1225 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9220 1.6302 2.1279 32 1 6.4328 1.5690 1.4371 33 1 7.7001 1.3296 -1.2963 34 1 7.2788 1.4873 -4.7901 35 1 11.7861 -1.2082 -2.8011 36 1 4.8100 1.0507 -4.4387 37 1 2.9922 1.2015 -2.8205 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153704088.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:06 Heat of formation + Delta-G solvation = -4.930877 kcal Electronic energy + Delta-G solvation = -19941.706061 eV Core-core repulsion = 16876.215520 eV Total energy + Delta-G solvation = -3065.490541 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.15375 -40.14063 -37.74572 -35.82096 -34.87327 -34.14498 -32.55177 -30.22244 -29.71085 -28.24720 -26.49149 -24.03332 -22.88886 -22.56850 -21.37513 -20.95551 -19.43638 -18.03549 -17.75920 -17.46975 -16.61101 -15.97549 -15.88381 -15.73819 -15.26859 -14.82107 -14.65525 -14.29015 -14.22494 -13.85749 -13.62456 -13.35886 -13.09171 -12.90301 -12.83114 -12.75409 -12.67816 -12.53444 -12.06974 -12.01530 -11.75578 -11.67586 -10.98523 -10.63629 -10.17809 -9.78085 -8.76165 -8.35735 -8.13656 -6.98718 0.31234 0.75204 1.38946 1.42906 1.55099 1.86803 2.00738 2.22286 2.40547 3.01609 3.12203 3.69335 3.81805 3.83181 4.00815 4.05993 4.20057 4.37420 4.38118 4.57659 4.62504 4.67319 4.80253 4.84655 4.88879 5.10096 5.16415 5.18565 5.22711 5.23541 5.40068 5.44594 5.64044 5.76562 5.89376 5.94018 6.24397 6.25958 6.57232 6.60284 6.75295 7.48613 8.43415 8.61454 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.039456 B = 0.003748 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.480644 B = 7469.299623 C = 7797.698192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.140 4.140 3 C 0.109 3.891 4 N -0.482 5.482 5 C 0.077 3.923 6 C -0.252 4.252 7 C -0.116 4.116 8 C -0.125 4.125 9 C 0.131 3.869 10 N -0.697 5.697 11 C 0.529 3.471 12 O -0.617 6.617 13 C -0.568 4.568 14 H 0.091 0.909 15 C 0.029 3.971 16 N -0.805 5.805 17 Si 1.004 2.996 18 H -0.253 1.253 19 H -0.273 1.273 20 H -0.251 1.251 21 C -0.139 4.139 22 C -0.098 4.098 23 C 0.057 3.943 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.117 0.883 30 H 0.094 0.906 31 H 0.211 0.789 32 H 0.139 0.861 33 H 0.084 0.916 34 H 0.404 0.596 35 H 0.278 0.722 36 H 0.149 0.851 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.565 5.283 3.750 20.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.179 4.179 3 C -0.011 4.011 4 N -0.165 5.165 5 C -0.050 4.050 6 C -0.277 4.277 7 C -0.121 4.121 8 C -0.148 4.148 9 C 0.033 3.967 10 N -0.342 5.342 11 C 0.338 3.662 12 O -0.504 6.504 13 C -0.604 4.604 14 H 0.109 0.891 15 C -0.189 4.189 16 N -0.433 5.433 17 Si 0.823 3.177 18 H -0.177 1.177 19 H -0.197 1.197 20 H -0.175 1.175 21 C -0.160 4.160 22 C -0.119 4.119 23 C -0.048 4.048 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.135 0.865 30 H 0.113 0.887 31 H 0.228 0.772 32 H 0.157 0.843 33 H 0.102 0.898 34 H 0.239 0.761 35 H 0.088 0.912 36 H 0.167 0.833 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -19.683 4.785 4.609 20.774 hybrid contribution 1.316 -0.124 -0.680 1.487 sum -18.367 4.661 3.929 19.352 Atomic orbital electron populations 1.21662 0.92756 1.02623 1.03053 1.21915 0.97867 0.95965 1.02143 1.22109 0.74834 0.98364 1.05843 1.44143 1.06591 1.62201 1.03576 1.22255 0.89133 1.01005 0.92558 1.21852 0.97727 1.15869 0.92243 1.19420 0.92580 1.05370 0.94769 1.20421 0.97565 1.04186 0.92612 1.17935 0.89152 1.00133 0.89466 1.43615 1.14972 1.59867 1.15712 1.17458 0.82346 0.78612 0.87803 1.90616 1.82642 1.49392 1.27774 1.20583 0.97904 1.36859 1.05013 0.89078 1.27087 1.02785 0.91771 0.97210 1.70187 1.26736 1.23987 1.22439 0.84979 0.75118 0.79850 0.77787 1.17696 1.19722 1.17511 1.20594 0.89493 1.05057 1.00884 1.19757 0.99887 1.03799 0.88418 1.18320 0.89449 1.07449 0.89623 0.91686 0.92258 0.91043 0.93260 0.92030 0.86504 0.88740 0.77225 0.84321 0.89781 0.76053 0.91193 0.83325 0.82845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.91 71.98 0.71 -0.70 16 2 C -0.14 -2.14 6.26 30.60 0.19 -1.95 16 3 C 0.11 1.65 6.00 86.38 0.52 2.17 16 4 N -0.48 -12.30 2.78 -515.73 -1.43 -13.73 16 5 C 0.08 1.94 11.27 83.00 0.94 2.88 16 6 C -0.25 -8.89 11.08 23.51 0.26 -8.63 16 7 C -0.12 -4.99 6.37 -20.20 -0.13 -5.11 16 8 C -0.13 -6.43 8.70 22.65 0.20 -6.24 16 9 C 0.13 6.15 6.28 38.29 0.24 6.39 16 10 N -0.70 -34.69 5.31 -311.32 -1.65 -36.35 16 11 C 0.53 32.33 7.30 85.12 0.62 32.95 16 12 O -0.62 -43.23 12.56 -4.57 -0.06 -43.29 16 13 C -0.57 -32.92 9.31 23.61 0.22 -32.70 16 14 H 0.09 4.65 7.85 -2.91 -0.02 4.63 16 15 C 0.03 1.64 5.50 85.33 0.47 2.11 16 16 N -0.81 -50.04 11.73 21.85 0.26 -49.79 16 17 Si 1.00 41.02 29.56 68.60 2.03 43.05 16 18 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 19 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 20 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 21 C -0.14 -5.02 9.88 22.20 0.22 -4.80 16 22 C -0.10 -3.06 9.92 22.12 0.22 -2.84 16 23 C 0.06 1.97 6.82 39.06 0.27 2.23 16 24 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.12 1.09 8.12 -2.39 -0.02 1.07 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.21 3.09 8.06 -2.91 -0.02 3.06 16 32 H 0.14 4.72 8.06 -2.91 -0.02 4.70 16 33 H 0.08 5.10 6.42 -2.91 -0.02 5.08 16 34 H 0.40 16.83 8.77 -92.71 -0.81 16.02 16 35 H 0.28 15.57 8.29 -92.71 -0.77 14.81 16 36 H 0.15 4.36 8.06 -2.91 -0.02 4.33 16 37 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -84.70 318.40 4.35 -80.35 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: 0.27 Total: 33.98 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 4.94 Total: -14.23 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -2.83 Total: -99.87 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -0.06 Total: -43.29 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -84.70 4.35 -80.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153704088.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.421 kcal (2) G-P(sol) polarization free energy of solvation -84.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds