Wall clock time and date at job start Mon Mar 30 2020 01:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47208 * 2 1 4 4 C 1.50706 * 109.46833 * 119.99103 * 2 1 3 5 5 H 1.08003 * 119.99348 * 119.99779 * 4 2 1 6 6 C 1.37878 * 120.00327 * 300.00367 * 4 2 1 7 7 N 1.31515 * 119.99572 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99929 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47305 * 269.99922 * 8 6 4 10 10 H 1.48500 * 109.47059 * 30.00155 * 8 6 4 11 11 H 1.48502 * 109.46804 * 150.00165 * 8 6 4 12 12 N 1.46493 * 109.47487 * 239.99258 * 2 1 3 13 13 C 1.46505 * 119.99915 * 300.00682 * 12 2 1 14 14 C 1.34780 * 120.00223 * 120.00121 * 12 2 1 15 15 O 1.21597 * 119.99467 * 6.48942 * 14 12 2 16 16 C 1.47499 * 119.99862 * 186.48644 * 14 12 2 17 17 C 1.41190 * 126.37676 * 7.81971 * 16 14 12 18 18 C 1.37996 * 106.87020 * 179.89793 * 17 16 14 19 19 C 1.41381 * 131.99039 * 180.08880 * 18 17 16 20 20 C 1.35735 * 119.33297 * 180.29721 * 19 18 17 21 21 C 1.40830 * 119.72406 * 0.02562 * 20 19 18 22 22 C 1.34538 * 120.57996 * 359.97438 * 21 20 19 23 23 N 1.37447 * 120.74331 * 0.02562 * 22 21 20 24 24 C 1.35125 * 131.28310 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.47487 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47069 * 300.00940 * 1 2 3 27 27 H 1.09008 * 109.46237 * 60.00438 * 1 2 3 28 28 H 0.96998 * 119.99677 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47333 * 95.88857 * 13 12 2 30 30 H 1.09002 * 109.46567 * 215.89018 * 13 12 2 31 31 H 1.08999 * 109.46875 * 335.88781 * 13 12 2 32 32 H 1.08004 * 126.56302 * 0.02562 * 17 16 14 33 33 H 1.08004 * 120.33443 * 0.32709 * 19 18 17 34 34 H 1.08005 * 120.14065 * 180.02562 * 20 19 18 35 35 H 1.07997 * 119.71288 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.63274 * 180.02562 * 22 21 20 37 37 H 1.08002 * 125.61571 * 359.95497 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4829 7 7 0.9434 0.8305 2.6033 8 14 2.3212 -1.1200 4.0082 9 1 1.3426 -2.1612 4.4121 10 1 3.6292 -1.7579 3.7125 11 1 2.4863 -0.1408 5.1124 12 7 2.0184 -0.6907 -1.1960 13 6 1.6644 -2.0933 -1.4277 14 6 2.7933 -0.0358 -2.0832 15 8 3.1846 1.0884 -1.8352 16 6 3.1668 -0.6830 -3.3550 17 6 2.6694 -1.9087 -3.8485 18 6 3.2845 -2.1303 -5.0638 19 6 3.1761 -3.1836 -6.0007 20 6 3.9210 -3.1442 -7.1346 21 6 4.7895 -2.0591 -7.3622 22 6 4.8870 -1.0608 -6.4657 23 7 4.1427 -1.0788 -5.3103 24 6 4.0723 -0.2056 -4.2815 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 0.7087 1.1617 3.4842 29 1 0.7974 -2.1452 -2.0862 30 1 2.5052 -2.6081 -1.8927 31 1 1.4274 -2.5701 -0.4766 32 1 1.9445 -2.5491 -3.3680 33 1 2.5068 -4.0109 -5.8162 34 1 3.8481 -3.9416 -7.8594 35 1 5.3824 -2.0282 -8.2643 36 1 5.5576 -0.2358 -6.6559 37 1 4.6325 0.7139 -4.1975 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155807944.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:33 Heat of formation + Delta-G solvation = 58.854918 kcal Electronic energy + Delta-G solvation = -20351.413071 eV Core-core repulsion = 17288.688489 eV Total energy + Delta-G solvation = -3062.724582 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.15038 -38.83256 -36.36713 -35.23816 -33.35509 -32.56931 -30.30157 -28.94897 -27.77654 -26.17091 -25.16882 -24.12669 -22.59753 -21.60725 -20.35465 -18.45417 -17.42741 -16.57435 -16.41016 -16.06284 -15.42782 -15.25502 -14.72565 -14.45339 -14.35817 -14.12390 -13.56194 -12.72631 -12.71679 -12.37167 -12.26208 -11.90803 -11.73261 -11.54510 -11.32324 -11.05550 -10.84590 -10.77933 -10.57393 -10.40995 -10.19727 -10.11525 -9.12770 -8.94612 -8.44206 -8.37520 -7.51219 -7.32963 -6.01694 -4.09050 0.72400 1.35274 2.44505 2.68251 3.30312 3.37289 3.40900 3.44755 4.04621 4.18895 4.41904 4.47894 4.68410 4.76866 4.94174 5.04120 5.29299 5.36028 5.51415 5.57589 5.74861 5.87138 5.91760 6.03767 6.09205 6.21928 6.33046 6.46465 6.78819 6.82774 6.87594 6.94003 7.13409 7.27938 7.53432 7.61891 7.78381 8.08804 8.27081 8.62606 8.90546 9.17266 9.57228 11.03723 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035845 B = 0.004100 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.947236 B = 6827.373804 C = 6979.982886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.064 0.936 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.583 5.583 13 C 0.075 3.925 14 C 0.571 3.429 15 O -0.556 6.556 16 C -0.153 4.153 17 C -0.175 4.175 18 C 0.016 3.984 19 C -0.071 4.071 20 C -0.143 4.143 21 C -0.143 4.143 22 C 0.044 3.956 23 N -0.345 5.345 24 C 0.010 3.990 25 H 0.030 0.970 26 H 0.093 0.907 27 H 0.011 0.989 28 H 0.263 0.737 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.170 0.830 33 H 0.141 0.859 34 H 0.130 0.870 35 H 0.142 0.858 36 H 0.159 0.841 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.419 -8.532 -18.621 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.313 5.313 13 C -0.069 4.069 14 C 0.359 3.641 15 O -0.436 6.436 16 C -0.160 4.160 17 C -0.199 4.199 18 C -0.087 4.087 19 C -0.090 4.090 20 C -0.163 4.163 21 C -0.163 4.163 22 C -0.075 4.075 23 N -0.009 5.009 24 C -0.123 4.123 25 H 0.049 0.951 26 H 0.112 0.888 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.187 0.813 33 H 0.159 0.841 34 H 0.148 0.852 35 H 0.160 0.840 36 H 0.176 0.824 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 4.681 -7.736 -18.471 20.566 hybrid contribution 0.334 -0.518 0.775 0.991 sum 5.015 -8.255 -17.696 20.160 Atomic orbital electron populations 1.22093 0.98131 0.99440 1.00787 1.18960 0.90794 0.94565 0.79924 0.91859 1.21341 1.31627 1.12938 0.90291 0.92206 1.24891 0.95008 0.94983 0.98928 1.69883 1.36529 1.22613 1.23676 0.86496 0.79197 0.79279 0.82429 1.20650 1.19934 1.21143 1.48011 1.48583 1.11467 1.23233 1.22107 0.99019 0.83583 1.02186 1.17402 0.79063 0.85315 0.82366 1.90717 1.55183 1.19638 1.78096 1.19941 1.01738 0.97249 0.97071 1.22164 1.04796 0.98641 0.94275 1.18923 0.99447 0.91857 0.98515 1.20647 0.99260 0.96584 0.92514 1.20865 0.98121 0.99134 0.98211 1.20651 1.01493 0.94426 0.99735 1.21652 0.97974 1.01636 0.86189 1.41352 1.28252 1.17154 1.14115 1.22034 1.05121 0.97329 0.87843 0.95131 0.88824 0.96991 0.92745 0.93748 0.91478 0.90238 0.81306 0.84124 0.85185 0.84045 0.82378 0.80334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.97 37.16 0.33 -3.25 16 2 C 0.26 6.80 2.62 -69.08 -0.18 6.62 16 3 H 0.06 1.93 6.92 -51.93 -0.36 1.57 16 4 C -0.52 -14.47 7.95 -34.44 -0.27 -14.75 16 5 H 0.06 1.63 7.43 -52.48 -0.39 1.24 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.52 11.32 55.43 0.63 -24.89 16 8 Si 0.90 21.36 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.58 -13.19 2.75 -176.50 -0.49 -13.68 16 13 C 0.07 1.32 7.58 59.85 0.45 1.78 16 14 C 0.57 12.95 7.66 -12.48 -0.10 12.85 16 15 O -0.56 -14.59 16.26 5.28 0.09 -14.50 16 16 C -0.15 -2.77 5.92 -105.07 -0.62 -3.40 16 17 C -0.17 -2.65 8.78 -38.55 -0.34 -2.99 16 18 C 0.02 0.22 6.70 -84.00 -0.56 -0.35 16 19 C -0.07 -0.74 10.11 -39.28 -0.40 -1.14 16 20 C -0.14 -1.24 10.07 -39.50 -0.40 -1.64 16 21 C -0.14 -1.18 9.97 -39.91 -0.40 -1.58 16 22 C 0.04 0.44 10.89 -16.34 -0.18 0.26 16 23 N -0.34 -4.65 2.92 -60.42 -0.18 -4.82 16 24 C 0.01 0.16 11.38 -16.17 -0.18 -0.03 16 25 H 0.03 0.68 7.67 -51.93 -0.40 0.29 16 26 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 27 H 0.01 0.26 8.14 -51.92 -0.42 -0.16 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.04 0.69 7.28 -51.93 -0.38 0.31 16 30 H 0.07 1.05 5.42 -51.93 -0.28 0.77 16 31 H 0.08 1.47 7.12 -51.93 -0.37 1.10 16 32 H 0.17 2.26 4.57 -52.48 -0.24 2.02 16 33 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 35 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.18 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 307.23 15.07 4.63 4.63 Total: -1.00 -33.50 307.23 -7.68 -41.18 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.40 Total: 1.68 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -2.94 Total: -5.93 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.03 Total: -43.39 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.09 Total: -14.50 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.50 -7.68 -41.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155807944.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.031 kcal (2) G-P(sol) polarization free energy of solvation -33.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds