Wall clock time and date at job start Mon Mar 30 2020 01:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39588 * 120.10327 * 138.88384 * 3 2 1 5 5 C 1.38001 * 119.99213 * 179.97438 * 4 3 2 6 6 C 1.38238 * 120.21920 * 0.02562 * 5 4 3 7 7 C 1.38943 * 120.21429 * 359.97438 * 6 5 4 8 8 N 1.39966 * 119.99840 * 180.27502 * 7 6 5 9 9 C 1.34778 * 119.99962 * 144.62941 * 8 7 6 10 10 O 1.21589 * 119.99693 * 4.63034 * 9 8 7 11 11 N 1.34773 * 120.00162 * 184.62330 * 9 8 7 12 12 C 1.46497 * 119.99991 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47438 * 325.00069 * 12 11 9 14 14 C 1.50708 * 109.47165 * 205.00317 * 12 11 9 15 15 H 1.07997 * 119.99717 * 359.97438 * 14 12 11 16 16 C 1.37873 * 120.00230 * 180.02562 * 14 12 11 17 17 N 1.31512 * 120.00535 * 180.02562 * 16 14 12 18 18 Si 1.86803 * 119.99850 * 359.97438 * 16 14 12 19 19 H 1.48503 * 109.46909 * 90.00226 * 18 16 14 20 20 H 1.48499 * 109.47032 * 210.00022 * 18 16 14 21 21 H 1.48491 * 109.47414 * 330.00380 * 18 16 14 22 22 C 1.52997 * 109.47635 * 85.00184 * 12 11 9 23 23 C 1.52998 * 109.46936 * 295.00315 * 22 12 11 24 24 C 1.38633 * 120.00228 * 0.02562 * 7 6 5 25 25 H 4.52050 * 14.02979 * 359.97438 * 4 2 1 26 26 H 1.07991 * 120.00607 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.89071 * 180.02562 * 5 4 3 28 28 H 1.07997 * 119.89413 * 180.02562 * 6 5 4 29 29 H 0.97002 * 120.00446 * 324.63831 * 8 7 6 30 30 H 0.97005 * 120.00196 * 0.02562 * 11 9 8 31 31 H 0.96999 * 120.00616 * 179.97438 * 17 16 14 32 32 H 1.09002 * 109.46782 * 54.99756 * 22 12 11 33 33 H 1.08991 * 109.47899 * 174.99551 * 22 12 11 34 34 H 1.09002 * 109.46929 * 299.99351 * 23 22 12 35 35 H 1.09001 * 109.47144 * 59.99692 * 23 22 12 36 36 H 1.09000 * 109.47262 * 179.97438 * 23 22 12 37 37 H 1.07998 * 120.10616 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3058 0.9107 -0.7941 5 6 4.6858 0.9097 -0.7919 6 6 5.3796 0.0091 -0.0056 7 6 4.6921 -0.9007 0.7883 8 7 5.3992 -1.8068 1.5871 9 6 4.9152 -2.1614 2.7940 10 8 3.8249 -1.7607 3.1533 11 7 5.6396 -2.9602 3.6024 12 6 5.1133 -3.3460 4.9139 13 1 4.5392 -2.5195 5.3326 14 6 6.2576 -3.6806 5.8359 15 1 7.2751 -3.6130 5.4801 16 6 6.0055 -4.0741 7.1330 17 7 7.0040 -4.3656 7.9377 18 14 4.2455 -4.1917 7.7480 19 1 3.7231 -5.5586 7.4949 20 1 4.2107 -3.9105 9.2057 21 1 3.4037 -3.1998 7.0322 22 6 4.2077 -4.5696 4.7603 23 6 2.9811 -4.1947 3.9262 24 6 3.3058 -0.9076 0.7930 25 1 -1.0500 -0.0010 0.0002 26 1 2.7673 1.6161 -1.4095 27 1 5.2255 1.6148 -1.4067 28 1 6.4596 0.0131 -0.0076 29 1 6.2376 -2.1794 1.2723 30 1 6.5096 -3.2796 3.3158 31 1 6.8267 -4.6420 8.8504 32 1 4.7568 -5.3675 4.2604 33 1 3.8873 -4.9106 5.7447 34 1 2.4319 -3.3967 4.4261 35 1 3.3015 -3.8538 2.9417 36 1 2.3361 -5.0664 3.8163 37 1 2.7697 -1.6143 1.4091 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155646463.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:23 Heat of formation + Delta-G solvation = 56.220951 kcal Electronic energy + Delta-G solvation = -20197.818400 eV Core-core repulsion = 17134.979601 eV Total energy + Delta-G solvation = -3062.838799 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.41453 -38.71022 -35.84389 -34.59170 -33.38642 -32.43819 -31.55434 -30.27295 -29.20381 -27.36095 -23.52164 -23.20497 -22.45169 -20.98588 -19.86839 -19.11522 -18.32814 -16.82188 -16.34430 -16.21493 -15.69969 -15.12712 -14.62909 -14.54137 -14.11192 -13.62323 -13.54196 -13.14183 -13.05023 -12.49349 -12.04657 -11.91038 -11.81217 -11.63163 -11.27806 -11.09840 -10.92994 -10.66045 -10.56541 -10.08076 -9.92233 -9.63297 -9.39452 -9.24787 -8.78601 -8.59992 -8.25949 -7.90023 -6.23305 -4.26136 0.91862 1.39803 2.70085 2.93472 3.06263 3.22509 3.34892 3.40257 3.63128 4.05716 4.22307 4.29910 4.74266 4.90292 5.09141 5.10570 5.15334 5.48871 5.52601 5.71962 5.95658 6.01880 6.06516 6.15925 6.26623 6.34316 6.47627 6.57524 6.63209 6.69151 6.79659 6.93032 7.08345 7.09985 7.27754 7.45054 7.49363 7.51084 8.23819 8.57044 8.75168 9.04530 9.37519 10.88675 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026600 B = 0.004576 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.375675 B = 6117.388635 C = 6838.596251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.139 4.139 3 C 0.020 3.980 4 C -0.121 4.121 5 C -0.101 4.101 6 C -0.144 4.144 7 C 0.179 3.821 8 N -0.695 5.695 9 C 0.694 3.306 10 O -0.577 6.577 11 N -0.710 5.710 12 C 0.259 3.741 13 H 0.051 0.949 14 C -0.536 4.536 15 H 0.080 0.920 16 C 0.080 3.920 17 N -0.892 5.892 18 Si 0.883 3.117 19 H -0.275 1.275 20 H -0.294 1.294 21 H -0.259 1.259 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.096 4.096 25 H 0.223 0.777 26 H 0.123 0.877 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.405 0.595 30 H 0.393 0.607 31 H 0.268 0.732 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.031 0.969 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.428 6.651 -17.429 19.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.139 4.139 3 C 0.020 3.980 4 C -0.140 4.140 5 C -0.120 4.120 6 C -0.165 4.165 7 C 0.083 3.917 8 N -0.343 5.343 9 C 0.395 3.605 10 O -0.454 6.454 11 N -0.361 5.361 12 C 0.155 3.845 13 H 0.068 0.932 14 C -0.574 4.574 15 H 0.098 0.902 16 C -0.124 4.124 17 N -0.528 5.528 18 Si 0.712 3.288 19 H -0.202 1.202 20 H -0.221 1.221 21 H -0.184 1.184 22 C -0.179 4.179 23 C -0.200 4.200 24 C -0.116 4.116 25 H 0.240 0.760 26 H 0.141 0.859 27 H 0.146 0.854 28 H 0.145 0.855 29 H 0.240 0.760 30 H 0.226 0.774 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.316 6.884 -16.766 19.193 hybrid contribution -0.115 -0.533 0.247 0.599 sum -6.431 6.351 -16.519 18.830 Atomic orbital electron populations 1.24821 0.95722 0.99784 0.99909 1.20041 0.92041 1.00953 1.00858 1.15819 0.86585 0.97418 0.98206 1.21076 0.94151 0.99043 0.99773 1.20772 0.93626 0.98520 0.99075 1.21012 1.00068 0.95477 0.99913 1.17370 0.90805 0.90896 0.92618 1.42787 1.26722 1.47310 1.17524 1.16079 0.84660 0.80019 0.79775 1.90899 1.20421 1.59458 1.74672 1.45442 1.21170 1.50665 1.18833 1.19084 0.93925 0.92956 0.78517 0.93168 1.21030 0.93154 1.47486 0.95735 0.90189 1.24810 0.97270 0.94052 0.96283 1.69859 1.31154 1.44860 1.06960 0.86909 0.85339 0.79112 0.77422 1.20204 1.22130 1.18392 1.22309 0.96260 1.00277 0.99007 1.21862 0.97978 0.99530 1.00627 1.21452 0.92787 0.99503 0.97881 0.76022 0.85902 0.85372 0.85485 0.75970 0.77421 0.92234 0.92306 0.92709 0.92811 0.93022 0.95039 0.83443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.13 19.25 29.55 0.57 -1.56 16 2 C -0.14 -1.93 13.24 -38.83 -0.51 -2.44 16 3 C 0.02 0.29 5.72 -107.03 -0.61 -0.32 16 4 C -0.12 -1.40 9.75 -39.16 -0.38 -1.78 16 5 C -0.10 -1.03 10.02 -39.67 -0.40 -1.43 16 6 C -0.14 -1.62 9.96 -39.32 -0.39 -2.01 16 7 C 0.18 2.54 6.29 -83.74 -0.53 2.01 16 8 N -0.70 -9.84 5.34 -14.26 -0.08 -9.92 16 9 C 0.69 12.84 6.97 -86.92 -0.61 12.23 16 10 O -0.58 -12.52 10.91 5.29 0.06 -12.47 16 11 N -0.71 -13.59 5.03 -59.81 -0.30 -13.89 16 12 C 0.26 6.03 1.83 -69.08 -0.13 5.90 16 13 H 0.05 1.31 6.63 -51.93 -0.34 0.96 16 14 C -0.54 -14.24 9.31 -34.44 -0.32 -14.56 16 15 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 16 C 0.08 2.21 5.45 -17.82 -0.10 2.12 16 17 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 18 Si 0.88 21.61 24.41 -169.99 -4.15 17.46 16 19 H -0.28 -6.52 6.83 56.52 0.39 -6.14 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 22 C -0.14 -3.07 5.11 -26.73 -0.14 -3.20 16 23 C -0.14 -2.86 8.51 37.16 0.32 -2.55 16 24 C -0.10 -1.51 8.39 -39.00 -0.33 -1.83 16 25 H 0.22 1.59 7.80 -54.09 -0.42 1.17 16 26 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 27 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 28 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 29 H 0.41 4.29 8.84 -40.82 -0.36 3.93 16 30 H 0.39 6.50 8.56 -40.82 -0.35 6.15 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.27 3.21 -51.93 -0.17 1.10 16 34 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 35 H 0.05 1.02 5.65 -51.93 -0.29 0.72 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.15 2.67 6.23 -52.49 -0.33 2.34 16 LS Contribution 311.43 15.07 4.69 4.69 Total: -1.00 -32.05 311.43 -6.94 -38.99 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -4.39 Total: 9.98 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -3.55 Total: -9.44 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 0.40 Total: -49.21 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.06 Total: -12.47 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.15 Total: 17.46 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.05 -6.94 -38.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155646463.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.210 kcal (2) G-P(sol) polarization free energy of solvation -32.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds