Wall clock time and date at job start Mon Mar 30 2020 01:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39588 * 120.10327 * 138.88384 * 3 2 1 5 5 C 1.38001 * 119.99213 * 179.97438 * 4 3 2 6 6 C 1.38238 * 120.21920 * 0.02562 * 5 4 3 7 7 C 1.38943 * 120.21429 * 359.97438 * 6 5 4 8 8 N 1.39966 * 119.99840 * 180.27502 * 7 6 5 9 9 C 1.34778 * 119.99962 * 144.62941 * 8 7 6 10 10 O 1.21589 * 119.99693 * 4.63034 * 9 8 7 11 11 N 1.34773 * 120.00162 * 184.62330 * 9 8 7 12 12 C 1.46497 * 119.99991 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47438 * 325.00069 * 12 11 9 14 14 C 1.50708 * 109.47165 * 205.00317 * 12 11 9 15 15 H 1.07997 * 119.99717 * 359.97438 * 14 12 11 16 16 C 1.37873 * 120.00230 * 180.02562 * 14 12 11 17 17 N 1.31512 * 120.00535 * 180.02562 * 16 14 12 18 18 Si 1.86803 * 119.99850 * 359.97438 * 16 14 12 19 19 H 1.48503 * 109.46909 * 90.00226 * 18 16 14 20 20 H 1.48499 * 109.47032 * 210.00022 * 18 16 14 21 21 H 1.48491 * 109.47414 * 330.00380 * 18 16 14 22 22 C 1.52997 * 109.47635 * 85.00184 * 12 11 9 23 23 C 1.52998 * 109.46936 * 295.00315 * 22 12 11 24 24 C 1.38633 * 120.00228 * 0.02562 * 7 6 5 25 25 H 4.52050 * 14.02979 * 359.97438 * 4 2 1 26 26 H 1.07991 * 120.00607 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.89071 * 180.02562 * 5 4 3 28 28 H 1.07997 * 119.89413 * 180.02562 * 6 5 4 29 29 H 0.97002 * 120.00446 * 324.63831 * 8 7 6 30 30 H 0.97005 * 120.00196 * 0.02562 * 11 9 8 31 31 H 0.96999 * 120.00616 * 179.97438 * 17 16 14 32 32 H 1.09002 * 109.46782 * 54.99756 * 22 12 11 33 33 H 1.08991 * 109.47899 * 174.99551 * 22 12 11 34 34 H 1.09002 * 109.46929 * 299.99351 * 23 22 12 35 35 H 1.09001 * 109.47144 * 59.99692 * 23 22 12 36 36 H 1.09000 * 109.47262 * 179.97438 * 23 22 12 37 37 H 1.07998 * 120.10616 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3058 0.9107 -0.7941 5 6 4.6858 0.9097 -0.7919 6 6 5.3796 0.0091 -0.0056 7 6 4.6921 -0.9007 0.7883 8 7 5.3992 -1.8068 1.5871 9 6 4.9152 -2.1614 2.7940 10 8 3.8249 -1.7607 3.1533 11 7 5.6396 -2.9602 3.6024 12 6 5.1133 -3.3460 4.9139 13 1 4.5392 -2.5195 5.3326 14 6 6.2576 -3.6806 5.8359 15 1 7.2751 -3.6130 5.4801 16 6 6.0055 -4.0741 7.1330 17 7 7.0040 -4.3656 7.9377 18 14 4.2455 -4.1917 7.7480 19 1 3.7231 -5.5586 7.4949 20 1 4.2107 -3.9105 9.2057 21 1 3.4037 -3.1998 7.0322 22 6 4.2077 -4.5696 4.7603 23 6 2.9811 -4.1947 3.9262 24 6 3.3058 -0.9076 0.7930 25 1 -1.0500 -0.0010 0.0002 26 1 2.7673 1.6161 -1.4095 27 1 5.2255 1.6148 -1.4067 28 1 6.4596 0.0131 -0.0076 29 1 6.2376 -2.1794 1.2723 30 1 6.5096 -3.2796 3.3158 31 1 6.8267 -4.6420 8.8504 32 1 4.7568 -5.3675 4.2604 33 1 3.8873 -4.9106 5.7447 34 1 2.4319 -3.3967 4.4261 35 1 3.3015 -3.8538 2.9417 36 1 2.3361 -5.0664 3.8163 37 1 2.7697 -1.6143 1.4091 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155646463.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:23 Heat of formation + Delta-G solvation = 34.404754 kcal Electronic energy + Delta-G solvation = -20198.764422 eV Core-core repulsion = 17134.979601 eV Total energy + Delta-G solvation = -3063.784820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.71517 -39.88688 -37.43180 -35.92126 -34.50793 -34.30777 -33.17546 -31.24282 -30.39178 -29.16154 -24.87165 -24.45740 -23.89757 -22.39071 -21.50426 -20.19145 -19.83821 -18.27298 -17.88271 -17.31167 -17.20300 -16.48964 -16.18058 -15.77010 -15.31786 -15.17044 -14.98089 -14.52817 -14.24584 -14.08259 -13.80687 -13.66671 -13.00428 -12.84887 -12.78922 -12.60624 -12.43583 -12.24478 -11.87274 -11.56185 -11.38519 -11.25385 -11.16486 -10.93526 -10.86584 -9.88149 -9.56705 -9.02896 -8.38687 -6.44061 -0.02457 0.40567 1.26706 1.35336 1.45072 1.65192 1.82883 1.96107 2.25572 2.27386 2.97329 3.06322 3.28781 3.45905 4.05298 4.21014 4.23051 4.27917 4.30655 4.42361 4.54794 4.61391 4.73384 4.83776 4.98721 5.09136 5.18494 5.20691 5.33908 5.37208 5.39995 5.48764 5.53461 5.58554 5.65955 5.98427 6.06088 6.28650 6.57831 6.58640 7.12792 7.23316 7.61901 8.76394 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026600 B = 0.004576 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.375675 B = 6117.388635 C = 6838.596251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.197 4.197 3 C 0.002 3.998 4 C -0.119 4.119 5 C -0.090 4.090 6 C -0.134 4.134 7 C 0.155 3.845 8 N -0.677 5.677 9 C 0.695 3.305 10 O -0.611 6.611 11 N -0.709 5.709 12 C 0.268 3.732 13 H 0.021 0.979 14 C -0.533 4.533 15 H 0.059 0.941 16 C 0.033 3.967 17 N -0.932 5.932 18 Si 0.934 3.066 19 H -0.259 1.259 20 H -0.293 1.293 21 H -0.262 1.262 22 C -0.137 4.137 23 C -0.131 4.131 24 C -0.124 4.124 25 H 0.261 0.739 26 H 0.146 0.854 27 H 0.170 0.830 28 H 0.158 0.842 29 H 0.423 0.577 30 H 0.405 0.595 31 H 0.270 0.730 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.035 0.965 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.012 7.536 -19.681 21.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.197 4.197 3 C 0.002 3.998 4 C -0.138 4.138 5 C -0.108 4.108 6 C -0.155 4.155 7 C 0.060 3.940 8 N -0.327 5.327 9 C 0.395 3.605 10 O -0.490 6.490 11 N -0.362 5.362 12 C 0.163 3.837 13 H 0.039 0.961 14 C -0.571 4.571 15 H 0.077 0.923 16 C -0.167 4.167 17 N -0.571 5.571 18 Si 0.761 3.239 19 H -0.184 1.184 20 H -0.220 1.220 21 H -0.187 1.187 22 C -0.176 4.176 23 C -0.188 4.188 24 C -0.145 4.145 25 H 0.277 0.723 26 H 0.163 0.837 27 H 0.187 0.813 28 H 0.175 0.825 29 H 0.261 0.739 30 H 0.241 0.759 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.871 7.771 -19.082 21.719 hybrid contribution 0.060 -0.702 0.816 1.078 sum -6.811 7.069 -18.266 20.737 Atomic orbital electron populations 1.25792 0.96576 0.97507 0.97630 1.20590 0.92998 1.03125 1.03015 1.16071 0.87224 0.97866 0.98686 1.21435 0.95045 0.98348 0.98942 1.21265 0.93178 0.98168 0.98232 1.21359 1.01580 0.94140 0.98408 1.17601 0.90474 0.92120 0.93777 1.42461 1.27163 1.47075 1.15974 1.16126 0.84101 0.79519 0.80707 1.90889 1.21932 1.60495 1.75730 1.45108 1.21899 1.51358 1.17802 1.18668 0.92663 0.92606 0.79758 0.96075 1.21261 0.93297 1.46209 0.96322 0.92305 1.25486 1.00483 0.94088 0.96675 1.69960 1.33038 1.46621 1.07500 0.86077 0.81345 0.79758 0.76702 1.18446 1.22049 1.18709 1.22223 0.96793 0.99655 0.98922 1.21727 0.97318 0.99900 0.99891 1.21277 0.93729 1.00354 0.99152 0.72290 0.83663 0.81304 0.82462 0.73859 0.75934 0.92035 0.91140 0.93731 0.94627 0.93037 0.92464 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 19.25 74.32 1.43 -2.00 16 2 C -0.20 -5.47 13.24 30.02 0.40 -5.07 16 3 C 0.00 0.06 5.72 -21.42 -0.12 -0.06 16 4 C -0.12 -2.49 9.75 22.54 0.22 -2.27 16 5 C -0.09 -1.52 10.02 22.21 0.22 -1.30 16 6 C -0.13 -2.64 9.96 22.44 0.22 -2.42 16 7 C 0.16 4.29 6.29 38.11 0.24 4.53 16 8 N -0.68 -18.74 5.34 -317.28 -1.69 -20.43 16 9 C 0.69 25.90 6.97 179.06 1.25 27.15 16 10 O -0.61 -27.31 10.91 -4.00 -0.04 -27.35 16 11 N -0.71 -27.25 5.03 -461.41 -2.32 -29.57 16 12 C 0.27 12.62 1.83 44.25 0.08 12.70 16 13 H 0.02 1.14 6.63 -2.39 -0.02 1.12 16 14 C -0.53 -28.77 9.31 25.60 0.24 -28.53 16 15 H 0.06 3.36 7.98 -2.91 -0.02 3.33 16 16 C 0.03 1.84 5.45 84.65 0.46 2.30 16 17 N -0.93 -55.63 13.96 21.45 0.30 -55.33 16 18 Si 0.93 44.87 24.41 68.60 1.67 46.54 16 19 H -0.26 -11.67 6.83 99.48 0.68 -10.99 16 20 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 21 H -0.26 -12.65 6.53 99.48 0.65 -12.00 16 22 C -0.14 -5.94 5.11 30.59 0.16 -5.78 16 23 C -0.13 -5.19 8.51 71.98 0.61 -4.58 16 24 C -0.12 -4.02 8.39 22.65 0.19 -3.83 16 25 H 0.26 2.98 7.80 -4.42 -0.03 2.94 16 26 H 0.15 2.32 8.06 -2.92 -0.02 2.29 16 27 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 28 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 29 H 0.42 8.32 8.84 -92.71 -0.82 7.50 16 30 H 0.41 13.31 8.56 -92.70 -0.79 12.52 16 31 H 0.27 15.17 8.31 -92.71 -0.77 14.39 16 32 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.04 2.02 3.21 -2.39 -0.01 2.01 16 34 H 0.03 1.52 7.84 -2.39 -0.02 1.50 16 35 H 0.05 2.03 5.65 -2.39 -0.01 2.01 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.11 4.37 6.23 -2.91 -0.02 4.35 16 Total: -1.00 -72.16 311.43 2.93 -69.24 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -0.59 Total: 26.07 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 5.60 Total: -9.16 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -3.71 Total: -105.33 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.04 Total: -27.35 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.67 Total: 46.54 kcal Total: -72.16 2.93 -69.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155646463.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.642 kcal (2) G-P(sol) polarization free energy of solvation -72.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds